prot_Ecto-sp13_S_contig8191.19543.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8191.19543.1
Unique Nameprot_Ecto-sp13_S_contig8191.19543.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length112
Homology
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 2.650e-65
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0
Query:    1 MIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTY 112
            MIKPRDSLVASPGYAFVSADYSQVEMRLMAHLS DPDLLKVFADGGDVFRTIAAALKGRGKKA DITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKT+
Sbjct:  212 MIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKKAEDITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTF 323          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 9.070e-61
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0
Query:    1 MIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTY 112
            M+KPRDSLVASPGYAFVSADYSQVEMRLMAHLS DPDLLKVFADGGDVFRTIAAALKGRG KA DITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVL TY
Sbjct: 2012 MMKPRDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGNKAEDITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLNTY 2123          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A7S3XVL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVL9_HETAK)

HSP 1 Score: 102 bits (254), Expect = 4.490e-24
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    2 IKPRDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTY 112
            I PRD  +A+PG+  ++ADYSQVEMRLMAH S DP L  +F  GGDVFR IA+  + RG   A +T E R+  K V YG+LYG   +AL  +L +S  EA ++++  L+TY
Sbjct:   17 IIPRDFFMAAPGHILIAADYSQVEMRLMAHFSRDPGLQALFKSGGDVFRGIAS--RWRGVPEAAVTPELRKACKQVAYGILYGAGPNALRQELGVSYQEAERMQRRFLETY 125          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A536ZUN4_9PROT (DNA polymerase I n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536ZUN4_9PROT)

HSP 1 Score: 98.6 bits (244), Expect = 1.090e-21
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 0
Query:    5 RDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEA 101
            R++ +ASPG+  VSADYSQVE+R+MAHLS D  LLK F+DG D+ R  AA + G    AAD+T ++RR  K V +G++YG SA  L  QL + R  A
Sbjct:  684 REAFIASPGHVLVSADYSQVELRIMAHLSEDASLLKAFSDGDDIHRATAAEIFG--VPAADVTADQRRYIKAVNFGLIYGMSAFGLAVQLNIERSAA 778          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A2E6G850_9GAMM (DNA polymerase I n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2E6G850_9GAMM)

HSP 1 Score: 95.5 bits (236), Expect = 1.310e-20
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 0
Query:    5 RDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEA 101
            R++ +A+PGY  ++ADYSQ+E+R+MAHLS DP+L+  FA G DV RT AA +      A+ ITE +RR  K + +G++YG SA  L  QL ++R +A
Sbjct:  679 REAFIAAPGYKIIAADYSQIELRIMAHLSRDPNLIAAFAKGEDVHRTTAAEIFSA--PASQITESQRRSAKAINFGLIYGMSAFGLSKQLNIARKDA 773          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A3B8T129_9ALTE (DNA polymerase I (Fragment) n=1 Tax=Glaciecola sp. TaxID=1905676 RepID=A0A3B8T129_9ALTE)

HSP 1 Score: 95.1 bits (235), Expect = 1.760e-20
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    3 KPRDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTY 112
            K R++ +A PGY  V+ADYSQ+E+R+MAHLS DP LL  FA+G DV +  A+ + G   ++  +T E+RR +K + +G++YG SA  L  QL + R EA    QT + TY
Sbjct:  510 KVREAFIARPGYKIVAADYSQIELRIMAHLSKDPGLLHAFANGLDVHKATASEVFGVPLES--VTSEQRRSSKAINFGLIYGMSAFGLAKQLNIPRNEA----QTYMNTY 613          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A536SNA4_9PROT (DNA polymerase I n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SNA4_9PROT)

HSP 1 Score: 95.1 bits (235), Expect = 1.780e-20
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 0
Query:    5 RDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEA 101
            R++ VA  G+A VSADYSQVE+R+MAH+S D +LL+ FA G D+ R  AA + GR  K  ++T EERR  K++ +G++YG SA  L  QL L R  A
Sbjct:  680 REAFVAPKGHAIVSADYSQVELRIMAHISGDENLLRAFAAGEDIHRATAAEVFGRSLK--EVTPEERRYAKVINFGLIYGMSAFGLAQQLGLERATA 774          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A348MT94_9ALTE (DNA polymerase I n=1 Tax=Glaciecola sp. TaxID=1905676 RepID=A0A348MT94_9ALTE)

