mRNA_Ecto-sp13_S_contig82163.19573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82163.19573.1
Unique NamemRNA_Ecto-sp13_S_contig82163.19573.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: D7FSY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY0_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.520e-18
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            DRTVKFWDTRTSTPAAVVTLCERAYSMDT+GAMMVVATADRK+
Sbjct:  133 DRTVKFWDTRTSTPAAVVTLCERAYSMDTKGAMMVVATADRKI 175
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: A0A2J6RHZ6_9HELO (WD40 repeat-like protein n=1 Tax=Hyaloscypha variabilis F TaxID=1149755 RepID=A0A2J6RHZ6_9HELO)

HSP 1 Score: 56.2 bits (134), Expect = 6.360e-8
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            DRT+K+WD RT TPAA +T  ER YS+DT+  ++V+ATADR +
Sbjct:  138 DRTIKYWDLRTPTPAAQLTFPERVYSLDTKKKLLVIATADRNL 180
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: A0A0C3H5X1_9PEZI (Uncharacterized protein n=1 Tax=Oidiodendron maius Zn TaxID=913774 RepID=A0A0C3H5X1_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 6.370e-8
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            D+T+K+WD RTSTPAA +T  ER Y+MD +  ++V+ATADR V
Sbjct:  142 DKTIKYWDLRTSTPAASITCQERVYAMDVKDKLLVIATADRYV 184
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: A0A2X0MM66_9BASI (BQ5605_C028g10559 protein n=3 Tax=Microbotryum TaxID=34416 RepID=A0A2X0MM66_9BASI)

HSP 1 Score: 55.5 bits (132), Expect = 1.190e-7
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            DRT+K+WD RT  P   V L ER Y+MD RG +MVV TA+RK+
Sbjct:  137 DRTIKYWDLRTPNPVGAVQLPERCYTMDVRGNLMVVGTAERKI 179
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: A0A0B7MSP6_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7MSP6_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 1.590e-7
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            D+T+K+WD R+  P   V L ER YSMDT+G ++V ATADRKV
Sbjct:  113 DKTIKYWDLRSPQPVGTVQLGERCYSMDTKGDLLVAATADRKV 155
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: A0A0M0JG70_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JG70_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 1.620e-7
Identity = 25/43 (58.14%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            D+T+K+WD ++S+PAA +TL ERAY+ D R  +MVVATAD+K+
Sbjct:  130 DKTIKYWDGKSSSPAATLTLPERAYATDVRYPLMVVATADKKM 172
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: A0A7S0JK06_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JK06_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 2.230e-7
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            D+T+K+WD ++ TP A +TL ERAY+ D RG ++V  TADRKV
Sbjct:  129 DKTIKYWDGKSPTPGATLTLPERAYATDVRGELLVTTTADRKV 171
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: A0A2J6Q3Q9_9HELO (WD40 repeat-like protein n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6Q3Q9_9HELO)

HSP 1 Score: 54.7 bits (130), Expect = 2.240e-7
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            DRTVK+WD R++TPAA ++  ER YS+D R  ++V+ATADR++
Sbjct:  137 DRTVKYWDLRSATPAAQLSFSERVYSLDARKRLLVIATADRQL 179
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BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: S2J1S8_MUCC1 (ANAPC4_WD40 domain-containing protein n=5 Tax=Mucor TaxID=4830 RepID=S2J1S8_MUCC1)

HSP 1 Score: 54.3 bits (129), Expect = 3.010e-7
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            D+T+K+WD R+  P  V  L ER YSMDT+G ++V ATADRK+
Sbjct:  120 DKTIKYWDLRSPQPIGVAQLGERCYSMDTKGDLLVAATADRKI 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Match: A0A1E4TBI1_9ASCO (Uncharacterized protein n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TBI1_9ASCO)

