mRNA_Ecto-sp13_S_contig8205.19561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8205.19561.1
Unique NamemRNA_Ecto-sp13_S_contig8205.19561.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8205.19561.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 1.380e-91
Identity = 204/234 (87.18%), Postives = 211/234 (90.17%), Query Frame = 1 
Query:  310 EAGSRGAGSGGISYGTLAVGAAGGRGSLAVDRDWQREREVERERVSSRRDPR---KTGSRESGVNYGKEADTRERDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLQELAGDSDENPPKSSGPKEKTGIFSYIKKTAAAINGSNPVASSSGRDDTTADGRAAGADGRAKAAAARAARPNSAALVNILRSDRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNF 1002
            EAG+RG GSGGISYG LAVGAAGGRGSLA+D+DWQREREVERER SSRRDPR     GSR+SGVNYGKEADTRE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LLQELA DSDE+PPKSSGPKEKTGIFSYIKKTAAAING+NP+A SSGRD TTADGRAAG         ARAARPNSAALVNILRSDRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNF
Sbjct:  106 EAGARGGGSGGISYGNLAVGAAGGRGSLAIDKDWQREREVERERASSRRDPRGGAAAGSRDSGVNYGKEADTREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLLQELAVDSDEDPPKSSGPKEKTGIFSYIKKTAAAINGNNPIAGSSGRDATTADGRAAGXXXXXXXXXARAARPNSAALVNILRSDRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNF 339
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8205.19561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE1.380e-9187.18C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8205contigEcto-sp13_S_contig8205:5416..6417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1002
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-21_006030.1
Cds size1002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.229887-CDS-Ecto-sp13_S_contig8205:5415..64171681464092.229887-CDS-Ecto-sp13_S_contig8205:5415..6417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8205 5416..6417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8205.19561.1prot_Ecto-sp13_S_contig8205.19561.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8205 5416..6417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8205.19561.1

>prot_Ecto-sp13_S_contig8205.19561.1 ID=prot_Ecto-sp13_S_contig8205.19561.1|Name=mRNA_Ecto-sp13_S_contig8205.19561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MKKQYRRRRADSESAGSDEEEDEEEGEEGEVVLEHKPSRKRERTSTRRQS
PERSHRSGGGSGRRSSSGGRTSGSRRRDGDDSSRKRRDRERDRDDEDSRH
RRREAGSRGAGSGGISYGTLAVGAAGGRGSLAVDRDWQREREVERERVSS
RRDPRKTGSRESGVNYGKEADTRERDRARDREKERERERVRERDRERERA
KERERDREKDRERDRLLQELAGDSDENPPKSSGPKEKTGIFSYIKKTAAA
INGSNPVASSSGRDDTTADGRAAGADGRAKAAAARAARPNSAALVNILRS
DRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNF
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mRNA from alignment at Ecto-sp13_S_contig8205:5416..6417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8205.19561.1 ID=mRNA_Ecto-sp13_S_contig8205.19561.1|Name=mRNA_Ecto-sp13_S_contig8205.19561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8205:5416..6417+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAAGCAGTATCGCCGCCGGCGGGCCGACTCTGAATCCGCAGGCTC
GGACGAGGAGGAGGACGAGGAGGAGGGAGAGGAGGGAGAGGTAGTGCTGG
AACATAAACCGTCGAGAAAGAGAGAGAGGACCTCAACGAGACGCCAGAGC
CCAGAGAGATCGCACCGCAGCGGTGGCGGCAGTGGACGGCGCAGTAGCAG
TGGTGGCAGAACATCGGGCAGCAGAAGACGAGACGGAGATGATAGCAGTA
GGAAGAGGAGAGACCGCGAGCGTGACCGAGACGATGAAGACAGCCGGCAC
CGCCGCAGGGAGGCAGGTAGTAGAGGAGCAGGATCTGGTGGCATCAGCTA
CGGAACCTTGGCGGTAGGGGCAGCTGGAGGTAGAGGGTCTCTTGCAGTCG
ACAGGGATTGGCAGCGGGAGCGAGAAGTGGAGAGAGAAAGGGTGAGCAGC
AGAAGAGACCCTCGAAAAACGGGCAGCAGGGAGAGCGGGGTGAACTACGG
AAAGGAAGCCGACACACGGGAGAGGGACCGGGCGCGAGATAGAGAGAAGG
AGCGGGAGCGGGAGAGGGTCCGGGAGAGGGATCGGGAAAGGGAGAGAGCC
AAGGAGAGAGAGAGGGATCGAGAGAAGGACAGAGAAAGGGACAGGCTGCT
GCAAGAATTGGCCGGTGACTCGGATGAGAATCCACCCAAATCGAGCGGCC
CAAAGGAGAAGACCGGCATCTTCTCCTACATCAAGAAGACAGCGGCGGCC
ATCAATGGCAGCAACCCGGTCGCCAGCAGCAGTGGCCGTGACGACACCAC
GGCAGACGGGAGGGCAGCGGGGGCGGACGGGAGGGCTAAAGCGGCGGCGG
CAAGGGCTGCGCGGCCGAATAGCGCTGCGCTGGTGAACATCCTTCGCAGC
GACCGCCGCACGAATATCCGGATGGATCGCGAACAGTTCGACGGGGCGCA
GACGCGGCTGAGGAAGCTCGCCCCAGAGGGAAACGATGTTTGCGACAACT
TC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8205:5416..6417+

>mRNA_Ecto-sp13_S_contig8205.19561.1 ID=mRNA_Ecto-sp13_S_contig8205.19561.1|Name=mRNA_Ecto-sp13_S_contig8205.19561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8205:5416..6417+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAAGCAGTATCGCCGCCGGCGGGCCGACTCTGAATCCGCAGGCTC
GGACGAGGAGGAGGACGAGGAGGAGGGAGAGGAGGGAGAGGTAGTGCTGG
AACATAAACCGTCGAGAAAGAGAGAGAGGACCTCAACGAGACGCCAGAGC
CCAGAGAGATCGCACCGCAGCGGTGGCGGCAGTGGACGGCGCAGTAGCAG
TGGTGGCAGAACATCGGGCAGCAGAAGACGAGACGGAGATGATAGCAGTA
GGAAGAGGAGAGACCGCGAGCGTGACCGAGACGATGAAGACAGCCGGCAC
CGCCGCAGGGAGGCAGGTAGTAGAGGAGCAGGATCTGGTGGCATCAGCTA
CGGAACCTTGGCGGTAGGGGCAGCTGGAGGTAGAGGGTCTCTTGCAGTCG
ACAGGGATTGGCAGCGGGAGCGAGAAGTGGAGAGAGAAAGGGTGAGCAGC
AGAAGAGACCCTCGAAAAACGGGCAGCAGGGAGAGCGGGGTGAACTACGG
AAAGGAAGCCGACACACGGGAGAGGGACCGGGCGCGAGATAGAGAGAAGG
AGCGGGAGCGGGAGAGGGTCCGGGAGAGGGATCGGGAAAGGGAGAGAGCC
AAGGAGAGAGAGAGGGATCGAGAGAAGGACAGAGAAAGGGACAGGCTGCT
GCAAGAATTGGCCGGTGACTCGGATGAGAATCCACCCAAATCGAGCGGCC
CAAAGGAGAAGACCGGCATCTTCTCCTACATCAAGAAGACAGCGGCGGCC
ATCAATGGCAGCAACCCGGTCGCCAGCAGCAGTGGCCGTGACGACACCAC
GGCAGACGGGAGGGCAGCGGGGGCGGACGGGAGGGCTAAAGCGGCGGCGG
CAAGGGCTGCGCGGCCGAATAGCGCTGCGCTGGTGAACATCCTTCGCAGC
GACCGCCGCACGAATATCCGGATGGATCGCGAACAGTTCGACGGGGCGCA
GACGCGGCTGAGGAAGCTCGCCCCAGAGGGAAACGATGTTTGCGACAACT
TC
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