mRNA_Ecto-sp13_S_contig8200.19555.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8200.19555.1
Unique NamemRNA_Ecto-sp13_S_contig8200.19555.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8200.19555.1 vs. uniprot
Match: A0A6H5KQM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM7_9PHAE)

HSP 1 Score: 640 bits (1650), Expect = 9.580e-208
Identity = 349/428 (81.54%), Postives = 353/428 (82.48%), Query Frame = 1 
Query:    1 GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEEILEEEEGEVQGEDRAAAKEGXXXXXXXXXXXXXXXE---HEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR-------------------------------------------ETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRV----------------------SHKTCRFYFILERTTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK 1080
            GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSE+ILEEEE EVQGEDRAAAKEGXXXXXXXXXXX    E   HEAD+RSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTA+QAAKVGIVDSFDVDLNP QMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFR                                           ETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRV                      SHKTCRFYFILERTTTTLE+YLRRCLESDQGPYAGLPCETIT HDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK
Sbjct: 1000 GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEKILEEEEDEVQGEDRAAAKEGXXXXXXXXXXXEVLVEEEEHEADIRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTAAQAAKVGIVDSFDVDLNPVQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFRAGGSELPERARCSGRGAHTDTGDNLQTCSLVCLRLQQTRASLKETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRVGKSSFAGRSLLVGKRFLGKAEVSHKTCRFYFILERTTTTLEVYLRRCLESDQGPYAGLPCETITSHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK 1427
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8200.19555.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 4.400e-163
Identity = 271/360 (75.28%), Postives = 274/360 (76.11%), Query Frame = 1 
Query:    1 GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEEILEEEEGEVQGEDRAAAKEGXXXXXXXXXXXXXXXEHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFRETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRVSHKTCRFYFILERTTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK 1080
            GARTRGCYEDDPGPKRRMRVYCFR+ A E E                    E+L EEE                             EHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQM QTPLNDPAKSPFR +       VLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDE                        TTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK
Sbjct:  719 GARTRGCYEDDPGPKRRMRVYCFRTSAKEGEXXXXXXXXXX----------EVLVEEE-----------------------------EHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMMQTPLNDPAKSPFRVS-------VLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDE------------------------TTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRVK 1008
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8200.19555.1 vs. uniprot
Match: A0A2S1PRV6_FUCSE (Putative dicer (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRV6_FUCSE)

HSP 1 Score: 412 bits (1059), Expect = 1.380e-131
Identity = 215/363 (59.23%), Postives = 261/363 (71.90%), Query Frame = 1 
Query:    7 RTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGSEEILEEEEGEVQGEDRAAAKEGXXXXXXXXXXXXXXX-----EHEADMRSFHPKLKVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQMAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFRETGVEGDKGVLAVPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDK-TDEQYTRRILFSRVSHKTCRFYFILERTTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGRVKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMDPDAGVRSRV 1077
            R RGCYE  PGPKRRMRVYCFRSP  E   WVP+    R RR+      +      G+V+GED +   +G                    + EA+  +F+PKL VD+G+GPGKGLGPRL+VGLASAAPLPLTA+QA KVGI DSFDVDLNPAQ+A+IVQWH+ET+GM ALY+IPHQ+T+TP  DP K PFR+ G  GDKG++AVPV++ +    G G  +IDW AIEAANAG+  P   TDE+Y RRILF+R SHKTCRFYF+LERT+TTL+ YL+R LES+  P AG+P  TI+ H A + G  +G LAV  G+ + DY AA KSQRLLLGVP PAL+HSF QHL+RGE+VMDPDAGVR RV
Sbjct:  354 RPRGCYEGVPGPKRRMRVYCFRSPPRELNAWVPSSNEPRTRRATAG---DYKRSASGKVEGEDESGGAKGVEDDETLKEEPAEEDGGDGGDDEANFPTFNPKLGVDVGQGPGKGLGPRLYVGLASAAPLPLTATQADKVGIEDSFDVDLNPAQLASIVQWHRETLGMVALYKIPHQLTRTPQMDPEKCPFRDAGEVGDKGIVAVPVEFVETSAGGGGAPRIDWVAIEAANAGMMPPSSDTDEEYARRILFARTSHKTCRFYFVLERTSTTLDDYLQRRLESNMKPGAGVPYGTISHHPACKYGYARGSLAVVRGIHEHDYKAACKSQRLLLGVPVPALRHSFVQHLMRGERVMDPDAGVRRRV 713
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8200.19555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQM7_9PHAE9.580e-20881.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZW2_ECTSI4.400e-16375.28Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A2S1PRV6_FUCSE1.380e-13159.23Putative dicer (Fragment) n=1 Tax=Fucus serratus T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8200contigEcto-sp13_S_contig8200:121..4475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score506.5
Seed ortholog evalue1e-140
Seed eggNOG ortholog2880.D7FZW2
Model size1083
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
Cds size1080
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8200.19555.1prot_Ecto-sp13_S_contig8200.19555.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8200 123..4475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.674274-CDS-Ecto-sp13_S_contig8200:122..2841681464091.674274-CDS-Ecto-sp13_S_contig8200:122..284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8200 123..284 -
