mRNA_Ecto-sp13_S_contig8190.19541.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8190.19541.1
Unique NamemRNA_Ecto-sp13_S_contig8190.19541.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: D8LND0_ECTSI (Replication factor C subunit 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LND0_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 2.110e-126
Identity = 226/261 (86.59%), Postives = 230/261 (88.12%), Query Frame = 1 
Query: 1000 FRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAAKPSQPKTAVVNPYASMQAATKTKAIVNPYGAAVIAGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNPGQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            FRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKT IIDEDGLFKMLRDSNP+G+QP G           APASKPA A P QPK AVVNPYASMQAA K KA VNP+GAAVIAGGKGKAPAGK+P  A   XXXXXXXXXXX    AAAV QNPGQMWVDKYKP SSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT
Sbjct:  229 FRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTRIIDEDGLFKMLRDSNPKGQQPPGXXXXXXXXXXXAPASKPAVANPYQPKKAVVNPYASMQAAAKKKAAVNPFGAAVIAGGKGKAPAGKSP--AGTSXXXXXXXXXXXGARAAAAVRQNPGQMWVDKYKPTSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 487
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: A0A2K3D450_CHLRE (Replication factor C subunit 1 n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D450_CHLRE)

HSP 1 Score: 138 bits (348), Expect = 1.690e-30
Identity = 101/253 (39.92%), Postives = 122/253 (48.22%), Query Frame = 1 
Query: 1024 ARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAAKPSQPKTAVVNPYASMQAATKTKAIVNPYGAAVIAGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNPGQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            A   PPN+G KE P G   CL GK FV+SGVLDSLGRE A D IK++GG+VTGAVS +T FLV+G     GR     SKY++A    T +IDEDGLF ++R S P            P+  AAAP   PA+A                             GA   AG     PAG                        AAA      Q+WVDKYKP +S+ ++G+   V  LK WL NWE  HL+G  APT
Sbjct:  371 ASAPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRVTGAVSGKTSFLVVGH--HTGR-----SKYRKAREHGTKVIDEDGLFSLIRASEPF----------IPAENAAAP---PASAPXXXXXXXXXXXXXXXXXXXXXXXAAQRPGAGAAAGPSSARPAG-------------------VTRQPAAAGDAGQYQLWVDKYKPRNSAELVGNNTLVDNLKSWLMNWEQVHLRGGAAPT 584
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: A0A8J4D1N3_9CHLO (Replication factor C subunit 1 n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D1N3_9CHLO)

HSP 1 Score: 131 bits (330), Expect = 2.280e-28
Identity = 101/252 (40.08%), Postives = 133/252 (52.78%), Query Frame = 1 
Query: 1036 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAAKPSQ---PKTAVVNPYASMQAATKTKAIVNPYGAAVIAGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNPGQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            PPN  +KEVP G   CL G+ FV++GVLDSL R  AEDLIK++GGKVT  VS +T FL+ G   + GR     SKY+ A   KT +IDEDGLF +LR S P   QP G     P++A+    + PA+   S       A   P  S++   K +  V PY A V    + + P                        TGA++V  +  Q+WVDKYKP +S  ++G+   V  LK WL+ WE  HL+GA  PT
