mRNA_Ecto-sp13_S_contig8206.19564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8206.19564.1
Unique NamemRNA_Ecto-sp13_S_contig8206.19564.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: D8LHX1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX1_ECTSI)

HSP 1 Score: 504 bits (1299), Expect = 1.010e-178
Identity = 250/285 (87.72%), Postives = 259/285 (90.88%), Query Frame = 1
Query:    1 SGLTFMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRFAVKRMPKATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKVVFEGDLQGYLAE 855
            SGLTFMFVRSLKDAIYGQVWDA+EVRLHSGGGV FYTPVLDERGVPRRFAVKRMPK TIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLL QIVDGTRYVHSKGICHADMSLENTLVNSAHTEAF+IDFGMALQMPTDEA                       FMSVPDRR+AKRSYCPPETYKGR+PYDGVKVD+FSVGCMGFM+FTGIPPFDYASRLDRKF+KVVF+GDLQGYLA+
Sbjct:   20 SGLTFMFVRSLKDAIYGQVWDAIEVRLHSGGGVDFYTPVLDERGVPRRFAVKRMPKETIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLYQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFMIDFGMALQMPTDEAGQR--------------------FMSVPDRRRAKRSYCPPETYKGRQPYDGVKVDMFSVGCMGFMLFTGIPPFDYASRLDRKFRKVVFQGDLQGYLAD 284          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A6H5L877_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L877_9PHAE)

HSP 1 Score: 491 bits (1264), Expect = 2.400e-173
Identity = 246/285 (86.32%), Postives = 254/285 (89.12%), Query Frame = 1
Query:    1 SGLTFMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRFAVKRMPKATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKVVFEGDLQGYLAE 855
            SGLTFMFVRSLKDAIYGQVWDALEVRLH+GGGV FYT VLDERGVPRRFAVKRM KATIARL PT+QENPMREAAFLTLVQDPGHPNVVGLAAAL+DDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMA QMPT+E                        FMSVPD R+AKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKF++VVF GDLQGYLA+
Sbjct:   23 SGLTFMFVRSLKDAIYGQVWDALEVRLHNGGGVTFYTSVLDERGVPRRFAVKRMLKATIARLQPTIQENPMREAAFLTLVQDPGHPNVVGLAAALEDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMAQQMPTNEHGQR--------------------FMSVPDGRRAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFRRVVFHGDLQGYLAD 287          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A7S2UUC5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUC5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.090e-31
Identity = 93/292 (31.85%), Postives = 142/292 (48.63%), Query Frame = 1
Query:    1 SGLTFMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRF-AVKRMPKATIARLLPTMQENPMREAA---FLTLVQDP---------------GHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKV 819
            SG  ++ VR+L++ IYG+V  A+ + +  G GV  Y          R + A+K M K  I  L     E+P++E A   FL+   +                GHPNV+ L   +QD+  VY V P+ G     E+F +V    Q    E       R+I+ GT Y+HS+G+CH D+SLEN LV+       IID GM L+MP D+   T G                   +  P  +  KR+Y  PE +  + P+ G  +D ++ G + F+M TG+PPF+ A+ +D +F+ +