HSP 1 Score: 53.9 bits (128), Expect = 4.190e-7
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   19 DRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV 147
            D+T+K+WD R  +P A V L ERAYSMDTR  ++VVATA+R +
Sbjct:  135 DKTLKYWDLRQQSPIATVNLPERAYSMDTRSNLLVVATAERHI 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82163.19573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSY0_ECTSI3.520e-1895.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2J6RHZ6_9HELO6.360e-858.14WD40 repeat-like protein n=1 Tax=Hyaloscypha varia... [more]
A0A0C3H5X1_9PEZI6.370e-858.14Uncharacterized protein n=1 Tax=Oidiodendron maius... [more]
A0A2X0MM66_9BASI1.190e-758.14BQ5605_C028g10559 protein n=3 Tax=Microbotryum Tax... [more]
A0A0B7MSP6_9FUNG1.590e-758.14Uncharacterized protein n=1 Tax=Parasitella parasi... [more]
A0A0M0JG70_9EUKA1.620e-758.14Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S0JK06_9EUKA2.230e-755.81Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A2J6Q3Q9_9HELO2.240e-755.81WD40 repeat-like protein n=1 Tax=Hyaloscypha hepat... [more]
S2J1S8_MUCC13.010e-755.81ANAPC4_WD40 domain-containing protein n=5 Tax=Muco... [more]
A0A1E4TBI1_9ASCO4.190e-758.14Uncharacterized protein n=1 Tax=Tortispora caseino... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82163contigEcto-sp13_S_contig82163:451..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score85.9
Seed ortholog evalue5.8e-15
Seed eggNOG ortholog2880.D7FSY0
Preferred nameRAE1
Model size147
KEGG koko:K14298
KEGG TC1.I.1
KEGG Pathwayko03013,ko05164,map03013,map05164
KEGG ModuleM00427
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000054,GO:0000151,GO:0000278,GO:0000280,GO:0000922,GO:0000972,GO:0000973,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0007346,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008582,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010564,GO:0010604,GO:0010628,GO:0010793,GO:0012505,GO:0014070,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016006,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016973,GO:0017038,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022613,GO:0031081,GO:0031224,GO:0031323,GO:0031329,GO:0031461,GO:0031503,GO:0031514,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032182,GO:0032239,GO:0032386,GO:0032501,GO:0032504,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033750,GO:0034504,GO:0034613,GO:0034629,GO:0036126,GO:0040008,GO:0042221,GO:0042254,GO:0042886,GO:0042995,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045886,GO:0045926,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048609,GO:0048638,GO:0048640,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051276,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051664,GO:0051668,GO:0051704,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0051963,GO:0051964,GO:0060236,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070507,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071407,GO:0071426,GO:0071427,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072686,GO:0080008,GO:0080134,GO:0080135,GO:0090087,GO:0090224,GO:0097159,GO:0097223,GO:0097431,GO:0097729,GO:0120025,GO:0140013,GO:1900034,GO:1901363,GO:1901987,GO:1901990,GO:1902494,GO:1902806,GO:1903046,GO:1903827,GO:1904396,GO:1904397,GO:1905809,GO:1990234,GO:2000026,GO:2000045,GO:2000197,GO:2000728
Exons1
EggNOG free text desc.transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
EggNOG OGsKOG0647@1,KOG0647@2759
Cds size147
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.0931036-CDS-Ecto-sp13_S_contig82163:450..5971681464093.0931036-CDS-Ecto-sp13_S_contig82163:450..597Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82163 451..597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82163.19573.1prot_Ecto-sp13_S_contig82163.19573.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82163 451..597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82163.19573.1

>prot_Ecto-sp13_S_contig82163.19573.1 ID=prot_Ecto-sp13_S_contig82163.19573.1|Name=mRNA_Ecto-sp13_S_contig82163.19573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
MLLYARDRTVKFWDTRTSTPAAVVTLCERAYSMDTRGAMMVVATADRKV
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mRNA from alignment at Ecto-sp13_S_contig82163:451..597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82163.19573.1 ID=mRNA_Ecto-sp13_S_contig82163.19573.1|Name=mRNA_Ecto-sp13_S_contig82163.19573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82163:451..597+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTACTTTATGCCAGGGATCGTACCGTCAAGTTTTGGGACACTCGAAC
GTCTACCCCCGCCGCCGTCGTAACTCTCTGCGAGAGGGCCTACTCCATGG
ACACGAGGGGAGCCATGATGGTGGTCGCCACTGCTGACCGGAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82163:451..597+

>mRNA_Ecto-sp13_S_contig82163.19573.1 ID=mRNA_Ecto-sp13_S_contig82163.19573.1|Name=mRNA_Ecto-sp13_S_contig82163.19573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82163:451..597+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTACTTTATGCCAGGGATCGTACCGTCAAGTTTTGGGACACTCGAAC
GTCTACCCCCGCCGCCGTCGTAACTCTCTGCGAGAGGGCCTACTCCATGG
ACACGAGGGGAGCCATGATGGTGGTCGCCACTGCTGACCGGAAGGTG
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