mRNA_Ecto-sp13_S_contig8193.19546.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8193.19546.1
Unique NamemRNA_Ecto-sp13_S_contig8193.19546.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: D7G8G5_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G5_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.370e-9
Identity = 90/108 (83.33%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GGEILD           AQHELEHRRDQETSLARELA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV
Sbjct:  483 GGEILDXXXXXXXXXXXAQHELEHRRDQETSLARELAEKEEGITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 590
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: A0A835YNE8_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.410e-7
Identity = 42/108 (38.89%), Postives = 51/108 (47.22%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GGEI+DKA RQEA+LRQAQ ELE +R QE +LARELA                                                  ER D+LD IR+L+RQLKLK++
Sbjct:  475 GGEIMDKAARQEAQLRQAQQELELQRAQEAALARELAEREEGLADLDRDFQDLQEEVEVKTRKLKKLWGKYQAAQAEVADIQAEFQGEREDLLDAIRQLSRQLKLKDL 582
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: A0A2D4BNE5_PYTIN (Kinesin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNE5_PYTIN)

HSP 1 Score: 56.6 bits (135), Expect = 4.860e-7
Identity = 40/108 (37.04%), Postives = 49/108 (45.37%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GG+++DKA +QE ELR AQH++E ++ QE  LARELA                                                  E+ DMLDTIRELTRQLKLK V
Sbjct:  495 GGKVMDKAAKQERELRDAQHKIEEQKRQEMLLARELAEKEDSNMLLEEQFSTLQEEVDDKTRKLKKLWAKHKAACTEIEDLKTEFQTEKEDMLDTIRELTRQLKLKHV 602
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: A0A7S1TWQ3_9STRA (Kinesin-like protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWQ3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.140e-6
Identity = 38/108 (35.19%), Postives = 52/108 (48.15%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GG+I+DKA++QEA LR+AQ EL+ R++QE  LARELA                                                  ER DMLDTIR+LT+Q++LK++
Sbjct:  482 GGKIMDKARQQEAALRRAQLELDERKEQERELARELASKEEAAMQLEEQFGSLQEEVDVKTRKLKKLWAKYQAATSEIRDLEQEFQREREDMLDTIRDLTKQVRLKDL 589
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: F0YI09_AURAN (Kinesin-like protein n=3 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI09_AURAN)

HSP 1 Score: 53.9 bits (128), Expect = 4.280e-6
Identity = 39/108 (36.11%), Postives = 51/108 (47.22%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GG++LDKA +QEA LR+AQ ELE R++QE +LAR++                                                   ER DMLDTIR+L+RQLKLKE+
Sbjct:  485 GGKLLDKAAKQEAMLRRAQLELEERKEQEQALARQVRAKEEDIFALEEKYATKQDEADDKTRKLKKLWQRLQTCQGEAHDMQQEFQREREDMLDTIRQLSRQLKLKEL 592
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: A0A7S2K012_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K012_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.350e-6
Identity = 39/108 (36.11%), Postives = 50/108 (46.30%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GGEI DKA +QEA LR+A+ +L  RR++E  LAR++A                                                  ER+DML+TIRELTRQLKLKE+
Sbjct:   79 GGEIADKASKQEAALRKAEQDLVARREKELQLARQMAEQEETNLELEEKYSSLHDEVKAKTKKIEKLWTKFRQSKTEIKDLQSEFQAERNDMLETIRELTRQLKLKEL 186
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: A0A397EIP7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EIP7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.560e-5
