mRNA_Ecto-sp13_S_contig8191.19542.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8191.19542.1
Unique NamemRNA_Ecto-sp13_S_contig8191.19542.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8191.19542.1 vs. uniprot
Match: D7FM14_ECTSI (DNA polymerase I (POL I) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM14_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 1.010e-81
Identity = 124/132 (93.94%), Postives = 127/132 (96.21%), Query Frame = 1 
Query:    1 TLAPRGDAASMMSTGEIVAIVEDRCLNDPVHRHTDPDSDVGNGPAAARAPEDPAVDAGSMASLWRESGHSYSSWEAESTRQVLVRLGGRYGRVYSYPADKVFRVQANFFSDAKAEAMKEGGLGARCPWFANE 396
            TLAPRGDAASMMSTGEIVAIVED+CLNDPVHRHTDPD DVGNGP AARAPEDPAV AGSMASLWRESGHSYSSWEAESTRQVLVRLGGR+GRVYSYPADKVFRVQANFFSDA AEAMK+GGLGARCPWFA E
Sbjct:   79 TLAPRGDAASMMSTGEIVAIVEDKCLNDPVHRHTDPDDDVGNGPPAARAPEDPAVGAGSMASLWRESGHSYSSWEAESTRQVLVRLGGRHGRVYSYPADKVFRVQANFFSDANAEAMKDGGLGARCPWFAKE 210
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BLAST of mRNA_Ecto-sp13_S_contig8191.19542.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 3.360e-73
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 1 
Query:    4 LAPRGDAASMMSTGEIVAIVEDRCLNDPVHRHTDPDSDVGNGPAAARAPEDPAVDAGSMASLWRESGHSYSSWEAESTRQVLVRLGGRYGRVYSYPADKVFRVQANFFSDAKAEAMKEGGLGARCPWFANE 396
            LAPRG+A +MMSTGEIVA+VED+CLNDPVHRHTDPD DVGNGP AARAPEDPAV AGSMASLWRESGHSYSSWEAESTRQVLVRLGGR GRVYSYPADKVFRVQANFFSDAKAEAMKEGGLGARCPWFA E
Sbjct: 1881 LAPRGNA-TMMSTGEIVAVVEDKCLNDPVHRHTDPDGDVGNGPPAARAPEDPAVGAGSMASLWRESGHSYSSWEAESTRQVLVRLGGRRGRVYSYPADKVFRVQANFFSDAKAEAMKEGGLGARCPWFAKE 2010
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8191.19542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM14_ECTSI1.010e-8193.94DNA polymerase I (POL I) n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L306_9PHAE3.360e-7392.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8191contigEcto-sp13_S_contig8191:3139..4358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score238.0
Seed ortholog evalue2.3e-60
Seed eggNOG ortholog2880.D7FM14
Preferred namePOLQ
Model size397
KEGG koko:K02349
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000724,GO:0000725,GO:0000726,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002566,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003824,GO:0003887,GO:0004386,GO:0004518,GO:0004527,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006282,GO:0006284,GO:0006289,GO:0006302,GO:0006303,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008094,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009653,GO:0009791,GO:0009888,GO:0009892,GO:0009933,GO:0009987,GO:0010468,GO:0010564,GO:0010569,GO:0010605,GO:0016043,GO:0016445,GO:0016446,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022607,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0036297,GO:0042623,GO:0042802,GO:0043142,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045738,GO:0045910,GO:0045934,GO:0046483,GO:0048507,GO:0048519,GO:0048523,GO:0048532,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051239,GO:0051259,GO:0051260,GO:0051301,GO:0051575,GO:0051716,GO:0051726,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0097681,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1902749,GO:1990067,GO:2000011,GO:2000026,GO:2000042,GO:2000779,GO:2000780,GO:2001020,GO:2001021
Exons3
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
Cds size366
