mRNA_Ecto-sp13_S_contig82.19553.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82.19553.1
Unique NamemRNA_Ecto-sp13_S_contig82.19553.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82.19553.1 vs. uniprot
Match: D7FRR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR7_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 7.830e-91
Identity = 174/308 (56.49%), Postives = 188/308 (61.04%), Query Frame = 1 
Query:   82 PSNPAPYPSPPREVVNSRDGEADQAPGGGFREPSTISSSGSDKEDIDRDSDAARGSPLRGDAKWHPWRRVNTTRNKSSGASGDGDGKTGSRVSPSRGTVRHRPGYHDNRCPPPRRAKLDGENDPKCHISGDGQEEDDVGDALFTSSVCNQGGGEAFPEADGVADFDDAPSEMDCGGYSFDGGFDGIATPPAEDGAQEREDNVQDMRGGYVSPIADLGGGVEEAKGEGSAVDSGKFGGTREGTVDESLWCRQDGCPYSVDGLGGDGSSGDSMIAGAGASAAGVHRLKRGRTHKQGPFQDTQTDGSATLQ 1005
            PS PA  PSPP +V N+ D EAD+APGGGFREPST S SGSD+EDID DSDAAR SPLRGDAKW PWRRV+  RNK                                                    SG+GQE+DDVGDALF+SSVCNQGGG AFPEADGVADFDDAPSEMDCG YSFDGGFDG+AT                                                   EGTVDE LWCRQ+GCPYSVDGLGGDGSSGDS+IAGAGA+AAGVHRLKRGRT++QGPFQDTQTDGSATLQ
Sbjct:   29 PSIPALDPSPPPDV-NTGDDEADEAPGGGFREPSTSSFSGSDEEDIDGDSDAARESPLRGDAKWRPWRRVDMARNK---------------------------------------------------YSGNGQEDDDVGDALFSSSVCNQGGGAAFPEADGVADFDDAPSEMDCGDYSFDGGFDGVATRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGTVDERLWCRQNGCPYSVDGLGGDGSSGDSVIAGAGANAAGVHRLKRGRTYEQGPFQDTQTDGSATLQ 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82.19553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRR7_ECTSI7.830e-9156.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82contigEcto-sp13_S_contig82:22282..25804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2078
Hectar predicted targeting categoryother localisation
Exons2
Cds size1920
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.5659413-CDS-Ecto-sp13_S_contig82:22281..223921681464091.5659413-CDS-Ecto-sp13_S_contig82:22281..22392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 22282..22392 +
1681464091.5758083-CDS-Ecto-sp13_S_contig82:23837..256461681464091.5758083-CDS-Ecto-sp13_S_contig82:23837..25646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82 23838..25646 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.5853937-UTR-Ecto-sp13_S_contig82:25646..258041681464091.5853937-UTR-Ecto-sp13_S_contig82:25646..25804Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig82 25647..25804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82.19553.1prot_Ecto-sp13_S_contig82.19553.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82 22282..25646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82.19553.1