Sbjct:  132 PPNYRRKEVPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLAGH--NCGR-----SKYRMAKQHKTKVIDEDGLFALLRASAPFA-QPEG-----PTTASTPGTAGPASIPTSNFFGSTVAAAGPGCSVR---KPEGPVAPYNAGV----RSQLP-----------------------ITGASSVGGSLNQLWVDKYKPANSFELVGNNTLVANLKQWLECWEQVHLRGAAVPT 340
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: D8UHI8_VOLCA (Replication factor C subunit 1 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UHI8_VOLCA)

HSP 1 Score: 131 bits (330), Expect = 2.590e-28
Identity = 97/251 (38.65%), Postives = 126/251 (50.20%), Query Frame = 1 
Query: 1036 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAAKPSQPKTAVVNPYASMQAATKTKAIVNPYG--AAVIAGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNPGQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            PPN  KKEVP G   CL G+ FV++G+LDSL R  AEDLIK++GGKVT +VS +T F+V+G     G       KY+ A   KT +IDEDGLF +L+                 +SA+ APA +PAAA              +  AA  +    + +G  AA  AG     P G  P A                   A        Q+WVDKYKP +SS ++G+   V  LK WL++WE  HL+GA APT
Sbjct:  203 PPNYRKKEVPRGHPDCLTGRTFVITGILDSLMRPEAEDLIKRHGGKVTKSVSGKTAFVVVGHNCGRG-------KYRDAKQHKTKLIDEDGLFALLK-----------------ASASFAPAERPAAA--------------AAAAAIPSSICTSNFGPTAAARAG-----PGGAGPSAVRKPTGPYTTPQPSQPP--AXXXXXGLYQLWVDKYKPRNSSELVGNNTLVANLKQWLESWEQVHLRGAAAPT 408
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: A0A8J4GSG1_9CHLO (BRCT domain-containing protein n=5 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GSG1_9CHLO)

HSP 1 Score: 131 bits (330), Expect = 2.950e-28
Identity = 101/252 (40.08%), Postives = 133/252 (52.78%), Query Frame = 1 
Query: 1036 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAAKPSQ---PKTAVVNPYASMQAATKTKAIVNPYGAAVIAGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNPGQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            PPN  +KEVP G   CL G+ FV++GVLDSL R  AEDLIK++GGKVT  VS +T FL+ G   + GR     SKY+ A   KT +IDEDGLF +LR S P   QP G     P++A+    + PA+   S       A   P  S++   K +  V PY A V    + + P                        TGA++V  +  Q+WVDKYKP +S  ++G+   V  LK WL+ WE  HL+GA  PT
Sbjct:  345 PPNYRRKEVPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLAGH--NCGR-----SKYRMAKQHKTKVIDEDGLFALLRASAPFA-QPEG-----PTTASTPGTAGPASIPTSNFFGSTVAAAGPGCSVR---KPEGPVAPYNAGV----RSQLP-----------------------ITGASSVGGSLNQLWVDKYKPANSFELVGNNTLVANLKQWLECWEQVHLRGAAVPT 553
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: A0A835T5C5_CHLIN (Replication factor C subunit 1 n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5C5_CHLIN)

HSP 1 Score: 130 bits (326), Expect = 9.520e-28
Identity = 102/253 (40.32%), Postives = 125/253 (49.41%), Query Frame = 1 
