mRNA_Ecto-sp13_S_contig8205.19560.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8205.19560.1
Unique NamemRNA_Ecto-sp13_S_contig8205.19560.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8205.19560.1 vs. uniprot
Match: A0A6H5KWT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWT2_9PHAE)

HSP 1 Score: 454 bits (1168), Expect = 6.220e-152
Identity = 249/295 (84.41%), Postives = 256/295 (86.78%), Query Frame = 1 
Query:   88 MASAAFACCLLSCFASRLAPPSHHDNACARRSLRPTALHYACHEWSAPTRSKPLPTSPSWSSGSR-----SRKGVHACLANGSGGGSTRLGYGRRRRDSTRLMGLRKPRGPDSSRSTGEDPDPEXXXXXGGSMRERMMSYAMPASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPTSSPRRTRSSQAPAPERRLTSSQQPGAFFDGVENLKEAERPTGTDATFDADFFAFREKGSLASVKRRREVERXXXXXXRGAGGGEGSAFKVELATQLGLPASSTYDEEATR 957
            MASAAFACCLLSCFASRLAPPSHHDNACARRSLRPTALHYA HEWSAPT SKPLPTSP WSS          K VHACLANGSG GSTRLGYGRRRRDSTRLMGLRKPRGPD SRS+GE+PDPE     GGSMRERM+SYAMPASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPTSSPRRTRSSQAPAP RRLTSSQQPGAFFDGV +LKEAERPT TDATFDADFFAFREK  LASVKRR     XXXXXX      +GSA KVELATQLGLPASSTYDE+ T+
Sbjct:    1 MASAAFACCLLSCFASRLAPPSHHDNACARRSLRPTALHYARHEWSAPTLSKPLPTSPRWSSSXXXXXXXGSKIVHACLANGSGDGSTRLGYGRRRRDSTRLMGLRKPRGPDGSRSSGENPDPEEEDNEGGSMRERMVSYAMPASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPTSSPRRTRSSQAPAPARRLTSSQQPGAFFDGVADLKEAERPTETDATFDADFFAFREKDLLASVKRRXXXXXXXXXXXXXXXXXKGSAVKVELATQLGLPASSTYDEDWTQ 295
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BLAST of mRNA_Ecto-sp13_S_contig8205.19560.1 vs. uniprot
Match: D8LEY6_ECTSI (J domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY6_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 2.580e-95
Identity = 173/192 (90.10%), Postives = 177/192 (92.19%), Query Frame = 1 
Query:  379 MGLRKPRGPDSSRSTGEDPDPEXXXXXGGSMRERMMSYAMPASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPTSSPRRTRSSQAPAPERRLTSSQQPGAFFDGVENLKEAERPTGTDATFDADFFAFREKGSLASVKRRREVERXXXXXXRGAGGGEGSAFKVELATQLGLPASSTYDEEAT 954
            MGLRKPRGPD SRS+GEDPDPEXXXXXGGSMRERMMSYAMPASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQP+SS RRTRSSQAPAPERRLTSSQQP AFFDGV +LKEAERPTGTDA FDADFFAFREK SLASVKRRREVERXXXXXX      +GSA KVELATQLGLPASSTYDE  T
