mRNA_Ecto-sp13_S_contig82059.19563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82059.19563.1
Unique NamemRNA_Ecto-sp13_S_contig82059.19563.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: D8LU47_ECTSI (T-complex protein 1 subunit gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU47_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 3.110e-30
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            +SQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT
Sbjct:  249 ESQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 308
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A6S9KVF4_HETAK (T-complex protein 1 subunit gamma n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KVF4_HETAK)

HSP 1 Score: 107 bits (268), Expect = 6.530e-26
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            +SQTNVE+TKEEDWNTLLRMEEEYIENICAQIVA  PD+VITEKGVSDLAQHY +KA IT
Sbjct:  249 ESQTNVEITKEEDWNTLLRMEEEYIENICAQIVALRPDVVITEKGVSDLAQHYFVKAGIT 308
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A7S2SP58_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP58_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.610e-26
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            +SQTNVE+TKEEDW+TLLRMEEEYIEN+CAQIVA  PDIVITEKGVSDLAQHYL+KA+IT
Sbjct:  251 ESQTNVEITKEEDWDTLLRMEEEYIENLCAQIVAVRPDIVITEKGVSDLAQHYLLKANIT 310
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A836CR16_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR16_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.610e-26
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            +S TNVEVT+E+DWNTLLRMEEEY+ENICAQIVAF PDIVITEKGVSDLAQHY MKA+IT
Sbjct:  250 ESATNVEVTQEDDWNTLLRMEEEYVENICAQIVAFKPDIVITEKGVSDLAQHYFMKANIT 309
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A7S2FP00_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FP00_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.380e-25
Identity = 52/60 (86.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            +SQTNVE+TKEEDW+TLLRMEEEYIEN+CAQIVA  PDIVITEKGVSDLAQHYL+KA+IT
Sbjct:  279 ESQTNVEITKEEDWDTLLRMEEEYIENMCAQIVAVKPDIVITEKGVSDLAQHYLLKANIT 338
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A2D4BDA5_PYTIN (T-complex protein 1 subunit gamma n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDA5_PYTIN)