1681464091.6929595-CDS-Ecto-sp13_S_contig8200:889..9701681464091.6929595-CDS-Ecto-sp13_S_contig8200:889..970Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8200 890..970 -
1681464091.7043478-CDS-Ecto-sp13_S_contig8200:1482..15751681464091.7043478-CDS-Ecto-sp13_S_contig8200:1482..1575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8200 1483..1575 -
1681464091.7161124-CDS-Ecto-sp13_S_contig8200:2179..23591681464091.7161124-CDS-Ecto-sp13_S_contig8200:2179..2359Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8200 2180..2359 -
1681464091.726276-CDS-Ecto-sp13_S_contig8200:3097..32111681464091.726276-CDS-Ecto-sp13_S_contig8200:3097..3211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8200 3098..3211 -
1681464091.7374325-CDS-Ecto-sp13_S_contig8200:3599..37791681464091.7374325-CDS-Ecto-sp13_S_contig8200:3599..3779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8200 3600..3779 -
1681464091.7492337-CDS-Ecto-sp13_S_contig8200:4205..44751681464091.7492337-CDS-Ecto-sp13_S_contig8200:4205..4475Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8200 4206..4475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8200.19555.1

>prot_Ecto-sp13_S_contig8200.19555.1 ID=prot_Ecto-sp13_S_contig8200.19555.1|Name=mRNA_Ecto-sp13_S_contig8200.19555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
GARTRGCYEDDPGPKRRMRVYCFRSPAGEAEGWVPTLKRVRKRRSELDGS
EEILEEEEGEVQGEDRAAAKEGEEGEEEDEEVLVEEEEHEADMRSFHPKL
KVDLGRGPGKGLGPRLFVGLASAAPLPLTASQAAKVGIVDSFDVDLNPAQ
MAAIVQWHKETVGMAALYEIPHQMTQTPLNDPAKSPFRETGVEGDKGVLA
VPVDYGDDGPAGDGVVKIDWPAIEAANAGVHLPDKTDEQYTRRILFSRVS
HKTCRFYFILERTTTTLEIYLRRCLESDQGPYAGLPCETITPHDAGRMGR
VKGVLAVGHGVRKPDYDAADKSQRLLLGVPAPALKHSFAQHLVRGEKVMD
PDAGVRSRVK
back to top

mRNA from alignment at Ecto-sp13_S_contig8200:121..4475-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8200.19555.1 ID=mRNA_Ecto-sp13_S_contig8200.19555.1|Name=mRNA_Ecto-sp13_S_contig8200.19555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4355bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8200:121..4475- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGCGGACCCGGGGATGCTACGAGGACGACCCCGGACCGAAACGGCG
CATGAGGGTCTACTGCTTCCGCAGCCCGGCCGGAGAGGCTGAAGGCTGGG
TGCCGACGTTGAAGAGAGTTCGCAAGCGCAGGTCCGAGCTGGACGGGAGC
GAGGAAATTCTGGAGGAAGAGGAGGGCGAGGTTCAGGGCGAGGACAGGGC
GGCTGCGAAGGAGGGAGAGGAAGGAGAGGAGGAGGACGAGGAGGTCCTGG
TCGAGGAGGAAGAGCATGAAGTGAGCGTTCGCTCATCGAATGGGCTGTGC
GCCCCGTGTTTCTACTTGTCTTTTCGTGGTTGTGGAGGAGTGCAATAGCA
CGTTTAATGTATATTAATTGTATTCTACGGCAGGACCCATGGGTTTTTCC
TTTTTTTAACGAATCTGTGTCAGCCTGAATTGGGCTACTGCTGCAGGTGA
GCGTGCCTTGCTAGGATGTAGCAACCACGAGGGACGTTTGGAATGTCTTC
