mRNA_Ecto-sp13_S_contig12341.1955.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12341.1955.1
Unique NamemRNA_Ecto-sp13_S_contig12341.1955.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12341.1955.1 vs. uniprot
Match: D7FH33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH33_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 1.840e-117
Identity = 168/172 (97.67%), Postives = 170/172 (98.84%), Query Frame = 1 
Query:    1 MHSVWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNNQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEETMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAI 516
            MHS+WTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLN QVEIDYGGYAWTQWMHRHFGDTALHIALKWKR+RAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEE MRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAI
Sbjct:    1 MHSLWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNTQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRYRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEEAMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAI 172
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BLAST of mRNA_Ecto-sp13_S_contig12341.1955.1 vs. uniprot
Match: A0A835Z280_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z280_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.170e-35
Identity = 75/173 (43.35%), Postives = 105/173 (60.69%), Query Frame = 1 
Query:    4 HSVWTRKTR-TWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNNQVEID-YGGYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEETMRNLMAAEQAARDKARLDFLEAQHAARTIGIDHEAAI 516
            H+  TR+ R  WG++ IR ID+DDP  V+RA++ P    F D+++ V+   YG YA+TQ M  H GDTALH+ALKW++ RA KA+L L   W I N  GVTAE ++++ + K M   K +QEREY   AM  E++ M  L+A EQ+ +     D L   +  RT G   EA +
Sbjct:    3 HNATTRRLRGCWGFDAIRAIDQDDPALVLRAYKLP----FADVDHVVQKHLYGDYAFTQRMDLHEGDTALHLALKWRKMRAAKALLHLNARWDIVNAQGVTAEAILMKEHLKPMLTLKAQQEREYATQAMACEDDLMHTLLAHEQSMQQAMSADKLRQLNELRTAGAAQEAML 171
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BLAST of mRNA_Ecto-sp13_S_contig12341.1955.1 vs. uniprot
Match: A0A7S3Y2N4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N4_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 8.760e-22
Identity = 60/145 (41.38%), Postives = 79/145 (54.48%), Query Frame = 1 
Query:   25 TRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNNQVEIDYGGYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSLRPNWTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEETMRNLMAAEQAARDKARLD 459
            T +WGYEVIRGIDEDD  RV  A R   G     +N QV  +YGGY WT  +H ++GDTA+H+A+K+ R R  + +L L P+ T+ N  G TA +L    Y K +         E   D M AEE   R  +      R++A LD
Sbjct:   10 TSSWGYEVIRGIDEDDHERVTEALRSWRGKK---INIQVGEEYGGYRWTARLHEYYGDTAVHLAIKFSRPRIFRKLLLLAPDLTLYNGQGQTAAELAESTYKKPIKALVRAAWEEETRDRMAAEEAYERRRL------REQAELD 145
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BLAST of mRNA_Ecto-sp13_S_contig12341.1955.1 vs. uniprot
Match: A0A7S2C3Y6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3Y6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.990e-9
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:  157 GYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSL---RPN-----------WTIPNEAGVTAEQLVLRLYGKSMARFKDEQEREYENDAMRAEEETMRNLMAAEQAARDKA 450
            GYAW+ W HR  GDT LH+A++WKR++A+K +  L   RP+           + + +  G TAE LV   +G+++A    +QE+    D + A EE  R      +AAR  A
Sbjct:    1 GYAWSAWSHRMAGDTVLHLAMRWKRYKALKGLYRLPAQRPDGMVGAGQPFFDYDVRDVDGQTAESLVTAEFGRTIANLWTKQEK----DDIEAAEEAARQAALEAEAARSLA 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12341.1955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH33_ECTSI1.840e-11797.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z280_9STRA8.170e-3543.35Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3Y2N4_HETAK8.760e-2241.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2C3Y6_9STRA3.990e-935.71Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12341contigEcto-sp13_S_contig12341:3..1276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size516