HSP 1 Score: 103 bits (258), Expect = 2.000e-24
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            +SQTNVE+T E+DWNTLLRMEEEYIEN+CAQIVA  PDIVITEKGVSDLAQHY +KA+IT
Sbjct:  251 ESQTNVELTNEQDWNTLLRMEEEYIENLCAQIVAMKPDIVITEKGVSDLAQHYFVKANIT 310
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A485KTS9_9STRA (T-complex protein 1 subunit gamma n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KTS9_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.140e-24
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            +SQTNVE+T E+DWNTLLR+EEEYIEN+CAQIVA  PDIVITEKGVSDLAQHY +KA+IT
Sbjct:  252 ESQTNVELTNEQDWNTLLRLEEEYIENLCAQIVAMKPDIVITEKGVSDLAQHYFVKANIT 311
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A8J2X7E5_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X7E5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.160e-24
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    4 SQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            S  NVE+TKEEDWNTLLR+EEEYIE++CAQIVA  PD+VITEKGVSDLAQHYLMKA+IT
Sbjct:  252 SNANVEITKEEDWNTLLRIEEEYIEHVCAQIVAARPDVVITEKGVSDLAQHYLMKANIT 310
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BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A7S2VZH4_9STRA (T-complex protein 1 subunit gamma n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZH4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.460e-24
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            ++QTNVE+T  EDWNT+LRMEEEY+EN+C +I+AF PDIVITEKGVSDLAQHYL KADIT
Sbjct:  269 ETQTNVEITNTEDWNTMLRMEEEYVENMCMEIIAFQPDIVITEKGVSDLAQHYLAKADIT 328
[Close]
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Match: A0A397DG51_9STRA (T-complex protein 1 subunit gamma n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DG51_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.060e-24
Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    1 QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLAQHYLMKADIT 180
            +SQTNVE+T E+DWNTLLR+EEEYIEN+CAQIVA  PDIVITEKGVSDLAQHY +KA+IT
Sbjct:  662 ESQTNVELTNEQDWNTLLRLEEEYIENLCAQIVAMKPDIVITEKGVSDLAQHYFVKANIT 721
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82059.19563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU47_ECTSI3.110e-3098.33T-complex protein 1 subunit gamma n=1 Tax=Ectocarp... [more]
A0A6S9KVF4_HETAK6.530e-2686.67T-complex protein 1 subunit gamma n=1 Tax=Heterosi... [more]
A0A7S2SP58_9STRA6.610e-2686.67T-complex protein 1 subunit gamma n=1 Tax=Rhizochr... [more]
A0A836CR16_9STRA9.610e-2686.67T-complex protein 1 subunit gamma n=1 Tax=Tribonem... [more]
A0A7S2FP00_9STRA1.380e-2586.67T-complex protein 1 subunit gamma n=1 Tax=Florenci... [more]
A0A2D4BDA5_PYTIN2.000e-2483.33T-complex protein 1 subunit gamma n=1 Tax=Pythium ... [more]
A0A485KTS9_9STRA4.140e-2481.67T-complex protein 1 subunit gamma n=10 Tax=Saprole... [more]
A0A8J2X7E5_9STRA4.160e-2483.05T-complex protein 1 subunit gamma n=1 Tax=Pelagomo... [more]
A0A7S2VZH4_9STRA4.460e-2478.33T-complex protein 1 subunit gamma n=1 Tax=Eucampia... [more]
A0A397DG51_9STRA5.060e-2481.67T-complex protein 1 subunit gamma n=4 Tax=Aphanomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82059contigEcto-sp13_S_contig82059:189..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score120.9
Seed ortholog evalue2.1e-25
Seed eggNOG ortholog2880.D8LU47
Preferred nameCCT3
Model size192
KEGG koko:K09495
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0001101,GO:0002199,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0005975,GO:0006457,GO:0006458,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006884,GO:0007154,GO:0007165,GO:0007166,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0008152,GO:0008361,GO:0009311,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009751,GO:0009826,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0009992,GO:0010033,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0014070,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019953,GO:0022414,GO:0022607,GO:0023052,GO:0030104,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032502,GO:0032535,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033043,GO:0033044,GO:0035036,GO:0036211,GO:0040007,GO:0042221,GO:0042493,GO:0042592,GO:0042623,GO:0043170,GO:0043209,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043933,GO:0044085,GO:0044183,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046677,GO:0046931,GO:0048518,GO:0048522,GO:0048589,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055082,GO:0060255,GO:0060341,GO:0060560,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070202,GO:0070203,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:0140096,GO:1901564,GO:1901700,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Exons1
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0459@1,KOG0364@2759
Cds size192
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.3046792-CDS-Ecto-sp13_S_contig82059:188..3801681464092.3046792-CDS-Ecto-sp13_S_contig82059:188..380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82059 189..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82059.19563.1prot_Ecto-sp13_S_contig82059.19563.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82059 189..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82059.19563.1

>prot_Ecto-sp13_S_contig82059.19563.1 ID=prot_Ecto-sp13_S_contig82059.19563.1|Name=mRNA_Ecto-sp13_S_contig82059.19563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
QSQTNVEVTKEEDWNTLLRMEEEYIENICAQIVAFHPDIVITEKGVSDLA
QHYLMKADITVRE*
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mRNA from alignment at Ecto-sp13_S_contig82059:189..380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82059.19563.1 ID=mRNA_Ecto-sp13_S_contig82059.19563.1|Name=mRNA_Ecto-sp13_S_contig82059.19563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82059:189..380+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTCCCAGACGAATGTGGAGGTAACCAAGGAGGAGGACTGGAACACTCT
GCTAAGGATGGAGGAGGAGTACATCGAGAACATCTGTGCTCAGATCGTGG
CCTTCCACCCCGACATCGTCATCACCGAAAAGGGGGTCAGCGACCTCGCA
CAGCACTACCTCATGAAGGCCGACATCACGGTGAGAGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82059:189..380+

>mRNA_Ecto-sp13_S_contig82059.19563.1 ID=mRNA_Ecto-sp13_S_contig82059.19563.1|Name=mRNA_Ecto-sp13_S_contig82059.19563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82059:189..380+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTCCCAGACGAATGTGGAGGTAACCAAGGAGGAGGACTGGAACACTCT
GCTAAGGATGGAGGAGGAGTACATCGAGAACATCTGTGCTCAGATCGTGG
CCTTCCACCCCGACATCGTCATCACCGAAAAGGGGGTCAGCGACCTCGCA
CAGCACTACCTCATGAAGGCCGACATCACGGTGAGAGAGTGA
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