Query: 1024 ARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAAKPSQPKTAVVNPYASMQAATKTKAIVNPYGAAVIAGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNPGQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            A + PPN+G KE P G   CL GK FV+SGVLDSLGRE A D IK++GG+ T AVS +T FL+ G     GR     SKY++A    T +IDEDGLF ++R S P            P  AAAA    PAA     P  A                      AA  A G G + A  A G A                  AAA  Q+  Q+WVDKYKP +S  ++G+   V  LK WL +WE  +L+GA APT
Sbjct:  372 ATVPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGREEATDYIKRHGGRTTQAVSGKTTFLLAGHHC--GR-----SKYRKAREHSTKVIDEDGLFALIRASEPF----------IPGGAAAAAPPAPAAXXXXAP--ASQXXXXXXXXXXXXXXXXXXXAAAQRAAGAGPSSARPA-GVARQP---------------AAAGDQSQYQLWVDKYKPRNSVELVGNNTLVANLKSWLMSWEQVNLRGAAAPT 589
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: A0A836BBT5_9CHLO (Replication factor C subunit 1 n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBT5_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 1.660e-26
Identity = 96/251 (38.25%), Postives = 123/251 (49.00%), Query Frame = 1 
Query: 1030 LAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAAKPSQPKTAVVNPYASMQAATKTKAIVNPYGAAVIAGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNPGQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            + PPN+G KE P G   CL GK FV+SGVLDSLGR+ A D IK++GG+ T AVS +T FL++G     GR     SK+++A  + T +IDEDGL  ++R S P    P+G         AAAP   PA A P+                          GA    G     PAG A                      AAA   +  Q+WVDKYKP +S  ++G+   V  L+ WL NWE  HL+GA APT
Sbjct:  365 VPPPNQGNKEAPRGHPDCLTGKTFVISGVLDSLGRDEATDYIKRHGGRTTQAVSGKTTFLLVGHHC--GR-----SKFRKARELGTKVIDEDGLIALIRASEPN--IPAG---------AAAP---PATAAPASQXXXXXXXXXXXXXXXXXXXXXXXAGA----GPSSARPAGVA-------------------RAPAAAGDASQYQLWVDKYKPRNSVELVGNNTLVDNLRAWLLNWEQVHLRGAAAPT 571
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: A0A8J4ARP4_9CHLO (Replication factor C subunit 1 n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ARP4_9CHLO)

HSP 1 Score: 124 bits (310), Expect = 8.920e-26
Identity = 95/250 (38.00%), Postives = 123/250 (49.20%), Query Frame = 1 
Query: 1036 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAAKPSQPKTAVVNPYASMQAATKTKAIVNPYGAAVIAGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNP-GQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            PPN  KKE P G   CL G+ FV++GVLDSL R  AEDLIK++GGKVT  VS +T FL++G   + GR     SKY+ A   KT ++DEDGLF +LR S P                          A P +P   +  P     A T   A  N +G+   A G G    G+ PG                  TGA++       Q+WVDKYKP +S  ++G+   V  LK W++ WE  H +GA APT
Sbjct:  316 PPNYRKKEAPRGHPDCLTGRTFVITGVLDSLMRPDAEDLIKRHGGKVTQNVSGKTSFLLVGH--NCGR-----SKYRMAKHHKTKVLDEDGLFALLRASAPF-------------------------APPERP---MATPTPGTAAPTSIPAS-NFFGSTAAAAGAGTG--GRKPG--DPVALNDAGVRSQPPITGASSGGGGSLNQLWVDKYKPANSFELVGNNTLVANLKQWIECWEQVHQRGAAAPT 525
