mRNA_Ecto-sp13_S_contig8203.19558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8203.19558.1
Unique NamemRNA_Ecto-sp13_S_contig8203.19558.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8203.19558.1 vs. uniprot
Match: D7FGQ7_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ7_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 3.100e-49
Identity = 119/211 (56.40%), Postives = 126/211 (59.72%), Query Frame = 1 
Query:    4 YTNGLKLALERGSIEGYGNLFERIGKEPKKVVQRLPYLPGFLWPDKAETIIEEVSRPRADICRCRRRLLPGWKVPEAPKEVVRDLPPRRGLRQNRRLLPPRQPKHAGQAASPPSPRPYETKKELQSIHPSSSVGASTTNGGRGSASDAMPSVVGGGAAAWGGPRGLGGSTAGTEQADGSGSGGDGPLGSDATQQGSNKKRRVADGSDVDSG 636
            YTNGLKLALERG I GYGNLFERIG EPKKV QRLPYLPGFLWPDKAETI EE  R R    R RRRLLPGW+VP APKEV RDLP   G         P   +  G       P     +K   ++ PS                             WGGPRG GGSTAGTEQAD SG GGDG LG DA QQG NK+R+VADGSD DSG
Sbjct:   91 YTNGLKLALERGYIAGYGNLFERIGNEPKKVAQRLPYLPGFLWPDKAETIFEENWRSR----RRRRRLLPGWRVPGAPKEV-RDLPSTEGNAPEPVASSPAATEARGTCDVTVEPEALRDEKGA-AVLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGGPRGSGGSTAGTEQADASGPGGDGALGGDAAQQGPNKERKVADGSDADSG 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8203.19558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGQ7_ECTSI3.100e-4956.40Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8203contigEcto-sp13_S_contig8203:2992..6339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score184.9
Seed ortholog evalue4.3e-44
Seed eggNOG ortholog2880.D7FGQ7
Model size1004
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1778@2759
Ec32 ortholog descriptionCBP-type histone acetyltransferase domain protein
Ec32 orthologEc-04_001240.1
EC2.3.1.48
Cds size696
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8203.19558.1prot_Ecto-sp13_S_contig8203.19558.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8203 4467..6339 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.9274049-UTR-Ecto-sp13_S_contig8203:2991..30281681464091.9274049-UTR-Ecto-sp13_S_contig8203:2991..3028Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8203 2992..3028 -
1681464091.9540584-UTR-Ecto-sp13_S_contig8203:3341..34341681464091.9540584-UTR-Ecto-sp13_S_contig8203:3341..3434Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8203 3342..3434 -
1681464091.9665158-UTR-Ecto-sp13_S_contig8203:3776..38931681464091.9665158-UTR-Ecto-sp13_S_contig8203:3776..3893Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8203 3777..3893 -
1681464091.985303-UTR-Ecto-sp13_S_contig8203:4405..44661681464091.985303-UTR-Ecto-sp13_S_contig8203:4405..4466Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8203 4406..4466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.998239-CDS-Ecto-sp13_S_contig8203:4466..45091681464091.998239-CDS-Ecto-sp13_S_contig8203:4466..4509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8203 4467..4509 -