Identity = 36/108 (33.33%), Postives = 49/108 (45.37%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GG+++DKA +QE ELR AQ +++ ++ QE  LARELA                                                  E+ DML+TIRELTRQLK+K+V
Sbjct:  148 GGQLMDKAAKQELELRDAQQKVDEQKRQEMQLARELAEREDSNMVLEEQFSSLQEEVDVKTKKLKKLWAKHKAASTEIEDLRAEFQTEKEDMLETIRELTRQLKIKQV 255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: A0A1W0A2K6_9STRA (Kinesin-like protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2K6_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.690e-5
Identity = 36/108 (33.33%), Postives = 50/108 (46.30%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GG++LDKA +QE ELR+AQ +++ ++ QE  LARELA                                                  E+ DML+TIRELTRQLK+K++
Sbjct:  276 GGQVLDKAAKQEQELREAQLKIDEQKRQEMQLARELAEREDSNLLLEEQFSSLQEEVDVKTKKLKKLWAKHKAASTEIEDLRTEFQAEKEDMLETIRELTRQLKIKQL 383
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: W4GGS9_9STRA (Kinesin-like protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGS9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.800e-5
Identity = 36/108 (33.33%), Postives = 49/108 (45.37%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLKEV 324
            GG+++DKA +QE ELR AQ +++ ++ QE  LARELA                                                  E+ DML+TIRELTRQLK+K+V
Sbjct:  494 GGQLMDKAAKQELELRDAQQKVDEQKRQEMQLARELAEREDSNMVLEEQFSSLQEEVDVKTKKLKKLWAKHKAASTEIEDLRAEFQTEKEDMLETIRELTRQLKIKQV 601
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Match: A0A0P1B473_PLAHL (Kinesin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B473_PLAHL)

HSP 1 Score: 51.2 bits (121), Expect = 3.810e-5
Identity = 37/106 (34.91%), Postives = 46/106 (43.40%), Query Frame = 1 
Query:    1 GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSDMLDTIRELTRQLKLK 318
            GG +LDKA +QE +LR+AQ  +E ++ QE  LARELA                                                  E+ DMLDT+RELTRQLKLK
Sbjct:  491 GGRVLDKAAKQERKLREAQSRIELQKQQELQLARELAEKEDSNMLLEEQYTNLQEVVDDKTRKLKKLWAKHKAATTEIEDLKVEFQAEKEDMLDTVRELTRQLKLK 596
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8193.19546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G8G5_ECTSI3.370e-983.33Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A835YNE8_9STRA1.410e-738.89Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A2D4BNE5_PYTIN4.860e-737.04Kinesin-like protein n=1 Tax=Pythium insidiosum Ta... [more]
A0A7S1TWQ3_9STRA3.140e-635.19Kinesin-like protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YI09_AURAN4.280e-636.11Kinesin-like protein n=3 Tax=Aureococcus anophagef... [more]
A0A7S2K012_9STRA5.350e-636.11Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A397EIP7_9STRA3.560e-533.33Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1W0A2K6_9STRA3.690e-533.33Kinesin-like protein n=1 Tax=Thraustotheca clavata... [more]
W4GGS9_9STRA3.800e-533.33Kinesin-like protein n=10 Tax=Aphanomyces astaci T... [more]
A0A0P1B473_PLAHL3.810e-534.91Kinesin-like protein n=1 Tax=Plasmopara halstedii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8193contigEcto-sp13_S_contig8193:484..1942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score65.1
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog2880.D7G8G5
Preferred nameKIF3C
Model size324
KEGG koko:K10394,ko:K11471,ko:K16606,ko:K20196,ko:K20197
KEGG Pathwayko04340,map04340