Sbjct:   44 SGNVYLLVRTLRECIYGKVKHAIRI-VDVGNGVYEYG---------REYVAIKVMFKRKIQELRGRHNEDPIKEIAAMQFLSTAPEGVEGTKQGEGESTHQGGHPNVLPLLECVQDEDLVYCVMPYCGA----ELFSFVEQ--QGAFLEDRARQYFREILCGTNYLHSRGVCHRDLSLENVLVSQ--NTCIIIDMGMCLRMPVDQ---TTGKH----------------LLINPQGQCGKRNYMSPEIFLNKRPFSGEAIDFWACGIILFIMLTGVPPFETATEVDPRFQMI 298          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A1Z5JDY4_FISSO (Protein kinase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JDY4_FISSO)

HSP 1 Score: 129 bits (323), Expect = 5.850e-31
Identity = 89/283 (31.45%), Postives = 139/283 (49.12%), Query Frame = 1
Query:   25 RSLKDAIYGQVWDALEVRLHSG---------GGV---IFYTPVLDERGVPRRFAVKRMPKATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLL-----RQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKVV 822
            R L+DAIYG VW  L +R H G          GV       PV+ E    R  AVK +  A + R+   + E+P++E A + ++    HP+V+G    LQD   +Y + P+      G++F  V ++ +    E  +   +     RQI+ G  ++ S+GICH D+SLEN LVN       IID GM L++P D+ A                   V   +  P     K +Y  PE +   E +DG  +D+++ G + ++M TG PP+D ASR D++++ +V
Sbjct:   76 RRLQDAIYGSVWACLVLRRHFGVAADDAARAAGVQPGSPNAPVVWEITEGRHVAVKMVEWARVHRMRGRLLEDPVKEVAAMQMLGSTPHPHVLGTMEVLQDGECLYSIMPYCR---DGDLFGVVVEHAEENGGEIGMAEPVARYWFRQILWGLHHLQSEGICHRDLSLENVLVNG--DVCMIIDMGMCLRVPYDDGA----------GAVTDVHKGVIRRLIKPQGVCGKHNYMSPEVFANAEDFDGFAIDLWAAGVVLYIMLTGFPPYDQASRADKRYELIV 343          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A7S0CIM8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIM8_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.370e-28
Identity = 94/276 (34.06%), Postives = 133/276 (48.19%), Query Frame = 1
Query:   13 FMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGV-PRRFAVKRMPKATIARLLPTMQENPMREAA---FLTLVQD---PGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKV 819
            F   R LK AIYG V     +RL          PV     + P+  AVK M +  + +L     E+P++E +   FL+L +D     HPNV+   A LQDD  +Y   PF      GE+F +V  + +   P A      RQI+ G  Y+  KG+CH DMSLEN LV+  H  A +ID GM L++P        G  PA           +      P     K +Y  PE    + P+DG  +DV++ G + F+M  G+PPFD+AS  D +F+ +
Sbjct:   73 FWIGRKLKKAIYGCVRSCTILRLRD--------PVNQTWEITPQMAAVKLMDRNIVNQLRGRHIEDPIKELSCSQFLSLGEDGEPQRHPNVMSSLAVLQDDQYIYFFMPFCN---CGELFGYVERDGRFAEPVARHW--FRQILGGIYYLQKKGVCHRDMSLENLLVDR-HALALVIDMGMCLRVPFGSE---DGSEPAIDVSGNTLRRLI-----SPQTACGKPNYISPEVLSSQVPFDGFAIDVWAAGVILFIMLIGLPPFDWASDDDPRFRMI 326          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: B7G286_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G286_PHATC)

HSP 1 Score: 114 bits (285), Expect = 1.920e-25
Identity = 81/282 (28.72%), Postives = 135/282 (47.87%), Query Frame = 1