Sbjct:    1 MGLRKPRGPDGSRSSGEDPDPEXXXXXGGSMRERMMSYAMPASKRRPPEEDDIWSKHSVFEFKSLNDPDTNACGYKGLSGQPSSSRRRTRSSQAPAPERRLTSSQQPAAFFDGVGDLKEAERPTGTDAAFDADFFAFREKDSLASVKRRREVERXXXXXXXXXXXXDGSAVKVELATQLGLPASSTYDELRT 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8205.19560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWT2_9PHAE6.220e-15284.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEY6_ECTSI2.580e-9590.10J domain-containing protein n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8205contigEcto-sp13_S_contig8205:356..5046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2223
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionDnaJ domain
Ec32 orthologEc-21_006040.1
Cds size1461
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8205.19560.1prot_Ecto-sp13_S_contig8205.19560.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8205 1031..4959 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.1398203-UTR-Ecto-sp13_S_contig8205:355..10301681464092.1398203-UTR-Ecto-sp13_S_contig8205:355..1030Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8205 356..1030 -
1681464092.192686-UTR-Ecto-sp13_S_contig8205:4959..50461681464092.192686-UTR-Ecto-sp13_S_contig8205:4959..5046Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8205 4960..5046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.1505976-CDS-Ecto-sp13_S_contig8205:1030..15621681464092.1505976-CDS-Ecto-sp13_S_contig8205:1030..1562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8205 1031..1562 -
1681464092.1603706-CDS-Ecto-sp13_S_contig8205:2728..27991681464092.1603706-CDS-Ecto-sp13_S_contig8205:2728..2799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8205 2729..2799 -
1681464092.1729157-CDS-Ecto-sp13_S_contig8205:3205..35811681464092.1729157-CDS-Ecto-sp13_S_contig8205:3205..3581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8205 3206..3581 -
1681464092.182804-CDS-Ecto-sp13_S_contig8205:4477..49591681464092.182804-CDS-Ecto-sp13_S_contig8205:4477..4959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8205 4478..4959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8205.19560.1

>prot_Ecto-sp13_S_contig8205.19560.1 ID=prot_Ecto-sp13_S_contig8205.19560.1|Name=mRNA_Ecto-sp13_S_contig8205.19560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=487bp
MASAAFACCLLSCFASRLAPPSHHDNACARRSLRPTALHYACHEWSAPTR
SKPLPTSPSWSSGSRSRKGVHACLANGSGGGSTRLGYGRRRRDSTRLMGL
RKPRGPDSSRSTGEDPDPEEEEDEGGSMRERMMSYAMPASKRRPPEEDDI
WSKHSVFEFKSLNDPDTNACGYKGLSGQPTSSPRRTRSSQAPAPERRLTS
SQQPGAFFDGVENLKEAERPTGTDATFDADFFAFREKGSLASVKRRREVE
RRRRSAARGAGGGEGSAFKVELATQLGLPASSTYDEEATRATTGGLRKGH
FKPNQARIFCFAPPTGWRSSDATRILLGTTSSESSSSSESSRSSRVAGTC