>prot_Ecto-sp13_S_contig82.19553.1 ID=prot_Ecto-sp13_S_contig82.19553.1|Name=mRNA_Ecto-sp13_S_contig82.19553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=640bp
MEDEEDEEEEEEEEEEEDDGEKEKQQDPSNPAPYPSPPREVVNSRDGEAD
QAPGGGFREPSTISSSGSDKEDIDRDSDAARGSPLRGDAKWHPWRRVNTT
RNKSSGASGDGDGKTGSRVSPSRGTVRHRPGYHDNRCPPPRRAKLDGEND
PKCHISGDGQEEDDVGDALFTSSVCNQGGGEAFPEADGVADFDDAPSEMD
CGGYSFDGGFDGIATPPAEDGAQEREDNVQDMRGGYVSPIADLGGGVEEA
KGEGSAVDSGKFGGTREGTVDESLWCRQDGCPYSVDGLGGDGSSGDSMIA
GAGASAAGVHRLKRGRTHKQGPFQDTQTDGSATLQAGCKEMDFGWSRFHD
GGGDVDTSPDGEGPADPQDSGRGTSVRRLRREMSHGGGAYDPGPVGDAEY
PCEGGVDGSDSGSGGSCYRVNGSDSGGYGIGTGRIETMSPGDRGVEGGGF
LREYRSRGRGEDTQSVATPRMACEVLLVGGGDGLKISGNMGRGSETEGRA
SVSSGSSASDGIASGRPRFGLARSEAKGSESAAGSSFVGFPRVSLEPQSM
MRLHGGGVDVTAANVRSPSKADAIRKMGSTVAVRRRNEFGRRTGLTWSVL
PGGMGGTRSGGKLCPTPDAVFDAIWEKYGRAWESFVLQK*
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mRNA from alignment at Ecto-sp13_S_contig82:22282..25804+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82.19553.1 ID=mRNA_Ecto-sp13_S_contig82.19553.1|Name=mRNA_Ecto-sp13_S_contig82.19553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3523bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82:22282..25804+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGATGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGACGATGGCGAAAAAGAAAAACAACAAGATCCTTCTAATCCTGCCCCGT
ACCCGTCGCCGGTGAGTCAGTTAAGCATCAGCGGCCAAGAGAGTGAACGC
TTAGAGGAATTTGTGCGAAGTACCCAGGTCTGTAAAACCTAGACCTGTAC
TACATAAGGCGGGGTAATGAGCCTCGTGGTAGCCGACTCAACGCCTTCCA
GTACTCTTATGTATCTGCGATACATTTTGCAGGTGGCAGGTGCAGTCGAT
CGTCTTGAATTTTGAATTCGAGGCATCAGCGAAAATGTTCTAAAAAAAAA
GACTCCCGCAGTACGAACGGCCGTTGAGATTCGTGTGCATACAGCAGTAC
TGCTGTGGGTGACACAAAATACGACACCCTGGACCAATTTTCAAATCTTC
GTTGCTCCACACCACAGCAAGTCGCGGTGCCGAAAATGTTGGTGTGGAAA
CCGTCTCCTTCTCGCCGAGAGCTTTCCGACATCTCGCTGGGTGTAAACAT
CCTGTTCGTCGTGGAGATTTTGGCTTCAGAATCGGTACAGGGTGTGTGGT
ACGTTATATTACCTACGGCAAACCTATGTGCATACGCCATACATTTCCAT
ACGTTCCCCCATCCATTTAGGTTTTCTGTAAGGCTTTTCCCCGCGAGCTG
TGTGTATGAAACGTCTTGGGTGGTGATCAAGACCGACCGGGAGGCTGTAG
GACGCTCAGAAATTCCGAGCGCGAGAGTTTGGCACAGCCTGAAAAAGATA
CACGGCGTCTGCCGGGATGAGTTCCTTTGTATTTTTGTTGCCCCAGGCGC
AGGTTTGGTTCACCGATGATCCCTTCCCACACACCGGAGCAACATCCATG
ACAATGACACCCGCCAGAGCTGTATGCATGTTTCCCTTCCCTCGCCAGTG
CTGTCTTGCCCCTCCCAGCGGTGTTGTGTGTTTAGCTGAGTGCTTGCTCT
GTTTCTCCTGGTTTGAACCAAGCAACTACGTATGTAGGGGTGGAAGATCT
