mRNA_Ecto-sp13_S_contig12346.1957.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12346.1957.1
Unique NamemRNA_Ecto-sp13_S_contig12346.1957.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12346.1957.1 vs. uniprot
Match: A0A6H5KTF6_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.020e-32
Identity = 64/94 (68.09%), Postives = 71/94 (75.53%), Query Frame = 3 
Query:   12 RSSWSNSCHSHGFRQMHSYSCSIKYGGGNGSSSF*PAKWPPRRGRPNFLGTSAHGLCFGSDLNMSSHDDNARFLHVAIGAFNVPEDSPFLYFGG 293
            RSSWSNSC    F    ++ C +KYG  +GSSSF P+KW PRRG PN+LGTS+HG CFGSDL MS HDDNARFLHVAIGAFNV EDS F   GG
Sbjct:  209 RSSWSNSCPFSRF-SPDAFICMVKYGSADGSSSFQPSKWIPRRGLPNYLGTSSHGPCFGSDLCMSLHDDNARFLHVAIGAFNVSEDSAFFTLGG 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12346.1957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTF6_9PHAE1.020e-3268.09TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12346contigEcto-sp13_S_contig12346:1935..2360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size426
Hectar predicted targeting categorysignal peptide
Exons1
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.1356385-CDS-Ecto-sp13_S_contig12346:1934..23601681462657.1356385-CDS-Ecto-sp13_S_contig12346:1934..2360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12346 1935..2360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12346.1957.1prot_Ecto-sp13_S_contig12346.1957.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12346 1935..2360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12346.1957.1

>prot_Ecto-sp13_S_contig12346.1957.1 ID=prot_Ecto-sp13_S_contig12346.1957.1|Name=mRNA_Ecto-sp13_S_contig12346.1957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
VLKIDPRGVIAAILTVFARCIHIHAQSSTVAATDQAAFSRRSGPQDVAAQ
IFWALPHTGSASAQTLTCPRTMTTPDSSMSRSARSMFPKILLFFTLEGQA
VTEINGGLPGVSCGHGSIATATAACQAGDHIGEWPHQPHKQ*
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mRNA from alignment at Ecto-sp13_S_contig12346:1935..2360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12346.1957.1 ID=mRNA_Ecto-sp13_S_contig12346.1957.1|Name=mRNA_Ecto-sp13_S_contig12346.1957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12346:1935..2360+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTCAAGATAGATCCTCGTGGAGTAATAGCTGCCATTCTCACGGTTTT
CGCCAGATGCATTCATATTCATGCTCAATCAAGTACGGTGGCGGCAACGG
ATCAAGCAGCTTTTAGCCGGCGAAGTGGCCCCCAAGACGTGGCCGCCCAA
ATTTTTTGGGCACTTCCGCACACGGGCTCTGCTTCGGCTCAGACCTTAAC
ATGTCCTCGCACGATGACAACGCCAGATTCCTCCATGTCGCGATCGGCGC
GTTCAATGTTCCCGAAGATTCTCCTTTTCTTTACTTTGGAGGGCCAAGCT
GTTACGGAAATAAATGGAGGTCTTCCGGGTGTGTCCTGCGGCCACGGCAG
CATCGCGACCGCCACCGCCGCGTGCCAAGCCGGCGACCACATTGGAGAAT
GGCCTCATCAACCTCACAAACAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12346:1935..2360+

>mRNA_Ecto-sp13_S_contig12346.1957.1 ID=mRNA_Ecto-sp13_S_contig12346.1957.1|Name=mRNA_Ecto-sp13_S_contig12346.1957.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12346:1935..2360+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTCAAGATAGATCCTCGTGGAGTAATAGCTGCCATTCTCACGGTTTT
CGCCAGATGCATTCATATTCATGCTCAATCAAGTACGGTGGCGGCAACGG
ATCAAGCAGCTTTTAGCCGGCGAAGTGGCCCCCAAGACGTGGCCGCCCAA
ATTTTTTGGGCACTTCCGCACACGGGCTCTGCTTCGGCTCAGACCTTAAC
ATGTCCTCGCACGATGACAACGCCAGATTCCTCCATGTCGCGATCGGCGC
GTTCAATGTTCCCGAAGATTCTCCTTTTCTTTACTTTGGAGGGCCAAGCT
GTTACGGAAATAAATGGAGGTCTTCCGGGTGTGTCCTGCGGCCACGGCAG
CATCGCGACCGCCACCGCCGCGTGCCAAGCCGGCGACCACATTGGAGAAT
GGCCTCATCAACCTCACAAACAGTGA
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