mRNA_Ecto-sp13_S_contig81920.19545.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81920.19545.1
Unique NamemRNA_Ecto-sp13_S_contig81920.19545.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.080e-26
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV
Sbjct:  214 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 267
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A7S1ZWN5_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWN5_TRICV)

HSP 1 Score: 76.6 bits (187), Expect = 2.380e-16
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            ++PMES+VG FRI+QPGSSVATSL  GE+  K VG+L++RG  FRL+ VPLSQV
Sbjct:   54 IDPMESVVGMFRITQPGSSVATSLTAGESERKRVGILDVRGQSFRLRPVPLSQV 107
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A7S0C895_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C895_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.700e-16
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            +EP +SLVGTFRI QPGSSVATSL  GE+V K+VG+LEIRG +FR+  +PL +V
Sbjct:   78 IEPTDSLVGTFRICQPGSSVATSLTPGESVRKHVGILEIRGEEFRITPLPLVEV 131
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.880e-16
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            +EP ES VGTFRISQPGSSVATSL  GEA  K VG+L+IRG  FRL+ VPLSQV
Sbjct:  292 IEPDESAVGTFRISQPGSSVATSLTAGEAEKKQVGILDIRGQSFRLRPVPLSQV 345
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 36/54 (66.67%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            +E MES VGT+RI+QPGSSVATSL  GE+V K+VG+L++RGN FR++ +PLSQV
Sbjct:  326 IEAMESAVGTYRITQPGSSVATSLSAGESVRKHVGILDVRGNQFRIKKLPLSQV 379
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A7S1Z5E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z5E1_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.020e-15
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            + P ESLVGTFRI+QPGSSVATSL +GEAV K++GLL+IRG  FRL+ +PLS V
Sbjct:  201 IVPDESLVGTFRITQPGSSVATSLVQGEAVRKHIGLLDIRGCQFRLKPIPLSMV 254
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: B8C3H0_THAPS (Mre11_DNA_bind domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3H0_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 5.060e-15
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            + P ESLVGTFRISQPGSSVATSL +GE   K+VG+L+IRG  FRL+++PL  V
Sbjct:  247 ITPQESLVGTFRISQPGSSVATSLTQGEGRQKHVGILDIRGQQFRLKSIPLGSV 300
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A1E7FCA9_9STRA (DNA repair exonuclease (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCA9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.330e-14
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            +E  ES+VGTFRISQPGSSVATSL EGE++ K +G+L+IR   FRL A+PL+QV
Sbjct:  293 IEVTESVVGTFRISQPGSSVATSLVEGESMRKKIGILDIREGQFRLTAIPLTQV 346
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A7S2K0M4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0M4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.660e-14
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            +E  ESL+GT+RISQPGSSVATSL  GE   K+VG+L+IR   FRL ++PL+QV
Sbjct:   79 IELQESLIGTYRISQPGSSVATSLSPGECERKSVGILDIREKQFRLNSIPLTQV 132
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BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Match: A0A397DWC6_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DWC6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.180e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VEPMESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQV 162
            +E  ES+ G F I+QPGSSVATSL EGEA PK +GLLE+R N+FRL++VPL  V
Sbjct:  281 IEAEESIKGDFYITQPGSSVATSLVEGEAKPKKIGLLEVRNNNFRLRSVPLKTV 334
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81920.19545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH84_9PHAE3.080e-26100.00Mre11_DNA_bind domain-containing protein n=2 Tax=E... [more]
A0A7S1ZWN5_TRICV2.380e-1666.67Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S0C895_9STRA5.700e-1666.67Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S4MXX5_9STRA5.880e-1674.07Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2UFV9_9STRA1.500e-1566.67Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1Z5E1_9STRA2.020e-1570.37Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
B8C3H0_THAPS5.060e-1566.67Mre11_DNA_bind domain-containing protein (Fragment... [more]
A0A1E7FCA9_9STRA1.330e-1466.67DNA repair exonuclease (Fragment) n=1 Tax=Fragilar... [more]
A0A7S2K0M4_9STRA2.660e-1462.96Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A397DWC6_9STRA7.180e-1464.81Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81920contigEcto-sp13_S_contig81920:398..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score102.8
Seed ortholog evalue4.7e-20
Seed eggNOG ortholog2880.D7FN26
Preferred nameMRE11
Model size162
KEGG koko:K10865
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000785,GO:0000791,GO:0000793,GO:0000794,GO:0000795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0099086
Exons1
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0420@1,KOG2310@2759
Cds size153
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.967277-UTR-Ecto-sp13_S_contig81920:397..4061681464090.967277-UTR-Ecto-sp13_S_contig81920:397..406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig81920 398..406 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.9790025-CDS-Ecto-sp13_S_contig81920:406..5591681464090.9790025-CDS-Ecto-sp13_S_contig81920:406..559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81920 407..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81920.19545.1prot_Ecto-sp13_S_contig81920.19545.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81920 407..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81920.19545.1

>prot_Ecto-sp13_S_contig81920.19545.1 ID=prot_Ecto-sp13_S_contig81920.19545.1|Name=mRNA_Ecto-sp13_S_contig81920.19545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MESLVGTFRISQPGSSVATSLCEGEAVPKNVGLLEIRGNDFRLQAVPLSQ
V
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mRNA from alignment at Ecto-sp13_S_contig81920:398..559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81920.19545.1 ID=mRNA_Ecto-sp13_S_contig81920.19545.1|Name=mRNA_Ecto-sp13_S_contig81920.19545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81920:398..559+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGAGCCGATGGAGTCTCTGGTGGGAACATTCCGCATCTCCCAGCCGGG
GTCCTCGGTGGCGACCTCCCTGTGCGAGGGCGAGGCCGTGCCGAAGAACG
TGGGGCTGCTCGAGATCAGGGGGAACGACTTCCGCCTCCAGGCGGTCCCG
CTCTCGCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81920:398..559+

>mRNA_Ecto-sp13_S_contig81920.19545.1 ID=mRNA_Ecto-sp13_S_contig81920.19545.1|Name=mRNA_Ecto-sp13_S_contig81920.19545.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81920:398..559+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCTCTGGTGGGAACATTCCGCATCTCCCAGCCGGGGTCCTCGGT
GGCGACCTCCCTGTGCGAGGGCGAGGCCGTGCCGAAGAACGTGGGGCTGC
TCGAGATCAGGGGGAACGACTTCCGCCTCCAGGCGGTCCCGCTCTCGCAG
GTG
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