Query:   25 RSLKDAIYGQVWDALEVRLHSG---------GGV---IFYTPVLDERGVPRRFAVKRMPKATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPA-----PEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKV 819
            R L+DAIYG VW  L +R H G          GV       P++ E    +  A+K +  A +  +   + E+P++E A + L+    HPNV+G    LQD   +Y + P+      G++F  V    ++       PE       RQI+ G  ++ ++G+CH D+SLEN LV+       IID GM L++P ++      ++                 +  P     K +Y  PE +   + +DG  +D+++ G + ++M TG PP+D ASR D++F+ +
Sbjct:  101 RRLQDAIYGSVWACLVLRRHHGIAADDAARAAGVEPGSASAPIVWEIS-GQHVAIKMVEWARVHHMRGRLLEDPVKEVAAMQLL-GARHPNVLGSTEVLQDGDFLYSIMPYCR---DGDLFGVVVQYAEDSGGESGMPEPVARFWFRQILWGLHHLQTQGVCHRDLSLENILVDG--DRCMIIDMGMCLRVPYNDPHKPGAVTDVTRGSTRR--------LMRPQGVCGKHNYMSPEVFANTDSFDGFAIDLWAAGVILYIMLTGFPPYDQASRTDQRFELI 367          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A7S2P167_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P167_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.520e-24
Identity = 86/283 (30.39%), Postives = 134/283 (47.35%), Query Frame = 1
Query:   25 RSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRR----------FAVKRMPKATIARLLPTMQENPMREAAFLTLVQDP--GHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKVVFEGDL 837
            R LK AIYG V   + ++L          P   +    RR           AVK M    I +L    +E P++E A +  +++     P+V+     + D   +Y   P+  G   GE+F +V  + + P P A      RQ+V G  ++   GICH DMSLEN LV+     A +ID GM L++P  +   T G++            +    +  P  +  K +Y  PE  +  EP+DG  VDV++VG + F M  G+PP+D+A++ D +FK +  +G L
Sbjct:   75 RKLKKAIYGCVRSCMLLKLCQD------MPYQTDPSTGRRNIIWEITGKFVAVKIMDWDLIRKLSGVHKEEPLKEIAAMQSLRNTLDACPHVMPTLDVMTDQQYLYSFMPYCSG---GELFSYVQRDGRFPEPLARFW--FRQLVQGIFHLQKAGICHRDMSLENVLVDG--NNAVVIDLGMCLRIPFSDDD-TGGVTDVTA--------YTLRRLMPPQGQCGKPNYMSPEVLENSEPFDGFGVDVWAVGIILFTMLVGLPPWDWATKEDLRFKMIAIDGQL 335          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: A0A812Z8L4_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Z8L4_9DINO)

HSP 1 Score: 108 bits (269), Expect = 3.420e-23
Identity = 84/264 (31.82%), Postives = 126/264 (47.73%), Query Frame = 1
Query:    1 SGLTFMFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRFAVKRMPKATIARLLPT----MQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPF 780
            +G ++  V++L+D + G+V  A +V L    GV+        R   +  A+K + K+ I          +QE+PM+E A L  +Q  GHP+V+ L   ++DD  V+ V  F GG   G+MF  VA+       EA       Q++ G  ++HSKG+ H D+SLEN L+ +      IID G+A ++P       P  SP                  +P +R  K  Y  PE Y   E  DG  VD +  G M F+M  G+PP+
Sbjct:   11 AGTSYELVKTLRDCLMGKV-KAAKVWLPGADGVL--------RDTGKVVAIKILLKSCIQSGTTMDCRPVQEDPMQEMAALRYLQ--GHPHVLELLDLMEDDEHVFEVMEFAGG---GDMFSRVAEAPGGHLSEAEAQRYFYQLITGLHFMHSKGVVHRDLSLENALL-AGDDVLKIIDMGLATELPV------PDHSP------------------IPRQRVGKTGYMSPEVYDRSEVQDGRLVDTWCTGIMLFIMLFGVPPY 235          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: B8BR32_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR32_THAPS)

