mRNA_Ecto-sp13_S_contig8219.19577.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8219.19577.1
Unique NamemRNA_Ecto-sp13_S_contig8219.19577.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8219.19577.1 vs. uniprot
Match: A0A6H5JI44_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI44_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.340e-19
Identity = 74/114 (64.91%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:    7 DLLVGLGGHHSSDSSEGPEVDDLDVIDTHSELQYPGIPSGAKLPFRTGLLNAGMDDDIPFEGQLGPPGXXXXXXXXXXXXXRSVAGRGATLLSPESKEDYA--AAPAMDLGDME 342
            DLLVGLGGH  SDSSEGPEVDDLD                         LNAGMD DIPFEGQLGPPGXXXXXXXXXXXXX        TLLSPESKED A  A PAMDLGDME
Sbjct:  387 DLLVGLGGHRLSDSSEGPEVDDLDRF-----------------------LNAGMDGDIPFEGQLGPPGXXXXXXXXXXXXXXX------TLLSPESKEDDADAAVPAMDLGDME 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8219.19577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI44_9PHAE2.340e-1964.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8219contigEcto-sp13_S_contig8219:4094..5226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size343
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.254477-CDS-Ecto-sp13_S_contig8219:4093..43561681464093.254477-CDS-Ecto-sp13_S_contig8219:4093..4356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8219 4094..4356 -
1681464093.270025-CDS-Ecto-sp13_S_contig8219:5147..52261681464093.270025-CDS-Ecto-sp13_S_contig8219:5147..5226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8219 5148..5226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8219.19577.1prot_Ecto-sp13_S_contig8219.19577.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8219 4094..5226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8219.19577.1

>prot_Ecto-sp13_S_contig8219.19577.1 ID=prot_Ecto-sp13_S_contig8219.19577.1|Name=mRNA_Ecto-sp13_S_contig8219.19577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
EEDLLVGLGGHHSSDSSEGPEVDDLDVIDTHSELQYPGIPSGAKLPFRTG
LLNAGMDDDIPFEGQLGPPGGGGGGGGGGGGGGRSVAGRGATLLSPESKE
DYAAAPAMDLGDME
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mRNA from alignment at Ecto-sp13_S_contig8219:4094..5226-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8219.19577.1 ID=mRNA_Ecto-sp13_S_contig8219.19577.1|Name=mRNA_Ecto-sp13_S_contig8219.19577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8219:4094..5226- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGGACCTGCTGGTCGGCCTGGGCGGGCACCACTCGTCGGATTCTTC
GGAGGGGCCGGAAGTGGACGACCTTGACGGTAAGTTGTCAGTCGTGTTAA
AATGTTGGCCTTGACCTGTGTGGGAGTTAGTCATGTTGAATCTTTTTGTT
GCAGTTGGTGGTGGTGGTGAAGTAGTCTGATGCTGTTGGTTCTGTTGGTG
TCGACCTTATGTGAGAAGGCAGTCGAGTTGATCTTGACCCTGACTCATTT
GAGAGCCAAGTCATGTTGGTTGCTGCTGTTGCTGGCTGGTGTTGATGTTG
CTGCTGCTGTTGTTATTGGAACGAGGGTGGGGCCGCCGTCCTGGTCGTCG
TCGGCGCTCGGCTGGTGTACTGGTGTGACGTTCCACCTCTGCCGTGAGGC
TTGATTTTTGCCCTCAAGCGGCGACTGACCGCTGTGGGTGTCTTCCTTCC
TTCCGGTGCAAAGGGGGTGGGTGGGCCCGTACGCCCACGGGGCAAGGACG
CTCGAGGGAGGGAGGTGTCCTGAGTACGCTGTAGCCGTGTAGTGTCTAGA
TAGGCCGTGAGGATCCTGTGTACTGTGAAGCCGTAATGTCCACACAGGGC
GGTACATAATGCAGCAGACATTGGAATTTTCGCTCGATTTCTGCCCACTT
TTTTTTTTCCCGCGGAGAACCGGGCTTTGCCAGGGCGGTGGACAATCACT
ATTCCGGCGCAGAAGAATGGCGGGCGAGACCAACCCCGCGGCCCGTCAAC
CCCCCCCCCCCCCCGCCCAATGTGTATCAGCTCTTATTAATAAAGACATA
CACACGCACCCTCTCGCTCACCCCTCTCGACCCCCGCACCCCCTTTTTTT
TGTCCACCTTTCGCCCAAAGTCATTGACACACACTCCGAGTTACAATACC
CTGGTATTCCCTCGGGGGCGAAGCTCCCGTTCCGAACGGGGTTGCTGAAC
GCCGGGATGGATGACGATATACCGTTCGAGGGGCAACTTGGACCGCCCGG
TGGCGGTGGCGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCAGGAGCGTCG
CCGGGAGGGGCGCTACTCTCCTGTCGCCGGAATCGAAGGAAGATTATGCC
GCCGCCCCCGCCATGGACTTGGGGGACATGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8219:4094..5226-

>mRNA_Ecto-sp13_S_contig8219.19577.1 ID=mRNA_Ecto-sp13_S_contig8219.19577.1|Name=mRNA_Ecto-sp13_S_contig8219.19577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8219:4094..5226- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGGACCTGCTGGTCGGCCTGGGCGGGCACCACTCGTCGGATTCTTC
GGAGGGGCCGGAAGTGGACGACCTTGACGTCATTGACACACACTCCGAGT
TACAATACCCTGGTATTCCCTCGGGGGCGAAGCTCCCGTTCCGAACGGGG
TTGCTGAACGCCGGGATGGATGACGATATACCGTTCGAGGGGCAACTTGG
ACCGCCCGGTGGCGGTGGCGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCA
GGAGCGTCGCCGGGAGGGGCGCTACTCTCCTGTCGCCGGAATCGAAGGAA
GATTATGCCGCCGCCCCCGCCATGGACTTGGGGGACATGGAG
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