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: A0A150GSV0_GONPE (Replication factor C subunit 1 n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GSV0_GONPE)

HSP 1 Score: 122 bits (306), Expect = 2.910e-25
Identity = 98/257 (38.13%), Postives = 131/257 (50.97%), Query Frame = 1 
Query: 1036 PPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQPSGGGSQDPSSAAAAPASKPAAA-KPSQPKTAVVNPYASMQAATKTKAIVNPYGAAVI-------AGGKGKAPAGKAPGAAXXXXXXXXXXXXXXXXTGAAAVCQNPGQMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT 1782
            PPN G K+VP G   CL G+ FV+SGVLDSL R  A+ LI+++GGKVT +VS RT FL++G   + GR     SKY+ A    T IIDEDGLF ++R S P   +       D    AAAPAS      + SQP +      A+ +A     +    +G+          +G +   P     GAA                 G +    N  Q+WVDKYKP +S  ++G+   V  LK WL++WEG HL+GA  PT
Sbjct:  360 PPNYGNKDVPRGHPDCLTGRTFVMSGVLDSLMRSDADALIRRHGGKVTQSVSGRTAFLLVGH--NCGR-----SKYRGAKQHGTKIIDEDGLFALIRASEPFAPK-------DQPPPAAAPASXXXXXXQXSQPSS-----QAASRAGPAAISATGFFGSGAXXXXXXXPSGSRAAPPPASLGGAA-----------------GGSGGQLN--QLWVDKYKPKNSVELVGNNTLVANLKQWLESWEGVHLRGAAPPT 578
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BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Match: A0A196S782_BLAHN (Replication factor C subunit 1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S782_BLAHN)

HSP 1 Score: 114 bits (285), Expect = 8.460e-23
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:  994 GGFRPAWRGGARLAPPNEGKKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRTHFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPE 1341
            G +RP W G  R  PP  G K +PVGK+ CL+G  FV++G+ +SL R+   +LI +YGG +  AVS +T +LV G  ++DGRP  EGSKY+ A   K  II ED L +M+R SNPE
Sbjct:  104 GAYRPKWLGAER-DPPKHGSKPIPVGKDGCLSGIIFVLTGLNESLNRDETIELITRYGGIIRSAVSGKTQYLVAGFEMEDGRPITEGSKYRAAKEKKVPIISEDDLLQMIRRSNPE 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8190.19541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LND0_ECTSI2.110e-12686.59Replication factor C subunit 1 n=2 Tax=Ectocarpus ... [more]
A0A2K3D450_CHLRE1.690e-3039.92Replication factor C subunit 1 n=2 Tax=Chlamydomon... [more]
A0A8J4D1N3_9CHLO2.280e-2840.08Replication factor C subunit 1 n=1 Tax=Volvox reti... [more]
D8UHI8_VOLCA2.590e-2838.65Replication factor C subunit 1 n=1 Tax=Volvox cart... [more]
A0A8J4GSG1_9CHLO2.950e-2840.08BRCT domain-containing protein n=5 Tax=Volvox reti... [more]
A0A835T5C5_CHLIN9.520e-2840.32Replication factor C subunit 1 n=1 Tax=Chlamydomon... [more]
A0A836BBT5_9CHLO1.660e-2638.25Replication factor C subunit 1 n=1 Tax=Chlamydomon... [more]
A0A8J4ARP4_9CHLO8.920e-2638.00Replication factor C subunit 1 n=1 Tax=Volvox afri... [more]
A0A150GSV0_GONPE2.910e-2538.13Replication factor C subunit 1 n=1 Tax=Gonium pect... [more]