HSP 1 Score: 101 bits (251), Expect = 6.980e-22
Identity = 66/207 (31.88%), Postives = 106/207 (51.21%), Query Frame = 1
Query:  202 ENPMRE-AAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYCPPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFDYASRLDRKFKKV 819
            E+P++E AA   +  D   PNV+      +D+  +YL  PF     SGE+F ++  N +    E       RQ+++   ++  KGICH D+SLEN LV+  +T+A +ID GM L++P +        SP                +  P  +  K +Y  PE     EP+DG  VD+++ G + F+M  G+PPF++AS  D +++ V
Sbjct:    7 EDPLKEVAAMQFMCSDGAKPNVLPCWDLFKDEKYIYLCMPFCS---SGELFGYIERNGR--FDECVAKFWFRQLLNALYHLQKKGICHRDISLENILVDQ-NTKALVIDMGMCLRVPFN--------SPTGCESVYDSSAGTLRKLIYPAGQCGKPNYISPEVLLNNEPFDGFAVDLWAAGIVLFIMLIGLPPFEWASNDDPRYRLV 199          
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Match: B5YMR8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMR8_THAPS)

HSP 1 Score: 100 bits (248), Expect = 5.470e-21
Identity = 67/214 (31.31%), Postives = 104/214 (48.60%), Query Frame = 1
Query:  178 ARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVTPFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHADMSLENTLVNSAHTE--AFIIDFGMALQMP----TDEAALTPGLSPAPXXXXXXXFFFVF*FMSVPDRRKAKRSYC------PPETYKGREPYDGVKVDVFSVGCMGFMMFTGIPPFD 783
            A+LL    ENP +E A L ++    HPNV+ L  A  DD  +Y V P+  G   G +  ++   +QN  PEA    +  QI++G  ++HS+G+CH D+S EN L           I+DFGM L+ P     D    T  ++                 M    R    R++C       PE Y+ ++ +DG+ VD++SVG + F++ TG  P++
Sbjct:   33 AKLLQRNPENPWKEIAALQMLGSD-HPNVISLLGAFADDLCLYEVMPYYSG---GNLSAYM-HAHQNGLPEAQARGIFLQIINGLHFMHSRGVCHHDISTENILFKEDENSLRCIIVDFGMCLRTPHNYPDDPIGTTDDITDVS--------------MGTQRRLIVSRNHCGKLRFMAPEIYQKKDCFDGLAVDIWSVGVVLFILLTGRQPYE 227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8206.19564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX1_ECTSI1.010e-17887.72N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5L877_9PHAE2.400e-17386.32Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2UUC5_9STRA2.090e-3131.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5JDY4_FISSO5.850e-3131.45Protein kinase domain-containing protein n=2 Tax=F... [more]
A0A7S0CIM8_9STRA2.370e-2834.06Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B7G286_PHATC1.920e-2528.72Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S2P167_9STRA1.520e-2430.39Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A812Z8L4_9DINO3.420e-2331.82Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
B8BR32_THAPS6.980e-2231.88Protein kinase domain-containing protein (Fragment... [more]