GTTGAGGGAAGCCGTCCTCTCTCTGCCTTCCCCCCCCCCCTCTCTCTTTC
TCCTAAGCCGTGTAATGAAACCTATGAAATGCTAGTGGGATGAGCCGTTT
TTTCGTGCCCTTCAATCGGTACCCTCTTGACGAGCACCTCTTCAACTGTA
GCCGCTACTGCAACTTCCTCTCGCTGTCATCTGCCTTTCGCCTCAGGCGG
ACATGCGATCATTCCACCCCAAGCTGAAGGTGGACCTGGGGCGGGGGCCC
GGGAAGGGTCTAGGCCCCCGCCTGTTCGTGGGGTTGGCCAGCGCGGCTCC
CCTCCCTTTGACGGCCTCCCAGGCCGCCAAGGTCGGGATAGTGGACAGCT
TCGACGTGGACCTCAATCCTGCGCAGGTGTGTAGATCGTTTCACGTTTGT
TGTTGTCCTGTGTGTTGATCGACGGAGATCTTGGTGTGTGCTGGCTTTTA
GTTTAGGCGGAAGAAGCCGGAAGAAGCAGTGGGGGGGCACTGTAGGGGAA
GAGTAGACGGAGGAGGGGGGGTAGATCGAATGCCCGTGAGCCTGTCGTAT
AATAGGTGCTGTCATCTTTAGCGATGATGTGCTGTATGTCGTTCTTTTAT
TCGCGATGCTGGCATGCTCCTATGCCATCATTCTTTCTCGGACGTCCTCC
TGCATGGTTACAAGGGGAGCAATCCATGGTACCGGCCTTACTCAATGAAC
GGATGCAACCGGGCGATCGTCATCACCAACAATTCTTGGACCCGTGTTTG
CACGCCGCCTGCAGATGGCAGCCATAGTACAGTGGCACAAGGAGACGGTG
GGCATGGCGGCCCTTTACGAGATTCCCCACCAGATGACGCAGACGCCTCT
GAACGACCCGGCCAAGTCTCCCTTCCGGGTGAGTGACGTTTTTTTTTTCA
CAATTCTCGTTTTTATTTTTCTCGCGTTTCTCGACTTTTGTTTTAGCTTT
TCTCGTTTCTTTTAATTTTTACATTTTTCGAGGTAAATCTGAAGGCATGT
ACCCTGATAGGAGGAAAGATGGAGAAACGCCTGGAACAACCCCTTTGTTG
GCCTTCCCCCTGTGAGCCCAGGCGCCGCGTCAAACATGTGCCGAAAGGGG
TAGATCGGCGCCAGAATAGATGAGGACAAAAAGCTGACCCACGCAAGCTA
TGCTCTCCGGCGTACCCTTACTATAACGTTCTTGAGAAGAACGTTTCCGT
AGGGGTACGCCGGAGAGCATTACTTGCTGCGTGGGTAAGTTTCGTGTTCC
CGTCTATTCTGGCGCCAGTCTACACCCCTCGGCACGTCTTGTTCGACGGG
TTTCAAGTGTTTCCTCTGCGCCCAATTCTGCCAAAGCAAACTGGTCAACA
GGCATTATTTAGTGAGTGCCCCCCACTGCATTTGTTCTGTTCGGTGTGTA
CGATGAGCTTTGCCCAGAGGTCGTGTGAGGAAGCCAGAGAAGCTGAGCGT
TTTTTCTAGTTCGGCAGGTGTTGGTTGTTCTTGGGTAGGCGGAGGCAGCG
ACTTGCCCGAGCGTGCGCGCTGCTCTGGACGTGGGGCACACACCGGAACG
GGCGGTAATCTGCAAACGTGCTCTTTGGGTTGTCGACACCTTCATCAAAC
CCGTGCGTCGTTGCAGGAGACCGGAGTTGAAGGGGACAAAGGCGTGCTTG
CCGTCCCTGTGGACTACGGTGACGATGGACCGGCGGGAGACGGGGTGGTA
AAGATTGACTGGCCGGCGATCGAAGCGGCCAACGCTGGAGTGCACCTGCC
GGACAAGACGGACGAGCAGTACACTAGGCGGATTCTATTCTCGAGGGTAG
GGAAGAGTTTTTTGGTAGGGAAGAGATTTTTGGTAGTGAAGAGGTAGTTG
GTAGTGAAAAGGTTCTCGGTAGGGAACAGGTATGTGGCAGGGAAGAGGTT
TTCGGTAGGGAAGAGGTATTTGTAGGTAAATTTTGTTTATTGGTAGGGAA
ATGGTTTTTGGTATGGAAGAGGTATTCGGCAGCGAAGAGTTTTTTGGTGA
GGAAGACGTTTTTGGTAGGGAAGAGGTTATTCTTGGTGAACGCTGACAGG
AGCTTGACAAGCATGGTTACTTCATGTGAATGTTGAGAAGCGTGTTGATG
ACTTCTGGGAGAGGTCTCCACACGTGCTTCGGAGGCTCTCAGCAGAGGTT
CTTGGAAAGAGTACTGGAGTTTTATTGAAGGTGTTGATGCGTCAAGCTCC
CGTCTGGCTTAATTTTGCGTTGCTCCGACCCGCAGAAACAGTTTCAATCG
CCTTCCTCAGAAGCATACAACAATCATTAGGCTTTCCTCTCTTAAGCACG
ACAACCCTGAGTTCTTTTCTCTCAATCCCTGCAAGGCTTGGTGTGTATCA
TGTGCGAATATTTTTTTCGCGCTCCAAACCCAATCCGGCATTTCTTGCAG
GTGAGCCACAAGACCTGCCGTTTCTACTTCATCCTGGAGAGGACCACCAC
GACTCTTGAGATCTACCTCCGGCGGTGCCTTGAGTCCGACCAAGTATGTC
GCTGCGAACGTTGAAGAGATGCGCTTTGTCCGCTGCGCTACAAAACGAAG
CCAACCCTTGCGTCTGACACAGGCGCGCGATCGGCACCATTTGCTGAGTT