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000902,GO:0000904,GO:0001655,GO:0001701,GO:0001822,GO:0001947,GO:0002009,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003007,GO:0003008,GO:0003143,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005871,GO:0005873,GO:0005874,GO:0005875,GO:0005886,GO:0005912,GO:0005929,GO:0005930,GO:0006810,GO:0006890,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007100,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007605,GO:0007606,GO:0007608,GO:0008017,GO:0008021,GO:0008088,GO:0008089,GO:0008092,GO:0008150,GO:0008283,GO:0008284,GO:0008360,GO:0008544,GO:0008574,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009952,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010457,GO:0010564,GO:0010646,GO:0010647,GO:0010720,GO:0010970,GO:0010975,GO:0010976,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016939,GO:0017016,GO:0017048,GO:0017111,GO:0017137,GO:0019882,GO:0019884,GO:0019886,GO:0019894,GO:0019899,GO:0021532,GO:0021537,GO:0021542,GO:0021543,GO:0021761,GO:0021766,GO:0021904,GO:0021915,GO:0022008,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030031,GO:0030054,GO:0030100,GO:0030111,GO:0030133,GO:0030154,GO:0030177,GO:0030182,GO:0030424,GO:0030425,GO:0030426,GO:0030427,GO:0030496,GO:0030507,GO:0030705,GO:0030900,GO:0030951,GO:0030952,GO:0030993,GO:0031023,GO:0031175,GO:0031267,GO:0031344,GO:0031346,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032386,GO:0032388,GO:0032391,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032838,GO:0032878,GO:0032879,GO:0032880,GO:0032886,GO:0032989,GO:0032990,GO:0032991,GO:0033157,GO:0033267,GO:0034453,GO:0034454,GO:0035050,GO:0035239,GO:0035295,GO:0035371,GO:0035720,GO:0035735,GO:0035770,GO:0035869,GO:0036334,GO:0036464,GO:0036477,GO:0040011,GO:0042073,GO:0042127,GO:0042221,GO:0042330,GO:0042490,GO:0042592,GO:0042623,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0044085,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044450,GO:0044456,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0044877,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045787,GO:0045807,GO:0046907,GO:0047496,GO:0048002,GO:0048193,GO:0048259,GO:0048260,GO:0048285,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048839,GO:0048856,GO:0048858,GO:0048869,GO:0048872,GO:0050678,GO:0050679,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051020,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051225,GO:0051234,GO:0051239,GO:0051240,GO:0051270,GO:0051272,GO:0051299,GO:0051302,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051726,GO:0051781,GO:0051960,GO:0051962,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060284,GO:0060322,GO:0060341,GO:0060429,GO:0060562,GO:0060627,GO:0060632,GO:0060828,GO:0061351,GO:0061371,GO:0061564,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070382,GO:0070925,GO:0071598,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0072383,GO:0072384,GO:0072386,GO:0072393,GO:0090068,GO:0090087,GO:0090263,GO:0090307,GO:0090316,GO:0097014,GO:0097447,GO:0097458,GO:0097485,GO:0097542,GO:0097708,GO:0097730,GO:0097731,GO:0097733,GO:0098793,GO:0098930,GO:0099080,GO:0099081,GO:0099111,GO:0099503,GO:0099512,GO:0099513,GO:0099518,GO:0099568,GO:0120025,GO:0120031,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0120111,GO:0140014,GO:0150034,GO:1902850,GO:1903047,GO:1903827,GO:1903829,GO:1904115,GO:1904951,GO:1905126,GO:1905128,GO:1905515,GO:1990752,GO:1990904,GO:1990939,GO:2000026,GO:2000769,GO:2000771
Exons3
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
Cds size324