STPSVRPVPQLPQRRRKVVPVPRRAGRGLERARSEWIGSGRRQRRQRRQR
PGAAEGRSWTRIGKLWTLETPALVDFLSLGGCVYVCSALDVLKRAAVCDV
GAKSMPGSHDFRLRHVELDVFVKLKTSFFSLVRVAT*
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mRNA from alignment at Ecto-sp13_S_contig8205:356..5046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8205.19560.1 ID=mRNA_Ecto-sp13_S_contig8205.19560.1|Name=mRNA_Ecto-sp13_S_contig8205.19560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4691bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8205:356..5046- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACCCGGACTTTTTGACGAAGGTTGACCAGGGATCAAGTAACGCAATT
CTCCGCCACCGAGGTTCTTTTGGAAAAAAAGCCAAAGATGGCGTCAGCAG
CGTTCGCATGTTGCCTGCTGAGCTGCTTTGCCTCGAGGCTGGCGCCGCCA
TCGCATCATGACAACGCCTGTGCCCGCCGCTCACTACGGCCAACGGCGCT
GCACTACGCCTGCCATGAATGGTCCGCTCCAACTCGGTCGAAGCCGCTAC
CAACAAGTCCAAGCTGGAGCAGCGGCAGCAGGAGCAGGAAGGGTGTCCAT
GCATGTTTGGCCAACGGCAGCGGGGGCGGCAGCACGCGGTTGGGCTACGG
CCGACGACGCCGGGATTCAACGCGCTTGATGGGCCTCCGCAAGCCACGCG
GTCCAGACAGTTCTCGTAGCACCGGCGAAGATCCAGACCCAGAGGAGGAG
GAGGACGAGGGCGGCTCTATGAGGGAGAGGATGATGTCGTACGCGATGCC
GGCATCCAAGCGGAGACCCCCGGAGGAAGATGACATCTGGAGCAAGCACT
CCGTCTTCGAGTTCAAGAGGTACGGCCGGCAGCTTTTTTTTTTGCTTGGT
TGTTGCCGAGCGATGCTTTCTGTTGTTTGATCTAACTCTGGCACGTTCGC
TGTTGAGGGATAGATGCATAGATAGGCTGATGGCCTTTACATGTACATGT
AGGTTGATGACCGCACCGCCTGTAGCTCTCATTCGCCGGGAGCGGGGTGT
TCCAGCAGCGGGGTGTTTCGGTAGACACCGAAAGGTTGCGAGTCAGCCAG
GGGTGCGAACGATTTTCAAAGCGTAATTTCTCCACATCCGGAAGGCTACC
ACTGTCGAGAAGAACGGTTTTGAGAAGATGCCATCGAAAGCTTTCCTGAG
AAATATCAGTTGGTGCTCGCACCCTCCCGGTTGTGGAGAAATTACGCTTT
GAAAATCGATCGCACCCCCGTGCGCTGACTCTCAACCTTACGGTACAGCT
GTAAAGGACGATCGGACGAGATTGACCTCGAACAGTCCGGTATGGGCCCC
GGCTGACAAATCACCACTTCCTTACATCTTGCACAGGGCAGAAGGGAAAG
CGAGGGTTGGGGCTAGTCTACCCTTTGGTGCAAGCTTCTCTTGAGTTCAG
TGAGCGGCTTGCCGCCGGACACTGTCTTCCGTCGGTCGTCAGCACTCGTA
CAACTACTCGACAGCACACGACCTGTCTGTGTAACTGCTGTTAGGGTAGG
CCATTGTCAACACCAGTCACTGGTCATGCCACCCTAAGATGACAGCGGTA
CGTGGCTTGCCTACCCCAGGACGAACCGTCGTGCAGTTTCGCCCCCTGTC
AACCTGTTCGCTTCCTGGTGTGAGCCACAACAGCGGTACTGAGACCGTTC
GCGCAACTCTTGCTACATGCATCGTGCTCACCCCCCAACCAATCCTGCCG
CTGCCTCCACCCCAGCCTGAACGACCCCGACACGAACGCTTGTGGCTACA
AGGGCCTCAGCGGCCAACCGACCTCGTCTCCACGGAGGACCCGCTCCTCG
CAAGCACCGGCTCCAGAACGGCGTCTCACCTCCAGCCAACAACCGGGAGC
CTTCTTCGATGGCGTCGAAAACCTGAAGGAAGCAGAGCGACCAACAGGAA
CGGACGCTACCTTTGATGCCGATTTTTTCGCGTTCAGGGAGAAGGGCTCT
CTCGCGAGCGTAAAACGACGGCGTGAAGTGGAGCGACGCCGGCGTAGCGC
GGCTCGTGGTGCTGGAGGCGGCGAAGGGAGTGCTTTTAAGGTTGAGCTGG