A0A196S782_BLAHN8.460e-2349.14Replication factor C subunit 1 n=1 Tax=Blastocysti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8190contigEcto-sp13_S_contig8190:134..4875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score408.3
Seed ortholog evalue6.2e-111
Seed eggNOG ortholog2880.D8LND0
Model size1782
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0022616,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360,GO:1901576
Exons6
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
Cds size1782
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8190.19541.1prot_Ecto-sp13_S_contig8190.19541.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8190 134..4875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.6933153-CDS-Ecto-sp13_S_contig8190:133..3551681464090.6933153-CDS-Ecto-sp13_S_contig8190:133..355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8190 134..355 -
1681464090.7084556-CDS-Ecto-sp13_S_contig8190:689..8421681464090.7084556-CDS-Ecto-sp13_S_contig8190:689..842Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8190 690..842 -
1681464090.7186086-CDS-Ecto-sp13_S_contig8190:1257..14081681464090.7186086-CDS-Ecto-sp13_S_contig8190:1257..1408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8190 1258..1408 -
1681464090.7281103-CDS-Ecto-sp13_S_contig8190:1939..20341681464090.7281103-CDS-Ecto-sp13_S_contig8190:1939..2034Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8190 1940..2034 -
1681464090.737391-CDS-Ecto-sp13_S_contig8190:2440..34041681464090.737391-CDS-Ecto-sp13_S_contig8190:2440..3404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8190 2441..3404 -
1681464090.7469873-CDS-Ecto-sp13_S_contig8190:4678..48751681464090.7469873-CDS-Ecto-sp13_S_contig8190:4678..4875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8190 4679..4875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8190.19541.1

>prot_Ecto-sp13_S_contig8190.19541.1 ID=prot_Ecto-sp13_S_contig8190.19541.1|Name=mRNA_Ecto-sp13_S_contig8190.19541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=594bp
MDIRSFFGPSSGGAGGAAKPKTKPKTPVSASKKGGGQAKSPSKKATASSS
SSSPKSSSKGGVSKMTLESTSKTKASSKKRQGASSQAAAAAAAADDSDDD
VVEVTPQPAKKKKDNASSGSPAEAGPKAAGTGSITTRGTSSSSSSSSRKR
AAKSAVNYKEDDDDDGEGGGGDDDDDDEAFSGSDAKDEEGDKDDDDHDAD
EDVTSKSRKRKSGGSPAPKAARKAAAAAAASPNKASVKKKRAVVEEDEED
DDVQEVSSSKHFSSATTKKKTSAPGDGSSSRKTTTSSTVDLGGISSDEDD
GQEEEVAPTPPPKKKPAPASSSSSSAKKTPGGGFRPAWRGGARLAPPNEG
KKEVPVGKEQCLAGKAFVVSGVLDSLGREAAEDLIKQYGGKVTGAVSSRT
HFLVLGTVLDDGRPPEEGSKYKRAMVMKTTIIDEDGLFKMLRDSNPEGKQ
PSGGGSQDPSSAAAAPASKPAAAKPSQPKTAVVNPYASMQAATKTKAIVN
PYGAAVIAGGKGKAPAGKAPGAASSSSSSSSSKAARGAGTGAAAVCQNPG
QMWVDKYKPNSSSGVIGHAGQVKKLKVWLQNWEGWHLKGAKAPT