B5YMR8_THAPS5.470e-2131.31Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8206contigEcto-sp13_S_contig8206:3..6292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.8
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog653948.CCA15819
Model size855
KEGG rclassRC01978
KEGG koko:K03644,ko:K07953
KEGG ReactionR07767,R07768
KEGG Pathwayko00785,ko01100,ko04141,ko05134,map00785,map01100,map04141,map05134
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0006810,GO:0006888,GO:0006900,GO:0006996,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0012507,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0034622,GO:0035459,GO:0043226,GO:0043227,GO:0043229,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048194,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051668,GO:0061024,GO:0065003,GO:0071840,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805
Exons7
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG0077@1,KOG0077@2759,KOG0583@1,KOG0583@2759
EC2.8.1.8
Cds size615
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04031,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8206.19564.1prot_Ecto-sp13_S_contig8206.19564.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8206 1052..6277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.3328648-UTR-Ecto-sp13_S_contig8206:2..1551681464092.3328648-UTR-Ecto-sp13_S_contig8206:2..155Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8206 3..155 -
1681464092.346986-UTR-Ecto-sp13_S_contig8206:979..10511681464092.346986-UTR-Ecto-sp13_S_contig8206:979..1051Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8206 980..1051 -
1681464092.4297104-UTR-Ecto-sp13_S_contig8206:6277..62921681464092.4297104-UTR-Ecto-sp13_S_contig8206:6277..6292Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8206 6278..6292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.3564034-CDS-Ecto-sp13_S_contig8206:1051..10521681464092.3564034-CDS-Ecto-sp13_S_contig8206:1051..1052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8206 1052..1052 -
1681464092.3679578-CDS-Ecto-sp13_S_contig8206:1592..17861681464092.3679578-CDS-Ecto-sp13_S_contig8206:1592..1786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8206 1593..1786 -
1681464092.3779-CDS-Ecto-sp13_S_contig8206:2623..27661681464092.3779-CDS-Ecto-sp13_S_contig8206:2623..2766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8206 2624..2766 -
1681464092.3894475-CDS-Ecto-sp13_S_contig8206:3097..31851681464092.3894475-CDS-Ecto-sp13_S_contig8206:3097..3185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8206 3098..3185 -
1681464092.400752-CDS-Ecto-sp13_S_contig8206:4839..49711681464092.400752-CDS-Ecto-sp13_S_contig8206:4839..4971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8206 4840..4971 -