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464091.0066981-CDS-Ecto-sp13_S_contig8193:483..6391681464091.0066981-CDS-Ecto-sp13_S_contig8193:483..639Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8193 484..639 -
1681464091.018513-CDS-Ecto-sp13_S_contig8193:1207..12791681464091.018513-CDS-Ecto-sp13_S_contig8193:1207..1279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8193 1208..1279 -
1681464091.0278416-CDS-Ecto-sp13_S_contig8193:1846..19421681464091.0278416-CDS-Ecto-sp13_S_contig8193:1846..1942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8193 1847..1942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8193.19546.1prot_Ecto-sp13_S_contig8193.19546.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8193 484..1942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8193.19546.1

>prot_Ecto-sp13_S_contig8193.19546.1 ID=prot_Ecto-sp13_S_contig8193.19546.1|Name=mRNA_Ecto-sp13_S_contig8193.19546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
GGEILDKAQRQEAELRQAQHELEHRRDQETSLARELAEKEEGITELNREF
HDLEEEVEVKTKKLKKLWSKYQTAHREIKDIQEEFQQERSDMLDTIRELT
RQLKLKEV
back to top

mRNA from alignment at Ecto-sp13_S_contig8193:484..1942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8193.19546.1 ID=mRNA_Ecto-sp13_S_contig8193.19546.1|Name=mRNA_Ecto-sp13_S_contig8193.19546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8193:484..1942- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGAAATCCTGGACAAGGCTCAGAGACAAGAGGCGGAACTGCGACA
GGCACAGCACGAGCTCGAGCACCGAAGAGATCAGGAGACCTCGCTTGTGA
GACAATCAATTGCATCGCCCTTGACGAGAGTGGAGTCATGGTAGCTCACG
GCCACGGGCAAAATTTCGCGCTTTGTCGTGACGTCGGATATTTGGCGGGG
CAAGCGCCCTCGCTTGCTTTCTTCTGTCTCTTGCGAGGGCATGTGTTTCG
CCCAAAATTAGCACATCGCCCATAACAACACAGTTGTTACGGCAAAAACA
TTCGATCGACGAGGAACGTTCGATAGGGACGGGGGAATCGGGGCGAGAAA
TACCTTCGTGTTTTACCACTGATCACTCACGCGTTTGAGACGGAGCACCG
TTGCTGCTACCAGCACAATCTCACTAATCAAGTTGAGGGATAAGTTCACT
AGTGGGGAGAGGGTTCAAGGTGACGCAAGCGATCGCGGGAAGGGGAAGCT
CTGAGGCTGTGAGACTCTTGCTGTTCCCTGTGACTACCTCCCCACCCTAC
CCCCCCTCCCTCATTTTAAGGTGCCCGTCCTTCTGAAACCTTTTTTTCCC
GTGCCTCACGGAAGTTGATCCATCCCTCTCGCGGTTTCGTGCACGTCCTC
CACGCGATTACAGGCTCGAGAGCTAGCCGAAAAAGAGGAAGGGATCACCG
AGCTCAATCGCGAGTTCCACGACTTGGAAGAAGAGGTGCGGTTGACGCCG
ACCAACACGGGCGGTTCCGTTCACCCCACCGCAGTCAGCCTGCCCCAGTC
TTGAACGAAGCTGCGCCCGCTCGTCGTACACTGCCAGTAGTGGGATGGAT
AATCACAGTCCGTGAGCCCACGACCGAGCGGGCGATCAGTGCTGACTCCC
ACGTCAGCTTTACGATGTAGAATTTTTTTGGATAGGGATGAAAAATACAT
GTGCGATGTGTACTTTACGTTCCCGGCACGTGCTCCACTCTATACCGTGC
TAATTGCGGGTGGCGTACTTTCTTTTGCGGCACACGCGAGTGCGGTGGCA
CTCTGTAAGCTAAGCTCTGCATGCTATAGAGACCAACCTCCCTAGGCTGT
CGTTTAGATCGCACCGCTCCAAAGGCACACAGCAAGCGACACGAAAACAC
ACATTGTTCTTGGCGTATGAAAACTACTATTGCGAGGTTGAGCTGTTCAC
CGCGCGCTTGTTGTGCCAACGATCCCTACCGGCGGTTCGTTGTGCCCTAA
TCGTCACATTTCCCTCCAATCACGGCGGGTCATTGACGTTCTCGCCTGCT
TAGGTGGAGGTGAAGACGAAGAAGCTCAAGAAGCTGTGGAGCAAGTACCA
GACGGCGCACCGCGAGATCAAGGACATCCAGGAGGAGTTCCAGCAGGAGA
GGTCCGACATGCTCGACACCATTCGAGAGCTAACAAGACAGCTCAAGCTG
AAGGAGGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8193:484..1942-

>mRNA_Ecto-sp13_S_contig8193.19546.1 ID=mRNA_Ecto-sp13_S_contig8193.19546.1|Name=mRNA_Ecto-sp13_S_contig8193.19546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8193:484..1942- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGAAATCCTGGACAAGGCTCAGAGACAAGAGGCGGAACTGCGACA
GGCACAGCACGAGCTCGAGCACCGAAGAGATCAGGAGACCTCGCTTGCTC
GAGAGCTAGCCGAAAAAGAGGAAGGGATCACCGAGCTCAATCGCGAGTTC
CACGACTTGGAAGAAGAGGTGGAGGTGAAGACGAAGAAGCTCAAGAAGCT
GTGGAGCAAGTACCAGACGGCGCACCGCGAGATCAAGGACATCCAGGAGG
AGTTCCAGCAGGAGAGGTCCGACATGCTCGACACCATTCGAGAGCTAACA
AGACAGCTCAAGCTGAAGGAGGTT
back to top