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mRNA from alignment at Ecto-sp13_S_contig8190:134..4875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8190.19541.1 ID=mRNA_Ecto-sp13_S_contig8190.19541.1|Name=mRNA_Ecto-sp13_S_contig8190.19541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4742bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8190:134..4875- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATACGGTCCTTCTTCGGCCCTTCCTCGGGAGGGGCAGGCGGTGC
AGCCAAACCGAAGACTAAGCCCAAGACACCGGTATCGGCGAGCAAGAAGG
GCGGTGGCCAGGCGAAGTCTCCGAGCAAGAAGGCCACCGCTAGCAGCAGC
AGCAGCAGCCCCAAGAGCAGCAGCAAGGGTGGTGTCAGCAAGATGACGTG
AGTCCTTGCCGCACACAGCAGCACGCCGTCTTCTTTACATGGGTGCCATG
AGTGTGTGCACGTCAATGGAAGGCGGCGGTTGGCGGCGACACAGCAGATC
TTCAAGTGTTGTGCATTCAAACCTCAATTGTTGTGCATTCAAACCTCTAT
ACTGCTGCTTTGGGCGCGGGGTGGATGGAGTTGGCGAGCAGCGGATCGAC
GCGAATTCGAGCCATCATGACCCATTCCCGCCGCCCTGCCATGTGTGCCC
CCTCCCCGCAACAGAACTGCCATCTGAACAACAATGAATTCGGCCTGTGA
CTCCTTGTTTCAACGAGTGTTCATCCTTTCTTATCTCGACTCCACAACCG
CAACAACAGGCATCAAACATGTTTGATATTTCAAAATCTTGAAATGTGTT
CGAGAGCGCGAGTGTTTGGTTGATTGTGCCGCCCCTTCACCACCCGTACT
CGCAGACAACCTTTGTTTACGTGGTGTCCGTCGAGAGGGTACTGCAGTAC
TTAGAGAGAAGAACGGTGTGCACGCACAATATATCTCGATGCGCTCCATC
GGCCTGCAACCGGGGTGCCACCTCTTTCTAGAGCAGTAGATCGCGACTTG
TGCACGGTCTGCGTCTTGACCCCCTTGCGTGAACCCGTGTTTAGGCATGG
CTGAGGAGAAAACGGTTTGGCAGACTCGAAATATGTCCAATACCCAGCCG
GTTTTCCTCCACTCACTGTCTAGACTCCTTCACATCCCGTCCGAACGTGG
GTATATCTCGAACGGTAATCTTTCTGTGTTTGTAATTATGTATCTTCCTA
ATAAAAATATCAGCGTTGCATCTACACCAATACAGCGTGTCTCGTCGAGC
ATCGAAACTGTGTTTTTCGTCTGTTTTATTTTGCTGCATCGTTCGGCATC
TATTGTACGTTTTGGACGCACCAACCGGGGTTGCAATGGAGGAAAACCAC
ACCGCTTGTTTGTCGTGTTTTTTGCCCACCTTCTCTTCTCCTGCGGCACA
GCAGTGTAGCTCCCGCACTCATGTATGAACCTCTAGTTTCGCCCCCAAGG
CTGAAAGGTTTCTAGTCCCTATTAATAGGTTATTCGACCAATGGCCGCCT
TATACACAGGTTTAGTGTAAGGGATTCTATGCCGACCCTACAAAAATGGT
GCTCAAGTTCTTTTACAGGTGGGGGCCCAAGTTTTTTCATCCTCACTACC
AAGTTGATCGGTACGGGCGCGAACAGTAGCTCAGCAATAATTGTTATCCC
TTCGGCGGCCGCACCCCTCAGGTTGGAGAGCACCTCCAAGACCAAGGCTT
CTTCGAAAAAGAGGCAGGGCGCGTCCTCCCAAGCAGCAGCAGCAGCAGCA
GCAGCAGACGACAGCGACGACGACGTGGTCGAAGTGACCCCGCAGCCCGC
CAAAAAGAAGAAGGACAACGCCTCCTCGGGTTCACCCGCAGAGGCGGGTC
CGAAAGCAGCAGGAACGGGCTCGATAACAACCAGGGGTACTAGCAGCAGC
AGCAGCAGCAGCAGCAGGAAGAGAGCGGCGAAGTCGGCCGTGAACTACAA
GGAAGACGATGATGATGACGGTGAGGGAGGGGGGGGTGACGATGATGACG
ACGACGAAGCCTTCAGCGGTTCCGACGCGAAAGACGAGGAAGGCGATAAG
GACGACGACGACCATGACGCCGACGAGGACGTCACGTCCAAGTCCCGCAA
GCGGAAGTCAGGGGGCTCGCCGGCGCCTAAGGCGGCGCGTAAGGCGGCGG
CGGCGGCGGCAGCGTCGCCGAACAAGGCCAGCGTGAAGAAGAAGAGGGCG
GTTGTGGAGGAGGATGAGGAGGATGATGACGTACAGGAGGTCAGCAGCTC
CAAGCATTTCTCTTCGGCGACAACCAAGAAGAAGACGTCGGCACCGGGCG
ACGGCAGCAGCAGCAGGAAAACGACAACGTCGTCCACGGTAGACCTTGGC
GGGATCTCCAGCGACGAAGACGACGGACAAGAAGAAGAGGTTGCGCCCAC
CCCGCCGCCGAAAAAGAAGCCGGCGCCGGCTAGCAGCAGCAGCAGCAGCG
CGAAGAAGACGCCCGGCGGCGGCTTTCGGCCGGCGTGGCGGGGCGGGGCG
CGCCTCGCGCCTCCGAACGAGGGTAAGAAGGAGGTACCCGTTGGGAAGGA
GCAGTGCCTTGCGGGGAAGGCGTTCGTGGTGAGCGGGGTGCTGGACTCGC
TCGGGAGGGAGGCGGCCGAGGATCTGATCAAGCAGGTACGCAAGCGCGTA
CCAACCGTGCTCCATGTACAAGTGGAATGTAAACTAACCCCATGTTTTTT