1681464092.4127123-CDS-Ecto-sp13_S_contig8206:6220..62771681464092.4127123-CDS-Ecto-sp13_S_contig8206:6220..6277Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8206 6221..6277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8206.19564.1

>prot_Ecto-sp13_S_contig8206.19564.1 ID=prot_Ecto-sp13_S_contig8206.19564.1|Name=mRNA_Ecto-sp13_S_contig8206.19564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
MFVRSLKDAIYGQVWDALEVRLHSGGGVIFYTPVLDERGVPRRFAVKRMP
KATIARLLPTMQENPMREAAFLTLVQDPGHPNVVGLAAALQDDTTVYLVT
PFVGGVGSGEMFDWVADNYQNPAPEATIMPLLRQIVDGTRYVHSKGICHA
DMSLENTLVNSAHTEAFIIDFGMALQMPTDEAALTPGLSPAPPPPKKNSF
FFVF*
back to top

mRNA from alignment at Ecto-sp13_S_contig8206:3..6292-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8206.19564.1 ID=mRNA_Ecto-sp13_S_contig8206.19564.1|Name=mRNA_Ecto-sp13_S_contig8206.19564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8206:3..6292- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGGGCTGACGTTCATGTTCGTCCGGAGCTTGAAGGATGCCATTTATGG GCAAGTGTGGGACGCGCTAGAGGTGTGAACGAATGTATAAGATGTATGCG TTTATCCTTCATTTCACGGTACGGTGTGGTGCCATCCGGCACCGGGTGCC CCGTTGTATCCTCGGCAGTTCCACCGAGTTTGAAGGAAGCATTTTACATG TTACGGCCAAACTGCTCGTGGGATCCGTTTAGAGGTGTGTATGCATATCC ATATGGACGATGTTGCGTTGTTGTATGCTTTCACGGCACGTACACGGTTG GTTCCATCCGGGAGCGGACGTCCCCCCTCGTCGTCTTCCATTTTGGCGGA GGTCTGCGTATAGCTGCGTTTTCTGGGCATGTTTGGGGCCGTCCTTGAAA TCTGTGTCCAACTGATTCGTTCCGTCTACCCCGGGCGTCAGTCCTTTTAT GTTTCGACGTGTGTTGGGCGCACCAGCCGGGGGTCAAGACAGGAGGAAGT TAAACCTAGATTTCTTTTTTTTTCTCCGCGTTTCCTCGTGTGCGGTGCCT CTCTTCGATCTTTTACTGTCTACGCCTCAAGGGTCCTCAATTCTGAGCAA TCGTTTTTTTGCATCCTTTTTGTGTCCCGACCATGCGAGAAGGTTTCACG AGGATGACGACTAAAATACCACAGATATGGGTGGCACATTGTATGGTTCA CACCCCCTACGCCGATTTTTACAGCTCGATTGCTCCACGAACGAGAATGT ATGTATCATTAATAGGTTTTCGGGGAAATCCTGACGATATGGCTCCGCCG CCGTCGTGTTCGGCTCCGCCGCTCTTTCTGCTGTGGAAAGTCGGTCCAGG GGGTGTGATATCTCACGTCATGTCTCCTACTTTGAACCACCCAGCAACGT ATGTGACTAGTGACTAAACGCCGTGCCACTCGGTAAACACGCGTGACGTC CACAGTGCGAACACTACGGGCTCGGAGAGCGCGAAACCACGTAACCTCAC GGCAGGCTACTAGGTTTGAAGAAGGAATCCCCCAGGCGGGATGGCGGTGT TGAACTCTTACCCGCGTCAGAATTTCGCGTAGCAACATCTGGATGGATTG CTGTTTCGTTCAGTTTACCTCGTGACACCTACTGGATACTAGAATACCGT TTGTAGTAGCTGCTGCTGCTGTATTATATCTACCGACTCGGTCTATCTAT GATGCGGTGGGTATGCATGGCTGCTACGGTACGCTGCTGCTTGTTGTTTA TTTATAGTCCACTCCGTCTCCCTGCCATACGGTACGCACTACACTGCTGT CGTCCCGTCTTCCTCTGGAAGGTGAGGCTGCACAGCGGGGGCGGCGTAAT CTTCTACACCCCGGTGCTCGACGAGAGAGGCGTGCCGCGCCGGTTTGCCG TGAAAAGGATGCCGAAGGCAACTATTGCCAGATTGCTGCCGACCATGCAG GAGGTGAGATGGGTCTGCGCGGTGGGTCGGTCCACTCGCGTGATTGGCTT GGCTGTGGCCGCGGTTTTACTACTGTATCGCGGACTTTTGTGTTTTGCCC GGCCCGCGAATCTCAATCTCAGTCGAGAGTCTGTGCACGGTTTCGTTCGG TGCATGTCATATGTTGAAAACCCCTTACCACGCACAGAAAATTCGGCGTT CTTGCGAAATTTCTGAAATGTAAGAAAAAGAGCGAACAACGCCTGCCGAT TGGATGGTGCAGACAGTTCCATCCCTGGGTGAAAGTGCAAAGCTGCCTTC CCCCTTGAGCGGTTTCTTTTTTTAATCCCTATCAAATTTCGCCTCGATAA