1681464092.0124395-CDS-Ecto-sp13_S_contig8203:4781..48341681464092.0124395-CDS-Ecto-sp13_S_contig8203:4781..4834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8203 4782..4834 -
1681464092.0342464-CDS-Ecto-sp13_S_contig8203:5148..55601681464092.0342464-CDS-Ecto-sp13_S_contig8203:5148..5560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8203 5149..5560 -
1681464092.052647-CDS-Ecto-sp13_S_contig8203:6151..63391681464092.052647-CDS-Ecto-sp13_S_contig8203:6151..6339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8203 6152..6339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8203.19558.1

>prot_Ecto-sp13_S_contig8203.19558.1 ID=prot_Ecto-sp13_S_contig8203.19558.1|Name=mRNA_Ecto-sp13_S_contig8203.19558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
RYTNGLKLALERGSIEGYGNLFERIGKEPKKVVQRLPYLPGFLWPDKAET
IIEEVSRPRADICRCRRRLLPGWKVPEAPKEVVRDLPPRRGLRQNRRLLP
PRQPKHAGQAASPPSPRPYETKKELQSIHPSSSVGASTTNGGRGSASDAM
PSVVGGGAAAWGGPRGLGGSTAGTEQADGSGSGGDGPLGSDATQQGSNKK
RRVADGSDVDSGEPEQQRWLRPRGPKVDEDC*
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mRNA from alignment at Ecto-sp13_S_contig8203:2992..6339-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8203.19558.1 ID=mRNA_Ecto-sp13_S_contig8203.19558.1|Name=mRNA_Ecto-sp13_S_contig8203.19558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8203:2992..6339- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATACACCAACGGCCTCAAATTGGCACTGGAGCGAGGGTCCATCGAAGG
CTATGGTAACCTCTTCGAGCGCATTGGCAAGGAGCCGAAGAAGGTAGTAC
AACGGCTGCCGTATTTGCCGGGTTTCCTCTGGCCTGATAAAGCGGAAACC
ATTATCGAGGAGGTGAGCAGGCCAAGGGCTGATATCTGGTATGCCCTAGC
GGTTACGACCCGCAACAAATTGTTTTACCGGTTCCCCGAAGCAGCTGCCG
GGGAGGGCAGAGACACTATATCCAGAGTCTTAGAAGAACGACCATAACCA
AACCGTGTTCAGAAGCCGAAACTCCCTCGAAGTGAGAGGGTGGGGTCAAA
AGGACCCCACGGACAACTTTTACTGGAGCCAAAATTAAGCCACTAAATAG
GCAGGTCAGCGTTGACTTGTAAAACGACTTGGTTTTGGATTCTACAGTAT
CAAATTGATTCGCTATTGCTATTGCATGCACTTCGCCCCATGATCCTGCG
GCGCAAAGTCGGCCTCGTGAGGGAAACGAACACTAGACGCGCGAGATATC
TAACGGTATTGTGTTCAATCCGCAAGCTTTTATGCGCAAGCGTTCGCCGG
CTGAGGTCTCTCATTCTCTTCCACTAAAGAGAACACCACCTGAGAAGGCA
GGGGAATCAAGTCAAGCGTTTTTCATTACGTTCAACCCATTGATCACGTC
TCTTCCCATTCTTGACTCTGCTCGTGCGCCCTTCCTCCCCTCCCCCCGTG
GCAACATCTTTCCAAAGGAACTCGAGAAGTCGCTGTCGGCGGCGGCTACT
ACCGGGGTGGAAAGTGCCTGAGGCACCGAAGGAAGTTGTTCGGGACCTTC
CTCCACGGAGAGGGTTGCGCCAGAACCGGCGGCTTCTTCCCCCGCGGCAA
CCCAAGCACGCGGGACAGGCGGCGTCCCCGCCGAGCCCGAGGCCCTACGA
GACGAAAAAGGAGCTGCAGTCCATCCATCCATCGTCATCAGTGGGGGCCA
GTACCACCAACGGAGGAAGAGGATCCGCGTCGGACGCCATGCCGTCCGTC
GTCGGCGGGGGCGCAGCGGCTTGGGGAGGGCCGCGTGGTCTTGGAGGGTC
CACTGCGGGGACTGAGCAAGCCGACGGGTCAGGTTCTGGAGGTGATGGAC
CACTCGGGAGCGACGCCACCCAACAGGGGTCGAACAAGAAGGTATGCCCC
GTTTAATGCAAAATCACTCGTCTACACAGAGGTGGAGCTGTCTTGAATGG
AAATGAAACGTTCGTTCACGTCGAAAACTCCGCCGTGGGTCAGAGGTGTT
GGTGTCTGCTCGTGCCTCGCTCCGTGCAGTTTGTCGCTCCCGCGAGGCTC
GGGGTAGGCCGTCCTCCCTCGCACCGCCGCCCACCGCGGTCAAACCAAGG
CTACCACTCTCTGTGCGCCTGCTAAACAAACCACGGCGGCTCTTTCGCTC
CCATGCCGTTCCTGGCGCCCATCGCTTCCATGCTCTCGGCTGTCGACCAC
TTCAGAGGAGGGTTGCTGACGGAAGCGACGTCGACTCCGGTGAGCCAGAG
