mRNA_Ecto-sp13_S_contig8203.19557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8203.19557.1
Unique NamemRNA_Ecto-sp13_S_contig8203.19557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8203.19557.1 vs. uniprot
Match: D7FGQ6_ECTSI (Sel1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ6_ECTSI)

HSP 1 Score: 258 bits (659), Expect = 6.170e-81
Identity = 194/250 (77.60%), Postives = 194/250 (77.60%), Query Frame = 1 
Query:    1 LQQQCRDREAGGRRPSVTSDQAGPLAPHPRRSSDPSASAIPDNGSDSKINARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------KQPYKYVPKRDGPLPTDTVGRPSTSSNSQAAEVPAAWGKTERNSQDFPHQGAADDAASPTGARTRGPASAPWTPPPPRDRKNSLLLKPTPQAIARVKAAVERRKKLQAAAASAATATDARNPDGLPPAAER 696
            LQQQCRDREAGGRRPSVT DQAGPLAPH RRSSDPSASAIP            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                               KQPYKYVPKRDGPLPTDT GRPSTSSNSQAAE PAA GK  RNSQD P QGAADDAASPTGART GPASAPW PPPPRDRKNSLLLKPTPQAIARVKAAVERRKKLQAAAASAA ATDARNPDGLP AAER
Sbjct:  204 LQQQCRDREAGGRRPSVTGDQAGPLAPHLRRSSDPSASAIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATRGNPRANSQNISPESAAASASRRSSSPSKQPYKYVPKRDGPLPTDTTGRPSTSSNSQAAEGPAAGGKIGRNSQDMPQQGAADDAASPTGARTGGPASAPWIPPPPRDRKNSLLLKPTPQAIARVKAAVERRKKLQAAAASAAPATDARNPDGLPTAAER 453
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8203.19557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGQ6_ECTSI6.170e-8177.60Sel1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8203contigEcto-sp13_S_contig8203:3..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score263.1
Seed ortholog evalue1.3e-67
Seed eggNOG ortholog2880.D7FGQ6
Model size699
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
Ec32 ortholog descriptionSel1-like
Ec32 orthologEc-04_001250.1
Cds size699
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.8732886-CDS-Ecto-sp13_S_contig8203:2..2861681464091.8732886-CDS-Ecto-sp13_S_contig8203:2..286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8203 3..286 +
1681464091.8946426-CDS-Ecto-sp13_S_contig8203:501..9161681464091.8946426-CDS-Ecto-sp13_S_contig8203:501..916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8203 502..916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8203.19557.1prot_Ecto-sp13_S_contig8203.19557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8203 3..916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8203.19557.1

>prot_Ecto-sp13_S_contig8203.19557.1 ID=prot_Ecto-sp13_S_contig8203.19557.1|Name=mRNA_Ecto-sp13_S_contig8203.19557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
LQQQCRDREAGGRRPSVTSDQAGPLAPHPRRSSDPSASAIPDNGSDSKIN
ARRRSSGRRSSSDPLVTPPPPEGAPPPTATRGNISPESATTSASRRSSSS
SKQPYKYVPKRDGPLPTDTVGRPSTSSNSQAAEVPAAWGKTERNSQDFPH
QGAADDAASPTGARTRGPASAPWTPPPPRDRKNSLLLKPTPQAIARVKAA
VERRKKLQAAAASAATATDARNPDGLPPAAER*
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mRNA from alignment at Ecto-sp13_S_contig8203:3..916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8203.19557.1 ID=mRNA_Ecto-sp13_S_contig8203.19557.1|Name=mRNA_Ecto-sp13_S_contig8203.19557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8203:3..916+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACAGCAGCAGTGCAGGGACCGCGAAGCAGGCGGCAGGCGGCCGTCGGT
CACAAGTGACCAGGCTGGACCCCTGGCCCCGCACCCAAGGCGGTCGTCAG
ATCCCTCGGCCTCCGCTATCCCCGATAACGGTAGTGATAGCAAGATCAAC
GCGAGGCGAAGGTCGTCTGGACGGCGTTCGTCGTCCGACCCTCTCGTTAC
CCCACCCCCGCCGGAAGGAGCGCCGCCTCCTACGGCTACGAGAGGAAACA
TCAGTCCGGAATCAGCAACCACCTCCGCGTCTAGGTAAATACCTACTGAC
CTCTGTCGGCGTAGGATAAGGAGCCTACTCCCTTCGTTCGAATACAACAG
CAGATTTCCTGGCGTAGGCTGCCCCAAGCCTATGGCGATTTCAAGATTTT
GCTTTCCTTTGCCCTTCCCCCGAATCCTTACCCCGACGGCTTCGCCATCG
GTTTGATGTTGAATCCCCCCGAATGCCTCTTCCCACCCTGCCGCCACAGA
CGATCGTCTTCGTCGTCGAAGCAGCCGTACAAATATGTTCCGAAACGTGA
CGGACCACTCCCAACCGACACCGTCGGCCGTCCGAGCACGAGCAGCAACA
GCCAAGCGGCAGAGGTTCCAGCGGCGTGGGGGAAAACCGAGCGAAATAGC
CAAGATTTTCCCCATCAGGGGGCGGCCGACGACGCCGCGAGTCCGACGGG
GGCGCGGACCCGGGGGCCCGCATCTGCGCCCTGGACACCTCCCCCGCCCC
GGGACCGAAAGAACAGCTTGCTGTTGAAGCCGACGCCGCAGGCTATTGCT
CGGGTCAAGGCGGCCGTGGAGCGGCGGAAGAAGCTACAGGCTGCCGCCGC
GTCCGCCGCTACAGCTACCGACGCGAGAAATCCCGACGGCTTGCCGCCGG
CGGCGGAGAGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8203:3..916+

>mRNA_Ecto-sp13_S_contig8203.19557.1 ID=mRNA_Ecto-sp13_S_contig8203.19557.1|Name=mRNA_Ecto-sp13_S_contig8203.19557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8203:3..916+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACAGCAGCAGTGCAGGGACCGCGAAGCAGGCGGCAGGCGGCCGTCGGT
CACAAGTGACCAGGCTGGACCCCTGGCCCCGCACCCAAGGCGGTCGTCAG
ATCCCTCGGCCTCCGCTATCCCCGATAACGGTAGTGATAGCAAGATCAAC
GCGAGGCGAAGGTCGTCTGGACGGCGTTCGTCGTCCGACCCTCTCGTTAC
CCCACCCCCGCCGGAAGGAGCGCCGCCTCCTACGGCTACGAGAGGAAACA
TCAGTCCGGAATCAGCAACCACCTCCGCGTCTAGACGATCGTCTTCGTCG
TCGAAGCAGCCGTACAAATATGTTCCGAAACGTGACGGACCACTCCCAAC
CGACACCGTCGGCCGTCCGAGCACGAGCAGCAACAGCCAAGCGGCAGAGG
TTCCAGCGGCGTGGGGGAAAACCGAGCGAAATAGCCAAGATTTTCCCCAT
CAGGGGGCGGCCGACGACGCCGCGAGTCCGACGGGGGCGCGGACCCGGGG
GCCCGCATCTGCGCCCTGGACACCTCCCCCGCCCCGGGACCGAAAGAACA
GCTTGCTGTTGAAGCCGACGCCGCAGGCTATTGCTCGGGTCAAGGCGGCC
GTGGAGCGGCGGAAGAAGCTACAGGCTGCCGCCGCGTCCGCCGCTACAGC
TACCGACGCGAGAAATCCCGACGGCTTGCCGCCGGCGGCGGAGAGATAA
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