TCGAGGGGACCTTTGGTAGGGATTATCAACAGCAACTGGCGGGAGCGTGG TAAACGGAGCACGATAAGGAGGTTTTAGATATTTATCCAGAGGGAAAGCG AGACCTGCTAACCCAAGCCCTAGGTTGCCCGGTGCCTCCTATCAACGGTG GGCTAGATACTTCTTCCGCGCTTGCCCCTAGAAGCGCTTCCACCCAAGGG TAGACAGACGCGGCGCAACTTCGCTGTTGAACCCGCGGCGTAATCGCCCC GCGATTCGACCTGTTCATTACCCTCATACTTTTCCACTCTACGAAGCATC CATTCTAGACTAGACCCGTGTACCCTGGTACCCCCCCTGGTCGAGTTGTT CAAAGGAGGAGACAATCATGCCATGATTCGCGAGGTAAAGCAGGTGAAGA AGATGGGGACAAAAAGTGTCCCCAAAAGGCCATCTAGCCCTCAAGGGGTT AAGGCTCTCGTTCTTCGGTTTTTTGTTCACCGACCCCAAACATGATTTTA GTGGTGGTGTTGGAAGCGCACGATACCTCTTCCCCCCAAACCCAAAATTG TGGAGGTATACGTACCTCTACTTGGTACGTATTTACTCAGGAGTACCATC TATTATTACAAAAAAATTAACAGCCGCGCACACCCACTGCTTTTGTTTTT CGCAGCATACATTTGTCAAAAACTCGAGTCTCTGATGTGTTTTGGTGTGG TCGCTCATGGGGTAAACGTCAAGTATCATACATGTATCGCGTTGGTCGGA GAATGAGAGGACTATGAATTATTTGTGCGTGTTGCAGCAGAAAGGTTTTT TTTTTTCTTATGACCACCCACTGCAATGTATGTAAATGGTTTGTTGTTTG TTTTTGTTTGTTTTTGTCTTTTCAGTTTTGGGGACGCGACATACGTATGC AAGGGTCGATTCTCTCAACTTCATGTGGCAATGTTAGAAGATTCACATCC GGCGACGAGCGTTAGGCACAGATTGAAACTTTTTCTGGTAGTCTAAAAGC CGCGATTAGTGTTGAGGCCTCTTGCTTGCTGTTATCTCCTTCGCACCCTG TGATTTTGGTCGGACCCAGCTACTGGTACGCTTACAAGTAAGCGCTCCCC GCCCCCTCTCGTAATGCTCGTAATTATTTTGTTTGTTTTTCATACACTGA AGCTGAACAAACCCATCTTTGGGCGTTACGTTTTCCCCCAGCAATAACAA TCATCCAACATTTCGTTACGGCATCTGGTGAGCACGCCTGAAAAAACTCT TAACATTGTTCCCACCCTGTTTTCTGTTTTGCTTGGGATGGCGTTTTTCG ACGATAGAACCCGATGAGAGAAGCGGCCTTTTTGACCTTGGTGCAAGATC CAGGACACCCTAACGTGGTCGGCCTGGCGGCGGCTCTACAAGACGGTAGG TTCCTGTTGCCTCTCGCTGGGGTTTCGTTTTTTTTTTTCCGAAGTTGACC CAAGGAGTTTACGATAGCTTAGCTTTATTGCATGTGTGTGCCGGAGGGGT ACATGTACCACGCCCTGTACTTGACCATATTCAACACGCACGCAACATTG CCTTGTCTCCCAACACCCCGGGCTATTTTTTTGCTACATAAGAGGTGTAG GAAGTTTACACACCGTTTTTTTTGTACCTACTCTCACCCCGTTAATTTTG TGTATGGTAACAGAGTTTCAACACCGTTTTCTTACCACTCTCGCCCACAC CCCCGTTTTTTTCCGAACCAACACAGATACTACGGTGTACTTGGTGACGC CTTTCGTTGGAGGAGTGGGGAGCGGAGAGATGTTCGACTGGGTGGCGGAT AACTACCAGAATCCGGCACCGGAGGCAACTATCATGCCGCTTTTGCGCCA AATCGTCGATGGCACGAGGGTGAGGAGTGCCGCCGAGGCGATCGATTCTC TCCGTCGAGTCGCATTTTTCTTGATGCTTCTTGGCCGCTCTGTATGGGTA TTTGGGTCCCCAAAGCTGAAAACTAAAGAATCCCGAAACAACCCACAAAA AAAAAATCACGCAACGCCATCACATGATTACTTTTTTATGTTTACGTTTG GATTTGCTGAGTTGTATAAGGACAGCTTGTGTGTGACTTAGTAGGCATGC CGCAGTGTGCGTTTGTAGGGGGGTGGGGTAGTCGAACCGCGCCGCCCGAT GTGGCGGGAGTGCTGTCCTTTTTCTTGTCTGCGGGCCCCCTCCAGTGTAC CTTGTGGTGTCGCACGCATGATGTTCGGCGCTCTATGGGCTCGTGGTTCG ATACTGCACTCGTTGGAAACTTTGCCCTCCGGAAACTGCTACCTAACGCA CTACCTCCACGGATGTCCCGTGGCTGGGGCTTCGGCAAAACATCTTGTGG TTAAAATACGGTGCGCTTTTGCTCGTGTAGTGCCGCCAGCACCTCACTCA ACCGCCTTGCTTCGGACAGGTAGAGATAACCCCATCGTATCCCGACGCGC AGCGGATGAAATCGTCACCATTCTTTTCATCGTTCGCACTATCATACTGA GATGCAATACGAGCACGTCTTGCAACCGCCAAGCTGCTTATTTGAAAATG TATATACATTTACCTCGTGAGGTTTCTGTCCCCACCCGCGGGAACATTAA AATGTTATTAAGAATACTCTCCGTTCGATGTTCGACTTGTGAAACGCGTG CATGGATGAACGCCCGCGGGTGGAAAACCGTGGTCCCGACGACCCTACAA