mRNA_Ecto-sp13_S_contig82.19554.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82.19554.1
Unique NamemRNA_Ecto-sp13_S_contig82.19554.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82.19554.1 vs. uniprot
Match: A0A6H5L2K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K9_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.640e-40
Identity = 66/89 (74.16%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 MSRLEELGIAKNVTCMITDTVANMKNGVVVHMPGMEWLGCACHKAERSVQKFVGTPGLKQSLSTFSKVATHLHKSALSKDVFEDAQRVS 267
            M  L+ELGIAK VTCM TDT A MKNG+V HMPGMEWLG ACHKAER+VQ FVG PGLK+S+S F+KVATHL KSAL K VF+DAQ++S
Sbjct:    1 MGMLKELGIAKTVTCMTTDTAAKMKNGIVEHMPGMEWLGRACHKAERTVQNFVGPPGLKKSISAFTKVATHLQKSALWKGVFQDAQQLS 89
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BLAST of mRNA_Ecto-sp13_S_contig82.19554.1 vs. uniprot
Match: D7G6P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.690e-30
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:   10 LEELGIAKNVTCMITDTVANMKNGVVVHM-PGMEWLGCACHKAERSVQKFVGTPGLKQSLSTFSKVATHLHKSALSKDVFEDAQR 261
            L+ LGI   V  M TDT ANMKNGV+VHM P ++WLGC CHK E +VQKFV TPGLK++L  F+KVA HLHKSALS   F +AQ+
Sbjct:    2 LKALGIENQVISMTTDTAANMKNGVIVHMAPQIQWLGCGCHKTELTVQKFVNTPGLKETLKRFTKVAGHLHKSALSLGAFFEAQK 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82.19554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2K9_9PHAE1.640e-4074.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P8_ECTSI7.690e-3063.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82contigEcto-sp13_S_contig82:29559..29828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size270
Hectar predicted targeting categoryother localisation
Exons1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.6321383-CDS-Ecto-sp13_S_contig82:29558..298281681464091.6321383-CDS-Ecto-sp13_S_contig82:29558..29828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 29559..29828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82.19554.1prot_Ecto-sp13_S_contig82.19554.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82 29559..29828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82.19554.1

>prot_Ecto-sp13_S_contig82.19554.1 ID=prot_Ecto-sp13_S_contig82.19554.1|Name=mRNA_Ecto-sp13_S_contig82.19554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MSRLEELGIAKNVTCMITDTVANMKNGVVVHMPGMEWLGCACHKAERSVQ
KFVGTPGLKQSLSTFSKVATHLHKSALSKDVFEDAQRVS*
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mRNA from alignment at Ecto-sp13_S_contig82:29559..29828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82.19554.1 ID=mRNA_Ecto-sp13_S_contig82.19554.1|Name=mRNA_Ecto-sp13_S_contig82.19554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82:29559..29828+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGGCTGGAAGAGCTTGGAATCGCCAAGAACGTGACCTGCATGAT
TACGGACACGGTTGCGAACATGAAGAACGGGGTCGTAGTGCACATGCCTG
GTATGGAGTGGCTCGGGTGTGCATGCCACAAGGCTGAGCGAAGTGTGCAG
AAGTTCGTCGGCACCCCCGGCCTGAAGCAGTCCCTCAGCACCTTCTCCAA
GGTTGCGACGCACCTGCACAAGTCCGCGCTGTCGAAGGATGTGTTCGAAG
ACGCGCAACGAGTGAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82:29559..29828+

>mRNA_Ecto-sp13_S_contig82.19554.1 ID=mRNA_Ecto-sp13_S_contig82.19554.1|Name=mRNA_Ecto-sp13_S_contig82.19554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82:29559..29828+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAGGCTGGAAGAGCTTGGAATCGCCAAGAACGTGACCTGCATGAT
TACGGACACGGTTGCGAACATGAAGAACGGGGTCGTAGTGCACATGCCTG
GTATGGAGTGGCTCGGGTGTGCATGCCACAAGGCTGAGCGAAGTGTGCAG
AAGTTCGTCGGCACCCCCGGCCTGAAGCAGTCCCTCAGCACCTTCTCCAA
GGTTGCGACGCACCTGCACAAGTCCGCGCTGTCGAAGGATGTGTTCGAAG
ACGCGCAACGAGTGAGTTGA
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