Hectar predicted targeting categoryother localisation
Exons3
Cds size516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.994101-CDS-Ecto-sp13_S_contig12341:2..1051681462656.994101-CDS-Ecto-sp13_S_contig12341:2..105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12341 3..105 -
1681462657.0050302-CDS-Ecto-sp13_S_contig12341:455..7301681462657.0050302-CDS-Ecto-sp13_S_contig12341:455..730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12341 456..730 -
1681462657.0207994-CDS-Ecto-sp13_S_contig12341:1138..12761681462657.0207994-CDS-Ecto-sp13_S_contig12341:1138..1276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12341 1139..1276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12341.1955.1prot_Ecto-sp13_S_contig12341.1955.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12341 3..1276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12341.1955.1

>prot_Ecto-sp13_S_contig12341.1955.1 ID=prot_Ecto-sp13_S_contig12341.1955.1|Name=mRNA_Ecto-sp13_S_contig12341.1955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MHSVWTRKTRTWGYEVIRGIDEDDPWRVIRAFRRPTGLAFVDLNNQVEID
YGGYAWTQWMHRHFGDTALHIALKWKRHRAVKAILSLRPNWTIPNEAGVT
AEQLVLRLYGKSMARFKDEQEREYENDAMRAEEETMRNLMAAEQAARDKA
RLDFLEAQHAARTIGIDHEAAI
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mRNA from alignment at Ecto-sp13_S_contig12341:3..1276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12341.1955.1 ID=mRNA_Ecto-sp13_S_contig12341.1955.1|Name=mRNA_Ecto-sp13_S_contig12341.1955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1274bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12341:3..1276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTCCGTGTGGACTCGTAAAACACGAACCTGGGGGTACGAAGTCAT
TCGAGGGATAGACGAAGATGATCCCTGGCGCGTTATCCGGGCTTTCAGGC
GCCCGACTGGGCTGGCTTTCGTCGACCTCAACAATCAGGTCCGTTGCAAC
AACAGCACTACAACAGCAGCTGTACTGTAGATCTCCGGCGTCTCCGGTGA
TGTAGACTGCGGGATGTCGGTGGGTTCGAAGAGGACCTTGTATTGTGCAT
GTGATTTTCCGTGCTGTGTTCATTTTCTTCGTCTTGGTCGGAAAGCATTT
CAGCATGTCGTGCTGGCAATGTCAACTTTGGGCTTAAACTGTGTTCTTCG
AGAGATATTATTAGGCGCAACCTCAGGTAGACGCTCGTACACAGTAGCCC
CGTCGCTCCATCTACTACGTTACGCATGTATGTTGCTCCTACACGCTGTG
TCGAAAACGAAACATGATCCGACACAATCTTGCCCGGCTTCCTGCTGTCG
TCGTGACAAATCAAACACAACCTGCGTCCCGTCATCCAAATCAAAGGTGG
AGATTGACTATGGAGGCTATGCATGGACCCAGTGGATGCACCGACACTTC
GGAGACACCGCCCTCCATATTGCTCTCAAGTGGAAACGGCACCGAGCGGT
CAAAGCGATACTGTCGCTACGCCCGAACTGGACAATCCCCAACGAGGCTG
GCGTCACCGCAGAACAGCTCGTTCTCCGGCTGTACGGCAAGAGCATGGCG
AGATTCAAGGACGAGCAGGAACGCGAGTACGAAAACGACGCGATGCGAGC
GGAAGAAGAAACTATGAGAAAGTGCGTAGAGGTATGTAGGAACACTTCGA
TTTCATGTCGTACCAATAGTCTGTAGACTATGTACACAGCAGGAACAGAA
TGCAAGACATGTACGTTTGTCTACCTCCAGGGTTATTCATCACCTACAAA
GTGCAATCACCACTCTTGGAGTGTGAAGGCATCACCAACGACCAATGTTC
GCGATTCGCCTCTCTGCCCGTTGCCGACCGTCCACTTTATTGAACAAGAA
CGCGGTGTCGTTCTTGCCTCGGGTCAACCTAGCAACGTGCATGGGGGTGT
GTCTACCTACATTCCGTTGTCGGAAGCACCAAACGTGACGGTACTTCCCC
CCTGCCCCTCTCCTCTGGCAGCCTCATGGCCGCCGAACAAGCGGCGCGAG
ACAAGGCCCGCCTGGACTTCCTCGAAGCGCAGCACGCCGCACGTACCATC
GGCATCGACCACGAAGCAGCCATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12341:3..1276-

>mRNA_Ecto-sp13_S_contig12341.1955.1 ID=mRNA_Ecto-sp13_S_contig12341.1955.1|Name=mRNA_Ecto-sp13_S_contig12341.1955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12341:3..1276- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACTCCGTGTGGACTCGTAAAACACGAACCTGGGGGTACGAAGTCAT
TCGAGGGATAGACGAAGATGATCCCTGGCGCGTTATCCGGGCTTTCAGGC
GCCCGACTGGGCTGGCTTTCGTCGACCTCAACAATCAGGTGGAGATTGAC
TATGGAGGCTATGCATGGACCCAGTGGATGCACCGACACTTCGGAGACAC
CGCCCTCCATATTGCTCTCAAGTGGAAACGGCACCGAGCGGTCAAAGCGA
TACTGTCGCTACGCCCGAACTGGACAATCCCCAACGAGGCTGGCGTCACC
GCAGAACAGCTCGTTCTCCGGCTGTACGGCAAGAGCATGGCGAGATTCAA
GGACGAGCAGGAACGCGAGTACGAAAACGACGCGATGCGAGCGGAAGAAG
AAACTATGAGAAACCTCATGGCCGCCGAACAAGCGGCGCGAGACAAGGCC
CGCCTGGACTTCCTCGAAGCGCAGCACGCCGCACGTACCATCGGCATCGA
CCACGAAGCAGCCATC
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