CGACGCAGCTGGGCCTGCCCGCGAGTTCCACTTACGACGAGGTCTGGAGC
TACGCCTGCGTTTTCTGCGTAATTTGTCATTTTTGTGAAGGGGAAGTGTG
TGGGTGACGTTTACTTTTTTGGGTCTACAAGCGGGCTGACAGATCATTGA
TTGAAAATTTGCAAATGCTGGGGTGATGTGGCATGCCATGGAGTTGCCAC
CCTGTATCCCTCCACGCCAGGTGTTGGCAAGTCAATAGGTAGGCGTATCT
TTACTGTTCGCATCGACCGCGCTACCCGTCAACCAATGAAATGACGTCCA
GCGGGTAATATCAAGGTCCCTGGAAACCGCCAAACTTCGAAAAATGCACA
CTGCTCTAAATGCGAATGCCATTATGAATCTCTCCCCATATCCTTTCACA
GAGACACACATCAATAGCTCCACATACATGCCCTCGCCCGCATCTAGGAA
GCGACTAGAGCAACGACAGGAGGACTGCGAAAAGGGCACTTCAAACCGAA
CCAGGCCAGGATATTTTGGTATGCTGCATATCCTCCAAAATTGAAAATCG
TACAGCTATACTACGCAGCAGCAGCAGCAGTATAGACGAGTCCAATAAAC
AGCAGCTGCTGTAGTAACACATACACTATCATCATAGCCCTACACATACC
CTCGCCCGAACTTAGAGAGCCACTGATGCAAAGGTAGGTGTATGCTGGTG
TGCTTACGTGCTTGCGGGAAATGTGGGAAAATCACAGGAGCTGTAGTGAG
CCGGCAGGGCTCACATTGGGGAGGGGACAGAGAAGTACAGAAGTACAAGA
ACCAGCTATATGGGTATATTACACAAGCCCTCTCTGATTGTTTGATGTAC
TGATCTTTACGAGGTCTACAAGCCTCACCTGTCCTACCGGCTGCACCGCG
ACCACGCATCAACCCTTGTATGACCCTCTCTGTCCCCACCGTCCTGTCGC
AGGCAGCCCTCATGACCTACGGGTGGAGATAGCTGTTGTGTCTACACATT
TACACTCGCCTCTTCCTGCTGTACTTCTGTCTCTCTCTCCGCACTCTCTC
CTCCCTTTTATTTTGTTCGCCGAAAAAGGAAAAGCGCTAGACCCAAAGGG
GTCAACGGATGTATTTACGGTGGCTTTCCACCCCGAAATCCCCGAGTTTC
CGGGATGGTCTGTTGGCCTTGACCGTTCCACTCCGAACAAGCAAGGCACC
ATCCGTAGCCTGTGATGCCGGGAGGAAGGTTGTGTCGCCCTGGTCAGATT
AGGCTTTTTTTGGCGTTCTCAAGATTTGCTGGTGGAACGCCGGTGGTATC
TATGCCGTGCGGGCTTCACCTTTAGGGATAAATTCACGGGGGAGTGGTTG
GAGGAAGGCGCTCGGCACACCTTAAACACACAAATTTTTATCCCGCGACA
AGACTGACGTATTTTCATTGATCAGCCGGTTAGCGCGGTCCACGCTAATA
ATCAGCGCGAGTATTTCAGACCCATCCTACCAGAGGGGGAAAGAGTCAGA
AATTGGCATCTATTTTATTTGGCTTAGTACGAAAACACACATCAGTTGTG
AACAGAATCGCCCCACCACACGTTGCACATCTCGCCCAAACTCGCCCGCA
CACAAGCACGCATGCCCACGCTCACACTTGCACGCATTGCGCACCGGCGG
TCACACATCTTTGGTTGCCTCTTGTGCTTGGCAGCTTCGCACCGCCTACC
GGGTGGAGATCAAGCGATGCCACCCGGATCTTGCTGGGGACAACGAGTTC
CGAGTCAAGTTCCTCGAGCGAAAGTTCCAGAAGCTCCAGGGTTGCTGGGA
CATGTTCAACGCCGAGCGTACGGCCGGTTCCACAGCTACCGCAGCGGAGA
CGGAAGGTGGTGCCAGTACCCAGGAGGGCCGGTCGCGGGCTAGAGCGCGC
GCGAAGCGAGTGGATTGGGAGCGGCAGGCGGCAGCGGCGGCAGCGGCGGC
AGCGGCCGGGCGCAGCGGAAGGCCGGTCATGGACCCGGATCGGAAAGTTA
TGGACCCTGGAAACACCAGCTCTTGTTGATTTCTTGTCGTTGGGTGGCTG
TGTGTATGTGTGCTCAGCACTAGACGTGCTTAAGAGAGCAGCGGTGTGCG
ACGTTGGGGCGAAATCCATGCCTGGAAGTCATGACTTTAGACTTCGGCAT
GTTGAGTTGGATGTTTTTGTGAAATTGAAAACTAGTTTTTTTTCGCTTGT
TAGAGTTGCTACCTAGGATGTATTTGTTTTGTGCTGTTTAATTGTCTATG
CTCGTTTCGAGAGGTGTTGCGAGACCAAGCATGAGGCTGTATCAACAGCA
GCAGCAAAATAATGGGTCTGTAGAAGCTTGATTCATTCGGTGAAATGGAC
GGGTCATGAGGCTTACTTTCGAGCAGCCTTTTGTTTATTGATGTCAACGG