CCGATTTTTGTTGCTCCAATACCTCTTAACCACTCCCCGCGGGAGAAGGG
GTACAAATATCCAGTGATTTTCGGTACAAATTCCTGTGAAGCACAGCCAT
CTGTCGTCGGAGTGCGACGAAACCGGTGTGACGAAGAGTCCCTAATTGCT
TCCTCCTTACAAGTCAGCAGAACGTCAATCGGTGCTCTACTTATAGACCT
CGTTCTTGGTCGAACAAAGGCGATTATTTTCGAACGGTCCATAATGAGGT
CCAAATTGCAACACGGCTCCTACATCGCGCTGGTTGGAAGAGCCTGCTAC
ATATCTATTTTTTTAATTCCTCCTGGGGATGAGGGCAAGAGTGTTGGTAG
CGACAAGACAGCCTGCGCGCGCGTCGGCCTCCTCGAATAATCGAACCGCG
ACGCCAAGCGAGGCAAGACTCCGCCAGTTGGGCGGTCGTCACAACAGAAT
CTCAGGAGGAAACCCAAGAGCGAATGGCCACTAACGACCCTTTTTCCAAT
GCCCAGCCGCGAGAGGTCGTCAACTCTAGAGATGGCGAGGCAGACCAAGC
GCCGGGAGGTGGCTTTAGGGAGCCATCTACTATTTCTTCCTCCGGGTCTG
ACAAAGAGGACATCGACAGAGATAGCGACGCGGCCAGAGGGTCTCCGCTA
CGAGGGGATGCCAAGTGGCACCCTTGGAGGAGGGTCAATACGACTAGGAA
CAAATCTTCAGGTGCTTCAGGCGACGGTGACGGCAAAACCGGTAGTAGAG
TGAGCCCCAGCAGAGGCACTGTAAGGCATCGACCGGGATATCATGACAAC
AGATGTCCTCCGCCACGGCGCGCAAAACTAGACGGAGAGAATGACCCGAA
ATGTCATATCTCAGGCGACGGTCAAGAAGAAGATGACGTCGGCGACGCGT
TGTTCACTTCGTCCGTGTGCAATCAGGGGGGTGGCGAGGCTTTCCCCGAG
GCAGATGGCGTGGCTGACTTTGACGACGCTCCTAGTGAGATGGACTGTGG
GGGCTACAGTTTTGACGGTGGTTTTGATGGTATTGCGACACCCCCCGCGG
AAGACGGCGCACAAGAACGTGAGGACAACGTACAGGATATGAGGGGCGGG
TACGTTAGCCCCATCGCAGACCTTGGCGGTGGTGTGGAGGAAGCGAAAGG
AGAAGGGAGTGCAGTGGATTCGGGAAAATTTGGTGGCACTCGCGAGGGTA
CCGTAGACGAGAGCCTGTGGTGTCGACAGGATGGATGTCCCTATTCTGTC
GATGGACTTGGTGGCGATGGTAGTAGCGGTGACTCAATGATTGCTGGTGC
AGGCGCGAGCGCCGCCGGCGTTCACCGGTTGAAGAGAGGAAGGACACATA
AGCAGGGACCATTTCAGGATACCCAGACGGACGGCAGCGCGACATTGCAG
GCTGGCTGCAAGGAGATGGATTTCGGGTGGTCTCGTTTTCACGATGGCGG
TGGCGATGTTGACACGTCCCCCGACGGAGAAGGCCCGGCAGATCCTCAGG
ACTCTGGACGGGGCACGAGTGTCCGGCGGTTACGCCGTGAGATGTCTCAT
GGCGGTGGTGCATACGACCCCGGACCGGTGGGAGATGCTGAGTATCCGTG
CGAGGGTGGTGTTGATGGCAGTGATAGTGGTAGCGGAGGTAGTTGTTATC
GTGTAAACGGGAGCGACTCTGGTGGATACGGCATAGGGACAGGCAGGATA
GAAACCATGTCCCCTGGCGACCGGGGGGTGGAGGGTGGAGGTTTTCTGAG
GGAGTATAGATCGCGGGGGCGAGGTGAGGACACCCAGAGCGTAGCTACGC
CAAGGATGGCTTGTGAGGTACTGCTGGTCGGCGGTGGGGATGGCCTCAAA
ATTAGTGGCAATATGGGCCGAGGCAGTGAGACCGAAGGTAGAGCTAGTGT
GAGCAGCGGAAGCAGTGCGAGTGATGGTATAGCTAGTGGCCGGCCTCGAT
TTGGTCTCGCAAGGTCGGAGGCAAAGGGGTCAGAGTCAGCCGCTGGAAGC
AGCTTTGTAGGTTTTCCCAGGGTTAGTTTGGAACCCCAAAGCATGATGAG
GCTGCATGGAGGGGGCGTGGATGTCACCGCGGCGAACGTAAGGTCTCCGT
CCAAAGCAGACGCCATCCGCAAGATGGGCAGTACAGTAGCCGTACGACGG
AGGAACGAATTTGGGCGTCGCACGGGGCTGACGTGGTCGGTTCTGCCTGG
TGGAATGGGGGGGACACGATCAGGAGGCAAGCTCTGTCCTACGCCTGATG
CCGTATTTGACGCGATATGGGAAAAGTATGGACGTGCGTGGGAAAGCTTC
GTATTGCAAAAGTAGTGTACGAGCGTACTTCGCTCTCTGTTCGCGAACGC
TGGGCGAGTCATGGAGGCCTGAGCTTTTTTCCTTGGTCTTCTCTCCCTCA