HSP 1 Score: 95.1 bits (235), Expect = 1.790e-20
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 0
Query:    3 KPRDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTY 112
            K R++ +A PGY  V+ADYSQ+E+R+MAHLS DP LL  FA+G DV +  A+ + G   ++  +T E+RR +K + +G++YG SA  L  QL + R EA    QT + TY
Sbjct:  706 KVREAFIARPGYKIVAADYSQIELRIMAHLSKDPGLLHAFANGLDVHKATASEVFGVPLES--VTSEQRRSSKAINFGLIYGMSAFGLAKQLNIPRNEA----QTYMNTY 809          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A2N5Y7L2_9GAMM (DNA polymerase I n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y7L2_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 2.430e-20
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 0
Query:    5 RDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPEAFKIRQTVLKTY 112
            R + +A+PGY  V+ADYSQ+E+R+MAHLSSD  LL+ F DG DV +  AA + G G ++  ++ E+RR+ K + +G++YG SA  L  QL+L R EA +  +   + Y
Sbjct:  668 RQAFIAAPGYCIVAADYSQIELRIMAHLSSDEGLLRAFRDGLDVHQATAAEVFGVGLES--VSPEQRRRAKAINFGLIYGMSAFGLARQLQLGRKEAQEYIERYFERY 773          
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Match: A0A1G0IZ69_9GAMM (DNA polymerase I n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A1G0IZ69_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 3.310e-20
Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 0
Query:    5 RDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFRTIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSR 98
            R + +A PGY  VSADYSQ+E+R+MAH S DP LL  F++G D+ R  AA + G   K  D+T E+RRQ K++ +G+LYG SA  L  +L  +R
Sbjct:  647 RKAFIAPPGYFIVSADYSQIELRIMAHFSQDPKLLHAFSNGTDIHRATAAEVFG--VKPEDVTPEQRRQAKVINFGILYGMSAFGLAKELGTTR 738          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8191.19543.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM14_ECTSI2.650e-6597.32DNA polymerase I (POL I) n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L306_9PHAE9.070e-6195.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XVL9_HETAK4.490e-2449.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A536ZUN4_9PROT1.090e-2151.55DNA polymerase I n=1 Tax=Betaproteobacteria bacter... [more]
A0A2E6G850_9GAMM1.310e-2047.42DNA polymerase I n=1 Tax=Porticoccaceae bacterium ... [more]
A0A3B8T129_9ALTE1.760e-2045.45DNA polymerase I (Fragment) n=1 Tax=Glaciecola sp.... [more]
A0A536SNA4_9PROT1.780e-2050.52DNA polymerase I n=1 Tax=Betaproteobacteria bacter... [more]
A0A348MT94_9ALTE1.790e-2045.45DNA polymerase I n=1 Tax=Glaciecola sp. TaxID=1905... [more]
A0A2N5Y7L2_9GAMM2.430e-2044.44DNA polymerase I n=1 Tax=Kineobactrum sediminis Ta... [more]
A0A1G0IZ69_9GAMM3.310e-2048.94DNA polymerase I n=2 Tax=unclassified Gammaproteob... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002298DNA polymerase APRINTSPR00868DNAPOLIcoord: 15..38
score: 53.37
coord: 71..96
score: 42.01
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 2..112
IPR001098DNA-directed DNA polymerase, family A, palm domainSMARTSM00482polaultra3coord: 5..112
e-value: 1.1E-5
score: -29.4
IPR001098DNA-directed DNA polymerase, family A, palm domainPFAMPF00476DNA_pol_Acoord: 5..112
e-value: 9.2E-30
score: 103.9
NoneNo IPR availableGENE3D1.10.150.20coord: 24..112
e-value: 4.0E-21
score: 77.5
NoneNo IPR availablePANTHERPTHR10133:SF27DNA POLYMERASE THETAcoord: 2..112
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 4..112

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8191contigEcto-sp13_S_contig8191:4362..5938 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8191.19543.1mRNA_Ecto-sp13_S_contig8191.19543.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8191 4362..5938 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8191.19543.1 ID=prot_Ecto-sp13_S_contig8191.19543.1|Name=mRNA_Ecto-sp13_S_contig8191.19543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MIKPRDSLVASPGYAFVSADYSQVEMRLMAHLSSDPDLLKVFADGGDVFR
TIAAALKGRGKKAADITEEERRQTKIVVYGVLYGQSADALVPQLRLSRPE
AFKIRQTVLKTY
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002298DNA_polymerase_A
IPR001098DNA-dir_DNA_pol_A_palm_dom