TGATGTTGTGGATACTGGTACATGGGGTTGGCGATTTCAAAAGACACGGG
ACACGCCCTTGTATTTTTGTTTTTGTCTTGTTTGGGCTGACGGAGCAGGG
GTCGGCCTGCTGAGCGTTGTGGAAAGGTTTACACATGGGTTGATTTTCTT
GTATTTGGTCTTATCCGGCCGAATGTAACAGGTCGGGCAGACCCGAGTGG
GCTAGTTTGGGGGCGGTTGTTTTTTTGTTTTGCCTATGGGTGTTTTTGTG
ATTGTGCATACGACACTGCGGGTACTCTCGCGCTCTTTGTGGCGTTTCGA
ATGATCCAGGGTCCGCGTAATGTTTACGGCAAGGCTTATCTTGCCCGATG
TTAATCACTCACTTCGAGCAGTTCACACGAGGCGTGGCCAGAGCTTTTTT
GTTCAACCCCCCACGCTTGTTCAAACCGACGTTTTGCAATATACTGAACA
GTGAGGAACGATCTTCGTCTAACAGACAAATAAAGCCTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8205:356..5046-

>mRNA_Ecto-sp13_S_contig8205.19560.1 ID=mRNA_Ecto-sp13_S_contig8205.19560.1|Name=mRNA_Ecto-sp13_S_contig8205.19560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1461bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8205:356..5046- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCAGCAGCGTTCGCATGTTGCCTGCTGAGCTGCTTTGCCTCGAG
GCTGGCGCCGCCATCGCATCATGACAACGCCTGTGCCCGCCGCTCACTAC
GGCCAACGGCGCTGCACTACGCCTGCCATGAATGGTCCGCTCCAACTCGG
TCGAAGCCGCTACCAACAAGTCCAAGCTGGAGCAGCGGCAGCAGGAGCAG
GAAGGGTGTCCATGCATGTTTGGCCAACGGCAGCGGGGGCGGCAGCACGC
GGTTGGGCTACGGCCGACGACGCCGGGATTCAACGCGCTTGATGGGCCTC
CGCAAGCCACGCGGTCCAGACAGTTCTCGTAGCACCGGCGAAGATCCAGA
CCCAGAGGAGGAGGAGGACGAGGGCGGCTCTATGAGGGAGAGGATGATGT
CGTACGCGATGCCGGCATCCAAGCGGAGACCCCCGGAGGAAGATGACATC
TGGAGCAAGCACTCCGTCTTCGAGTTCAAGAGCCTGAACGACCCCGACAC
GAACGCTTGTGGCTACAAGGGCCTCAGCGGCCAACCGACCTCGTCTCCAC
GGAGGACCCGCTCCTCGCAAGCACCGGCTCCAGAACGGCGTCTCACCTCC
AGCCAACAACCGGGAGCCTTCTTCGATGGCGTCGAAAACCTGAAGGAAGC
AGAGCGACCAACAGGAACGGACGCTACCTTTGATGCCGATTTTTTCGCGT
TCAGGGAGAAGGGCTCTCTCGCGAGCGTAAAACGACGGCGTGAAGTGGAG
CGACGCCGGCGTAGCGCGGCTCGTGGTGCTGGAGGCGGCGAAGGGAGTGC
TTTTAAGGTTGAGCTGGCGACGCAGCTGGGCCTGCCCGCGAGTTCCACTT
ACGACGAGGAAGCGACTAGAGCAACGACAGGAGGACTGCGAAAAGGGCAC
TTCAAACCGAACCAGGCCAGGATATTTTGCTTCGCACCGCCTACCGGGTG
GAGATCAAGCGATGCCACCCGGATCTTGCTGGGGACAACGAGTTCCGAGT
CAAGTTCCTCGAGCGAAAGTTCCAGAAGCTCCAGGGTTGCTGGGACATGT
TCAACGCCGAGCGTACGGCCGGTTCCACAGCTACCGCAGCGGAGACGGAA
GGTGGTGCCAGTACCCAGGAGGGCCGGTCGCGGGCTAGAGCGCGCGCGAA
GCGAGTGGATTGGGAGCGGCAGGCGGCAGCGGCGGCAGCGGCGGCAGCGG
CCGGGCGCAGCGGAAGGCCGGTCATGGACCCGGATCGGAAAGTTATGGAC
CCTGGAAACACCAGCTCTTGTTGATTTCTTGTCGTTGGGTGGCTGTGTGT
ATGTGTGCTCAGCACTAGACGTGCTTAAGAGAGCAGCGGTGTGCGACGTT
GGGGCGAAATCCATGCCTGGAAGTCATGACTTTAGACTTCGGCATGTTGA
GTTGGATGTTTTTGTGAAATTGAAAACTAGTTTTTTTTCGCTTGTTAGAG
TTGCTACCTAG
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