mRNA_Ecto-sp13_S_contig8204.19559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8204.19559.1
Unique NamemRNA_Ecto-sp13_S_contig8204.19559.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8204.19559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8204contigEcto-sp13_S_contig8204:1239..2809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1571
Hectar predicted targeting categorysignal peptide
Exons1
Cds size639
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.0850012-UTR-Ecto-sp13_S_contig8204:1238..18851681464092.0850012-UTR-Ecto-sp13_S_contig8204:1238..1885Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8204 1239..1885 +
1681464092.1096973-UTR-Ecto-sp13_S_contig8204:2524..28091681464092.1096973-UTR-Ecto-sp13_S_contig8204:2524..2809Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8204 2525..2809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464092.0970452-CDS-Ecto-sp13_S_contig8204:1885..25241681464092.0970452-CDS-Ecto-sp13_S_contig8204:1885..2524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8204 1886..2524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8204.19559.1prot_Ecto-sp13_S_contig8204.19559.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8204 1886..2524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8204.19559.1

>prot_Ecto-sp13_S_contig8204.19559.1 ID=prot_Ecto-sp13_S_contig8204.19559.1|Name=mRNA_Ecto-sp13_S_contig8204.19559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MDVSECFLTSSVFLSFFISRFVVSCSRLYSFTAIHSHDLRCTHIVFFEFF
FCCFRSGSACFAHLVAFCRENERMSKRNKGGRTDSRSSCLVYVCVVLHVS
DGVGRITVCCGELDVVAWWWRNGTLLTPFRLPPTQHDKQTKFFGTTSSPY
VLSVGGRVCSSLGLLVCSDELVHFFVFVLCGVRNRGCLLFFRFFHVMWAQ
SQVNGARGDVII*
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mRNA from alignment at Ecto-sp13_S_contig8204:1239..2809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8204.19559.1 ID=mRNA_Ecto-sp13_S_contig8204.19559.1|Name=mRNA_Ecto-sp13_S_contig8204.19559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1571bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8204:1239..2809+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTCTATCATAATCCATGCGTTGCTTGTTGAATTTAGTCTTATTGCTGC
GGTGCGCGCCGTTCGTTGTCAGCGGCGTCCCGCCCTTTGTGTTTTGCGTG
AGAGCGAGAGAGGGAACGAGAGGGGGGGACCGACCAGTAATGGGCGTGTC
TTTGCGTTCTTTCTTGATGTGCGGGAGGGGGCGACGAGGGGGTAGGCGCT
GAGTCAGGAGAGTGAACTCTCGGTCCTCACGCAACGATGATAGCACATGG
AGAGACAAATTGGTCAGTTGCGTCAGCACTGAGGCACAGCAAGAAATTCT
AGGTGGGCTCCGTCTCCGTGCTGCTGCGTTCAAACGCACTTTTGATGATC
TACGCTTGGTTGTTTTGGTACACAGTGGACAATTGTCTCCGTCCGACACA
TCATTCTTGGTGCAACCACGCGGTTTGAGTGAATCCCCCGAAGTGGCTCG
AAAATTGACATCTCGAGGCTTCCTCTTTCTTTTTGTGGACTTGTTGAAGA
CCTTTCTATGCCTCCCCCCCCCCCCGCCCTCCTGAAGCCGGCGGCGGCTT
CTTCTCGTTTGATCCTGGCCTCTTTTGGGACGTTCTCCCGTGTCTGATCT
GATCGTGGATTCGTCGACTGAATGCATGAGTATCTGCACGTGATTTTATG
GATGTGTCGGAATGCTTTTTGACCTCTTCAGTTTTTTTAAGCTTTTTCAT
ATCGCGCTTCGTCGTCAGTTGCTCGCGTCTCTATTCGTTCACTGCAATTC
ATTCACACGATCTTCGTTGCACGCACATTGTTTTTTTCGAGTTTTTTTTT
TGTTGCTTTCGTAGTGGGTCGGCGTGTTTCGCGCACCTCGTGGCTTTTTG
CAGGGAAAACGAACGGATGAGCAAAAGGAACAAAGGGGGGCGCACCGACT
CGCGGTCGTCGTGTCTCGTCTATGTGTGTGTTGTTCTGCATGTTTCGGAC
GGAGTTGGACGAATTACCGTGTGTTGTGGAGAACTCGATGTCGTCGCGTG
GTGGTGGCGAAACGGAACACTTTTGACTCCGTTTCGACTCCCCCCCACGC
AACACGACAAACAAACCAAGTTTTTTGGAACAACATCATCGCCTTACGTC
TTGAGTGTAGGCGGTCGAGTATGCTCGAGCTTGGGGTTGTTGGTGTGCTC
TGATGAACTCGTGCATTTTTTTGTCTTTGTCTTGTGTGGGGTTAGAAATC
GTGGCTGCCTGTTGTTTTTTCGTTTTTTCCACGTGATGTGGGCACAAAGC
CAAGTAAACGGGGCCCGTGGTGACGTGATAATATAAGATTTTTTCTTGTT
TCTTTTTTTTGCTTTGCTCTTTGGATTTGTTTCCGTCTTTCTTCTTCTGC
GTTTTGTGGCGGTATATTCGCTGTTTGCTGTGCTTGGGCGGCTGGTGAGC
TGATGAATGAGTTACTTACCACGCTCCATTCTGTGATCAGTCAGGCGACG
AGGCTCAACCACACCCGGACGGACGGGTGGTGTCTCTTATTCTTGTTGCT
GATGTCGAGTCGATGGATCCTCTCGATACACTCAGTATTTGTCTTCCAAC
TCGCACTGAATCATCTCAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8204:1239..2809+

>mRNA_Ecto-sp13_S_contig8204.19559.1 ID=mRNA_Ecto-sp13_S_contig8204.19559.1|Name=mRNA_Ecto-sp13_S_contig8204.19559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8204:1239..2809+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGTGTCGGAATGCTTTTTGACCTCTTCAGTTTTTTTAAGCTTTTT
CATATCGCGCTTCGTCGTCAGTTGCTCGCGTCTCTATTCGTTCACTGCAA
TTCATTCACACGATCTTCGTTGCACGCACATTGTTTTTTTCGAGTTTTTT
TTTTGTTGCTTTCGTAGTGGGTCGGCGTGTTTCGCGCACCTCGTGGCTTT
TTGCAGGGAAAACGAACGGATGAGCAAAAGGAACAAAGGGGGGCGCACCG
ACTCGCGGTCGTCGTGTCTCGTCTATGTGTGTGTTGTTCTGCATGTTTCG
GACGGAGTTGGACGAATTACCGTGTGTTGTGGAGAACTCGATGTCGTCGC
GTGGTGGTGGCGAAACGGAACACTTTTGACTCCGTTTCGACTCCCCCCCA
CGCAACACGACAAACAAACCAAGTTTTTTGGAACAACATCATCGCCTTAC
GTCTTGAGTGTAGGCGGTCGAGTATGCTCGAGCTTGGGGTTGTTGGTGTG
CTCTGATGAACTCGTGCATTTTTTTGTCTTTGTCTTGTGTGGGGTTAGAA
ATCGTGGCTGCCTGTTGTTTTTTCGTTTTTTCCACGTGATGTGGGCACAA
AGCCAAGTAAACGGGGCCCGTGGTGACGTGATAATATAA
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