TCTTGTTATCTCTCGACCTGGAGTAGGGAAATCACGCCTTGGCCTGGCTT
GATTAAAGCCCAGCGAACACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82:22282..25804+

>mRNA_Ecto-sp13_S_contig82.19553.1 ID=mRNA_Ecto-sp13_S_contig82.19553.1|Name=mRNA_Ecto-sp13_S_contig82.19553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1920bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82:22282..25804+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGATGAGGAGGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGACGATGGCGAAAAAGAAAAACAACAAGATCCTTCTAATCCTGCCCCGT
ACCCGTCGCCGCCGCGAGAGGTCGTCAACTCTAGAGATGGCGAGGCAGAC
CAAGCGCCGGGAGGTGGCTTTAGGGAGCCATCTACTATTTCTTCCTCCGG
GTCTGACAAAGAGGACATCGACAGAGATAGCGACGCGGCCAGAGGGTCTC
CGCTACGAGGGGATGCCAAGTGGCACCCTTGGAGGAGGGTCAATACGACT
AGGAACAAATCTTCAGGTGCTTCAGGCGACGGTGACGGCAAAACCGGTAG
TAGAGTGAGCCCCAGCAGAGGCACTGTAAGGCATCGACCGGGATATCATG
ACAACAGATGTCCTCCGCCACGGCGCGCAAAACTAGACGGAGAGAATGAC
CCGAAATGTCATATCTCAGGCGACGGTCAAGAAGAAGATGACGTCGGCGA
CGCGTTGTTCACTTCGTCCGTGTGCAATCAGGGGGGTGGCGAGGCTTTCC
CCGAGGCAGATGGCGTGGCTGACTTTGACGACGCTCCTAGTGAGATGGAC
TGTGGGGGCTACAGTTTTGACGGTGGTTTTGATGGTATTGCGACACCCCC
CGCGGAAGACGGCGCACAAGAACGTGAGGACAACGTACAGGATATGAGGG
GCGGGTACGTTAGCCCCATCGCAGACCTTGGCGGTGGTGTGGAGGAAGCG
AAAGGAGAAGGGAGTGCAGTGGATTCGGGAAAATTTGGTGGCACTCGCGA
GGGTACCGTAGACGAGAGCCTGTGGTGTCGACAGGATGGATGTCCCTATT
CTGTCGATGGACTTGGTGGCGATGGTAGTAGCGGTGACTCAATGATTGCT
GGTGCAGGCGCGAGCGCCGCCGGCGTTCACCGGTTGAAGAGAGGAAGGAC
ACATAAGCAGGGACCATTTCAGGATACCCAGACGGACGGCAGCGCGACAT
TGCAGGCTGGCTGCAAGGAGATGGATTTCGGGTGGTCTCGTTTTCACGAT
GGCGGTGGCGATGTTGACACGTCCCCCGACGGAGAAGGCCCGGCAGATCC
TCAGGACTCTGGACGGGGCACGAGTGTCCGGCGGTTACGCCGTGAGATGT
CTCATGGCGGTGGTGCATACGACCCCGGACCGGTGGGAGATGCTGAGTAT
CCGTGCGAGGGTGGTGTTGATGGCAGTGATAGTGGTAGCGGAGGTAGTTG
TTATCGTGTAAACGGGAGCGACTCTGGTGGATACGGCATAGGGACAGGCA
GGATAGAAACCATGTCCCCTGGCGACCGGGGGGTGGAGGGTGGAGGTTTT
CTGAGGGAGTATAGATCGCGGGGGCGAGGTGAGGACACCCAGAGCGTAGC
TACGCCAAGGATGGCTTGTGAGGTACTGCTGGTCGGCGGTGGGGATGGCC
TCAAAATTAGTGGCAATATGGGCCGAGGCAGTGAGACCGAAGGTAGAGCT
AGTGTGAGCAGCGGAAGCAGTGCGAGTGATGGTATAGCTAGTGGCCGGCC
TCGATTTGGTCTCGCAAGGTCGGAGGCAAAGGGGTCAGAGTCAGCCGCTG
GAAGCAGCTTTGTAGGTTTTCCCAGGGTTAGTTTGGAACCCCAAAGCATG
ATGAGGCTGCATGGAGGGGGCGTGGATGTCACCGCGGCGAACGTAAGGTC
TCCGTCCAAAGCAGACGCCATCCGCAAGATGGGCAGTACAGTAGCCGTAC
GACGGAGGAACGAATTTGGGCGTCGCACGGGGCTGACGTGGTCGGTTCTG
CCTGGTGGAATGGGGGGGACACGATCAGGAGGCAAGCTCTGTCCTACGCC
TGATGCCGTATTTGACGCGATATGGGAAAAGTATGGACGTGCGTGGGAAA
GCTTCGTATTGCAAAAGTAG
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