TTGAAACTGGTCGATGCCGCTTTTCCGAACGCCTTGTGGTTTGTTAGACC
ATTGGGTCACGATTAGGAGGGTCCCACCATAATCTTAGCCGTGCCAGGGG
GAGGGCGATCGCTGCTTGAGTCCGACTTGGGCGGGTAAGGTCGGGCGATA
TTTCGATTCAGCAACCAAACTCCTTGGTCGCGCCGTGGTCGTTGCTCCGT
GGGACAAATTTTGAGAGTCGTTGTCTGCGGTTGTCTGGGGCTAGCTTTAG
CGTTAGGGCTAGAGGGCTTCCCCCGACTGGACGGATATCTCGAAGCGACG
TATCTCCCTAGTGTTACTACTATTCCGTCAAGAATAATTACATTCTACCC
TCCTCACCCTATCCCCACACCACTCGCCGTGCTTTTTATTGTTGCTGCCT
CACAGGGACCTTACGCTGGACTCCCGTGCGAGACGATCACGCCGCACGAT
GCCGGCCGAATGGGCCGCGTGAAGGGGGTGTTAGCGGTGAGAATCAGGTT
GCGGGGCCCCTCTGTGCATATTTTGATGGACTCCTCCACTACGGACGTAT
GCCTTCGGGGGGTATCGTCAAGTTCCGCTATATTTCTTTCAGAACCAATA
TCGCTGTTGTTTCTACTACCCGCGTTGACTGCTTAGGCGGTGTTTAAGGG
ACCATAGCGGTGATGCGTATACAGGCAATGATCCACTAGCGATACAGTAC
GAACCATCACGTAAGGGCCTGGGAGTGAAGAAGTTTGGGGCCCACGAAAA
GAGAAACGTAAACAGTTGACGATAAGAACAGGTGCTCGTTACCTACGCTA
AGCCCTTACAGTCGATTTTGGGATGCTCCACAGGGGAGATGCAAGGAGTT
ATTGAACGGTGGCGCATCATGCATCGCCATCAAGACTTGCTTTTGCTTTT
TGAAGATTATCGCACTCGTCGCCTGGGCTCCCCGCAGTGACTGTTGGTAG
TGAATGATACGCATATTAACAGCGTGTCTTAGAACAAGGACATCGTGTGT
GGGGAGGGAACCCAAGAGGTCGAACTTACCTTACCGTCCTAGGTGGCACA
CCTAACGCCGGCTGCGTGTGTGCACCCCCCCTCCTGCGCAGGTGGGCCAC
GGCGTGCGGAAGCCGGACTACGACGCCGCCGACAAGTCTCAGCGCCTGCT
GCTGGGCGTGCCGGCGCCGGCCCTGAAGCACTCGTTCGCGCAACACCTGG
TTAGAGGGGAGAAAGTCATGGACCCTGATGCGGGCGTCCGAAGCAGGGTG
AAGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8200:121..4475-

>mRNA_Ecto-sp13_S_contig8200.19555.1 ID=mRNA_Ecto-sp13_S_contig8200.19555.1|Name=mRNA_Ecto-sp13_S_contig8200.19555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8200:121..4475- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGCGGACCCGGGGATGCTACGAGGACGACCCCGGACCGAAACGGCG
CATGAGGGTCTACTGCTTCCGCAGCCCGGCCGGAGAGGCTGAAGGCTGGG
TGCCGACGTTGAAGAGAGTTCGCAAGCGCAGGTCCGAGCTGGACGGGAGC
GAGGAAATTCTGGAGGAAGAGGAGGGCGAGGTTCAGGGCGAGGACAGGGC
GGCTGCGAAGGAGGGAGAGGAAGGAGAGGAGGAGGACGAGGAGGTCCTGG
TCGAGGAGGAAGAGCATGAAGCGGACATGCGATCATTCCACCCCAAGCTG
AAGGTGGACCTGGGGCGGGGGCCCGGGAAGGGTCTAGGCCCCCGCCTGTT
CGTGGGGTTGGCCAGCGCGGCTCCCCTCCCTTTGACGGCCTCCCAGGCCG
CCAAGGTCGGGATAGTGGACAGCTTCGACGTGGACCTCAATCCTGCGCAG
ATGGCAGCCATAGTACAGTGGCACAAGGAGACGGTGGGCATGGCGGCCCT
TTACGAGATTCCCCACCAGATGACGCAGACGCCTCTGAACGACCCGGCCA
AGTCTCCCTTCCGGGAGACCGGAGTTGAAGGGGACAAAGGCGTGCTTGCC
GTCCCTGTGGACTACGGTGACGATGGACCGGCGGGAGACGGGGTGGTAAA
GATTGACTGGCCGGCGATCGAAGCGGCCAACGCTGGAGTGCACCTGCCGG
ACAAGACGGACGAGCAGTACACTAGGCGGATTCTATTCTCGAGGGTGAGC
CACAAGACCTGCCGTTTCTACTTCATCCTGGAGAGGACCACCACGACTCT
TGAGATCTACCTCCGGCGGTGCCTTGAGTCCGACCAAGGACCTTACGCTG
GACTCCCGTGCGAGACGATCACGCCGCACGATGCCGGCCGAATGGGCCGC
GTGAAGGGGGTGTTAGCGGTGGGCCACGGCGTGCGGAAGCCGGACTACGA
CGCCGCCGACAAGTCTCAGCGCCTGCTGCTGGGCGTGCCGGCGCCGGCCC
TGAAGCACTCGTTCGCGCAACACCTGGTTAGAGGGGAGAAAGTCATGGAC
CCTGATGCGGGCGTCCGAAGCAGGGTGAAG
back to top