AACCAGTACGTACACTCGAAGGGGATCTGCCACGCGGACATGTCGCTCGA GAACACCTTGGTCAACTCGGCGCACACCGAGGCTTTCATCATCGACTTTG GCATGGCTCTTCAGATGCCGACCGACGAGGCTGCCCTCACCCCGGGGCTT TCCCCCGCTCCCCCCCCCCCAAAAAAAAACAGTTTTTTTTTTGTTTTTTA GTACTGCTATAGTCGTTCTTTTTCGCGACAATTGGGACCATAAGGTTCAA AAGCACGGCCCAGCGGTGGATCCTGCACTAAACTCTGAACACTGTTGGTA TCCATGTGTCAAACTGTTACCACTTTTGGCTCATAGGTCGACCACGATGG AAGCGTTGAAGAAACTGTTGTGGTTTTATCTCGAACGAGGTGGTCTTCTT TGATTGCATGAAGTACATTTTCGAAGAAACCAAGCCCCGACTTGAGTTCG ACGTTCTTATTGGTGGGCCCGTTCCGTACTCTCGTGCGAAATGTCTACGA TGAATAAATCCCGTGTGTGTGTTCATGCGTAGACCTTTTTTGTTTTGTTC GGAGTATTCCGTTCTTTTTTTTCCGTCAAGGTTGCTGTACCACTACTGTG CTCTCTGTGCCTGTGCATGCGTGTTTTCCATGTTTCATGGACTGCTGTGC TAAAAAATCGAGCACCGAGGGTATGCCCGACCGACCAATGCGTGTGTGTA AGGAGTCTTCCCATCGTTGCTGCCCCCAACCTTTCGATAGGTTCATGTCC GTGCCGGATCGCCGCAAGGCCAAGAGGTCCTACTGCCCGCCCGAGACCTA CAAAGGCCGAGAGGTGGGACACCTGTCTTGCTGCCCTTCTCCCCCCGCCC CCTCTCCCACGCAACAACGACGAGAATATGGTAGCTGTACTGGGGAATAG GATGGGGTTGAAGAGGCGGGGGAAGTAACATCGATGCGATAGGAAGGACA CGGGAAGCGCTTTTGGGCCACCTTTGGCAAAATAGGAAGGCCATCGGCGA TCGGTCTTATGGGAACAGTGCTCCGTCCTCCCTCTAGGACGCGTGGTCTA TTGCCCAACAGCTAAGGCATGCAACACACGAGCACCCCTCCGATTCCTCG CTCGCCTCCACTGGGGAAAGTCGCCCCGAGCATGGTACAAGGTACACTTG CAGGACTTGGCCGGATCTATCTATCGCCATCATTTTCCCCTCGACGGTCA GGACGTACGAAGCGTATTGGGCTAAGGAAGCGGAAACGATTTTCGTGCGG CGGCAGATTCAAAGCTCTCGCCCCTGATGGTAATCTTGAGATGGCACTTG TCGTTGTTACCGTGGAGTGTTTCGACAATGCTTTCCGGATTGGCTCCTTC GCTGTAGAAGACAGACCCCGATAAGTCAAGTGTGCGACAACCCGTTCGTC ATTTGTTGGCGGGTGGGCGCAGGCAAATTCGGGGGAAGCGGGGTCTGTTT TATTTTGCCTTCCGGTAACTCTGCCTGCCATGTAGATTTTTCATCCCTCT GGATCCTATCGTTGATTCCTATCGACGCTGTTGTTCGTTTGCTGCCTTTT TTCCCCCGTGCCGTCCCCTCCGCCATCACGGAACTACGGAAAAAAACGTT ACCATACCTTCCGATGCACGAATATGTACATGGCCAGCCCTACGACGGTG TCAAGGTGGATGTGTTCTCCGTTGGCTGCATGGGGTTCATGATGTTCACG GGCATCCCTCCCTTCGACTACGCCTCGCGACTGGACAGAAAGTTTAAGAA AGTGGTGTTTGAGGGGGACCTGCAGGGCTACCTTGCAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8206:3..6292-

>mRNA_Ecto-sp13_S_contig8206.19564.1 ID=mRNA_Ecto-sp13_S_contig8206.19564.1|Name=mRNA_Ecto-sp13_S_contig8206.19564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8206:3..6292- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCCGGAGCTTGAAGGATGCCATTTATGGGCAAGTGTGGGACGC
GCTAGAGGTGAGGCTGCACAGCGGGGGCGGCGTAATCTTCTACACCCCGG
TGCTCGACGAGAGAGGCGTGCCGCGCCGGTTTGCCGTGAAAAGGATGCCG
AAGGCAACTATTGCCAGATTGCTGCCGACCATGCAGGAGAACCCGATGAG
AGAAGCGGCCTTTTTGACCTTGGTGCAAGATCCAGGACACCCTAACGTGG
TCGGCCTGGCGGCGGCTCTACAAGACGATACTACGGTGTACTTGGTGACG
CCTTTCGTTGGAGGAGTGGGGAGCGGAGAGATGTTCGACTGGGTGGCGGA
TAACTACCAGAATCCGGCACCGGAGGCAACTATCATGCCGCTTTTGCGCC
AAATCGTCGATGGCACGAGGTACGTACACTCGAAGGGGATCTGCCACGCG
GACATGTCGCTCGAGAACACCTTGGTCAACTCGGCGCACACCGAGGCTTT
CATCATCGACTTTGGCATGGCTCTTCAGATGCCGACCGACGAGGCTGCCC
TCACCCCGGGGCTTTCCCCCGCTCCCCCCCCCCCAAAAAAAAACAGTTTT
TTTTTTGTTTTTTAG
back to top