CAACAGAGGTACGTAGTTGTGTTTGAGAATCAATTCATTCTCGCGTTGTT
CATCGCGGGGCACTCGACAGACAGTGAAACCACACGCTTACCTCAGACCG
GCAGCTTCGTAGTGGCAGGCCCCGTTTCGCCTCCGAACGTCTGCCTCATG
CAGGGGGTGTATGTCAAAGTGCGCCGCTCATTGCGATTCGTTTGGCTCTT
CCTTCATCTGCCGCTTGTGCCTCGAACCCCATATCGTCTGTCTTACCTGA
ATGATTGCAAGTGCTTATTGGTCTGCACAGGTGGTTGCGACCCCGTGGTC
CTAAAGTTGATGAAGACTGTTGAGCGCTACAAGGACTCGCTTTTTGCCGT
ATCCCTCTCCAGCGGCAAGGCTGACGACGAAGAGGTGAGAGCACGGAAAA
GTCGCACTACCAGCGACAGATGCTCAGTGACATGTGGCGTGGTTGACGCT
TGGGGTTAGCTCACAAGTAGGTGCGTCATACGACCATTGAGGTTGAAACG
AATGGCGCTTGTCATGACGAGCCTGGATGAAACGTGTCCGCTTTAATGGT
TTTGTCTAGGCCAGCAACAGGTTCATTATAGTCTCCGGCAGGAGCTTGTG
CCTGTGTCTGAGGGAATTCAGGTTGTTTCAACGCCATGGGTTGGGTGTGC
GTCTCAGAGCCTTCAAAAGACGTTGCACGATGAACGACCAAGTATCGGGG
AGTTCGGCTTACTTGTTGTGAAGCACTTGAAACATTGGTCCACATATGGC
TTCTGACTTAGCAATTGTAGCTCTACTGCTGGTTAACTCGATCTACGGCG
GGTTAACTCCATCATTTCTTGATCACCACTGTACTACATTGGAATGGTCG
CCCCGCCCCACCACTGTCGGTTTCACGAAACGCGTGTTTTTTTCAGCAAG
AAATATTGTCTTCCACGACGATCGGCGAGGGAGGCGGAGGATCTAAGGAC
GACGGAAATCCTTGCGCCGAGGCGAGAAAGGAAAACGCTGCAAGGGAAAA
AGCCTTTCCTGCTGTTCCCGATCGGGGGCCTCTGACTGAATTGACCCCCT
CCACCAAGCTAGGGAGACACAGAATCTCACATTGTCGATAGATTGCAAGC
AATGATGTTGGACGGTGTTGATGGAAGTTTACCGTATCTTCCGCGTCATT
TCCGAAAACGGCTAGGGGCAGAATCCCCACCCCAAAACAATATCGCATCA
GAAGCGTTGCGACACCAAATTTAACCTATAGAGGTGAACGGTAGAATGAT
TGGCTTGAGGAGACAGGGCATGACGGAATGAAAACGTGCGTCGAACACAA
TCTGGAAATTGGCGTGGGACCAACTAATGTAGCGTTTCCCCACGAACTTC
CACAGATGCTCAAGACGAGAGACGAATTTCTGAGTTGGTGCAGAAGTCAG
AACTACCAGTTCGGCACGCTGGCAAGAGCGAAGCACTCCACCCTGATGGT
AAGCGTTTGTTGACGGACTGGGAGCAATCAGGGGCACCGTGCTGCAGAGC
TATCACCCTACTTCCCCTCCTTGGTAGCAGTAGTCTATTTAGCGGCGACC
GATGCATTTTCACCTGAATCATCTCTTGTGTGTAATCTGTAGGGACCGAT
GAATCTTGGTCAAAACCAAAGGCAAAGACACGTGTGATGACAGCAACGCT
TCCGCTTCCTACCAGGTCCGTACACAAGCGCGATCATAAATTTCCTACGT
CTGTTCTCATCATACCGCTTCCTCCGTTTCCGACGTGCGTTCCCGTGCAC
ACACATGGCAGATTTTTCACGACATCCAGAACGAGGAGAAGAAGTAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8203:2992..6339-

>mRNA_Ecto-sp13_S_contig8203.19558.1 ID=mRNA_Ecto-sp13_S_contig8203.19558.1|Name=mRNA_Ecto-sp13_S_contig8203.19558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8203:2992..6339- (Ectocarpus species13 EcNAP12_S_4_19m)
AGATACACCAACGGCCTCAAATTGGCACTGGAGCGAGGGTCCATCGAAGG
CTATGGTAACCTCTTCGAGCGCATTGGCAAGGAGCCGAAGAAGGTAGTAC
AACGGCTGCCGTATTTGCCGGGTTTCCTCTGGCCTGATAAAGCGGAAACC
ATTATCGAGGAGGTGAGCAGGCCAAGGGCTGATATCTGTCGCTGTCGGCG
GCGGCTACTACCGGGGTGGAAAGTGCCTGAGGCACCGAAGGAAGTTGTTC
GGGACCTTCCTCCACGGAGAGGGTTGCGCCAGAACCGGCGGCTTCTTCCC
CCGCGGCAACCCAAGCACGCGGGACAGGCGGCGTCCCCGCCGAGCCCGAG
GCCCTACGAGACGAAAAAGGAGCTGCAGTCCATCCATCCATCGTCATCAG
TGGGGGCCAGTACCACCAACGGAGGAAGAGGATCCGCGTCGGACGCCATG
CCGTCCGTCGTCGGCGGGGGCGCAGCGGCTTGGGGAGGGCCGCGTGGTCT
TGGAGGGTCCACTGCGGGGACTGAGCAAGCCGACGGGTCAGGTTCTGGAG
GTGATGGACCACTCGGGAGCGACGCCACCCAACAGGGGTCGAACAAGAAG
AGGAGGGTTGCTGACGGAAGCGACGTCGACTCCGGTGAGCCAGAGCAACA
GAGGTGGTTGCGACCCCGTGGTCCTAAAGTTGATGAAGACTGTTGA
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