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.7779684-UTR-Ecto-sp13_S_contig8191:3138..31681681464090.7779684-UTR-Ecto-sp13_S_contig8191:3138..3168Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8191 3139..3168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.791016-CDS-Ecto-sp13_S_contig8191:3168..33181681464090.791016-CDS-Ecto-sp13_S_contig8191:3168..3318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8191 3169..3318 +
1681464090.801614-CDS-Ecto-sp13_S_contig8191:3900..40201681464090.801614-CDS-Ecto-sp13_S_contig8191:3900..4020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8191 3901..4020 +
1681464090.8130045-CDS-Ecto-sp13_S_contig8191:4262..43581681464090.8130045-CDS-Ecto-sp13_S_contig8191:4262..4358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8191 4263..4358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8191.19542.1prot_Ecto-sp13_S_contig8191.19542.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8191 3169..4358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8191.19542.1

>prot_Ecto-sp13_S_contig8191.19542.1 ID=prot_Ecto-sp13_S_contig8191.19542.1|Name=mRNA_Ecto-sp13_S_contig8191.19542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=122bp
MMSTGEIVAIVEDRCLNDPVHRHTDPDSDVGNGPAAARAPEDPAVDAGSM
ASLWRESGHSYSSWEAESTRQVLVRLGGRYGRVYSYPADKVFRVQANFFS
DAKAEAMKEGGLGARCPWFANE
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mRNA from alignment at Ecto-sp13_S_contig8191:3139..4358+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8191.19542.1 ID=mRNA_Ecto-sp13_S_contig8191.19542.1|Name=mRNA_Ecto-sp13_S_contig8191.19542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1220bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8191:3139..4358+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCTGGCACCCAGAGGAGACGCGGCCAGCATGATGAGCACGGGTGAGAT
CGTGGCCATCGTGGAAGACAGGTGCCTCAATGACCCCGTCCACAGGCACA
CTGATCCCGATAGTGACGTCGGAAACGGACCAGCAGCCGCTCGCGCTCCG
GAAGACCCCGCAGTTGACGCCGGAAGCATGGTACGAACGGTGTGCGGGTG
ATTGTCTTCCTGGAGGGGACCAGGCCTTGTCTGTGGGGCAAAAGTCTCCG
ATTGTCGGGCGGGTTGTAGTTGTGGGAATCCCGCGGTGTTTTTTGTGGTG
GTGTGTGTCCTGATCGGTGTCGGTGAATGGATATGACATTCTCGTGGTTC
AGAGAGGTTGTTATCGAGGAGCCCTCTGTGGACAGAGAGCGTCACGGGAT
GAAGGCGTTTTGGTGTCGGGGTGCGGGTGGAGCATAAGGAATCGCTGTGT
GTGAACCTGGCTGTATCTTTCACAACGTCGGCCCTCGGTGCCAGGAGTAC
AGAAGGAGCAATGTCGAGAGGTACACGTGCTTTTTGTGCCACGGGTAAGG
AAATCAGGTCTGCAAGAGTCGTGCGTCCAGATTGCGACATGTATGACGGC
TACGCCATAGCCACAGCAAGTTCTGTTGCTTCGACGGCTCCCCACCCTTG
CCCTCCCCGAAAAATGCTGACCTAGTTATACATCGCGAAAGCTGTTACAA
TTTATATACCAATCCCTTGCCTTTATGGGGACAAAAAACCCTGGTGTTTG
AATTATTTGCAGGCGTCTCTTTGGCGGGAGAGCGGTCACTCGTACTCGTC
CTGGGAGGCAGAGAGCACGAGGCAGGTGCTGGTGAGGCTGGGCGGTCGAT
ACGGAAGGGTATACAGCTACCCTGCTGATAAGGTAAGGGCGAGAGTGAGA
GTGAGACAGACAGAGACAGGAGAGGGAGAGGAAGGACTGCGTCGTAGTAC
TGTAACGAGTTGCTGAGAGGCGTGCCCAGAGTAGCACTCATGTGAAGGAT
ATAAAACGCTACTGCGGCTGTGCTCTTGAAATCATGCAGAATTTTGTTTC
TATTTCAAGATCTGTGTCGTCGGAATTGTCGTCGTCAACGCCGTTGACGT
CATCGACAATGCTGTCGTGGCCAGGTCTTCCGAGTGCAGGCGAACTTTTT
CAGCGACGCGAAAGCCGAGGCCATGAAGGAAGGGGGGCTGGGGGCCAGGT
GTCCCTGGTTCGCCAATGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8191:3139..4358+

>mRNA_Ecto-sp13_S_contig8191.19542.1 ID=mRNA_Ecto-sp13_S_contig8191.19542.1|Name=mRNA_Ecto-sp13_S_contig8191.19542.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8191:3139..4358+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAGCACGGGTGAGATCGTGGCCATCGTGGAAGACAGGTGCCTCAA
TGACCCCGTCCACAGGCACACTGATCCCGATAGTGACGTCGGAAACGGAC
CAGCAGCCGCTCGCGCTCCGGAAGACCCCGCAGTTGACGCCGGAAGCATG
GCGTCTCTTTGGCGGGAGAGCGGTCACTCGTACTCGTCCTGGGAGGCAGA
GAGCACGAGGCAGGTGCTGGTGAGGCTGGGCGGTCGATACGGAAGGGTAT
ACAGCTACCCTGCTGATAAGGTCTTCCGAGTGCAGGCGAACTTTTTCAGC
GACGCGAAAGCCGAGGCCATGAAGGAAGGGGGGCTGGGGGCCAGGTGTCC
CTGGTTCGCCAATGAA
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