TTCACGTTTTGTAGTTAGCAATTTTCTTTTCTTTGGATTTCCTCTCCGTG
CAGGTGTCTTTTTTACGGATTTCGTACAAGAATGGACACCGTCAAGTCTA
GGCCGAATGTTTGGGGCCTAGGCCCCGGGGAAAGTGGAGAAAGCGGACCT
TCTGACACGAGTTTTCTCCGCCGACGAGCTCAAGCCCGTCGATCACCCCA
CCCCTCCAAGAGCGATTCCACGTCCAAAAGAACCCAACCGTAGGTGTCTG
ATATTGTATTTTTTTCCCCTGATGCCCACCCCCTTTCCTCGTCCCCCGTG
GCGGCCTGTCTCTCCCCCGCCCTTCTTTTCCCTCCGAACAGTACGGTGGC
AAGGTGACCGGCGCGGTGAGCAGCAGGACTCACTTCCTGGTGCTGGGTAC
GGTGCTGGATGACGGTCGGCCGCCGGAAGAGGGCAGGTACGCGGCGCTGC
GGCCGTAGCCTGGCGTTTTGAGGGCGCGTGATGGGTGTGGGATACCACCC
ACGAGCATCGCGGGCGGTGGGGGGGGGTGTGATGTGTCTCGTGGTTGTGG
TTTGGATGATGGGGGGTCGGAGGGGGTGTGCTCGTAGCCGTGCATGTCGT
AGTCGTTGGACCATTGACCTCGCATCCCTACAAGGCCGGGACGGAGCAAG
CAGGATTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGT
GAGGTATTGGGCGAATCGCGGGGGGATGGATTTTGTCGCTGTTGCTGTTG
GTAAACCGATGCGGCGATCTGCGCGACGAGAGGACAGAAGCAATGGAACC
CATCGTACCATGCCTGTTTGTTGGTACCGCCCACTGCGGCAGTTTGGCAG
TAAACCTCACGGCGAGATTGATTCTAAGGCAACTGCGTCGCGATCGATCG
ACGTGAATGTGATGTAACCTTTCTTGGCCCGTGTCGACTCGGCGCTGGCT
TTGTGAACTGCTCGCAGCAAGTACAAGAGGGCCATGGTGATGAAGACAAC
AATCATCGACGAGGACGGCCTGTTCAAGATGCTACGAGACTCCAACCCCG
AGGGGAAGCAGCCGTCGGGGGGTGGGAGCCAGGACCCTTCGTCGGCAGCA
GCGGCTCCGGCCAGCAAGGTGGGGTTCGCGTTGTTGTTGTTGTTGTTGTT
TTTGTTGCTGTCGTAGCTGTTGGTGGTGGTGATGGTGCTGTTGTTGCTGC
TGTGGTTGTTGTTGTTGCTCGCTGCCGCTGTCGTGTTTGTGTTGCTGTTG
CGGCTGTTGTTGCTGTTGTTGTTGGTGGCTGCTGCTGTTGCTCTTGTTGT
TGCTGATGCTGTGTTGTTGCTGTTTCTATTTTTTTGTTGTCGTGGCCTGT
TGTTGTTGCTGTTGTTGCTGTTGTTGTTGTTGCTGTTGCTGTTGCTGTTG
TCATTGCTGTTGCTCTTCTTCTTGTTGTTGTGGTCGTGGTTAAGAAGAAG
CCCCCAACTACTCCTTATCCTAAGCCCCCCCCCAACCACACCACCCCCCC
CCGCCCCTCCGTGTCTCGCTGACGCAATTGAAGCCGGCCGCGGCGAAGCC
TTCTCAGCCCAAAACAGCGGTCGTGAACCCGTACGCCTCCATGCAGGCGG
CCACAAAGACGAAAGCCATCGTTAACCCTTACGGTGCTGCTGTCATCGCC
GGTGGCAAGGGGAAGGCGCCGGCTGGGAAGGCTCCGGTGAGCTACGTAGC
TGTTACATGACACCTGTGGTTTGCAAGCAGGGGGGGCGCTTGATCGGGGA
GTTCGTTCGTCTGGGATTTGGTTGGTGGTATTTTACTCTTCGTACGGCGT
GTACACGTCTCGACGCTTTACTTTTGTGTCTACGGCGTGTTCATGTCTCG
ACGACTCTGTTGCGCACAGGGGTTGCCTGACACAACTACACTTCAGGGTC
AGTTTTTTTTTTGCGATAAACCTGTACAACAACAGAAGTCTGGCCACCCG
TTTGCCGCCGAAACAGAGTTCCGAAACACATTTATTGCCTTAGTTTCCAA
TCTCCACCGACTTCCCGCAGGGTGCGGCTTCCTCCTCCTCCTCCTCCTCC
TCCTCTAAGGCTGCGCGCGGGGCAGGGACGGGGGCGGCGGCTGTCTGCCA
GAACCCCGGCCAGATGTGGGTGGACAAGTACAAGCCGAATAGCTCGTCGG
GGGTCATCGGGCACGCCGGGCAGGTGAAGAAGCTCAAGGTCTGGCTGCAG
AACTGGGAAGGGTGGCACCTCAAAGGCGCCAAGGCTCCGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8190:134..4875-

>mRNA_Ecto-sp13_S_contig8190.19541.1 ID=mRNA_Ecto-sp13_S_contig8190.19541.1|Name=mRNA_Ecto-sp13_S_contig8190.19541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1782bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8190:134..4875- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATACGGTCCTTCTTCGGCCCTTCCTCGGGAGGGGCAGGCGGTGC
AGCCAAACCGAAGACTAAGCCCAAGACACCGGTATCGGCGAGCAAGAAGG
GCGGTGGCCAGGCGAAGTCTCCGAGCAAGAAGGCCACCGCTAGCAGCAGC
AGCAGCAGCCCCAAGAGCAGCAGCAAGGGTGGTGTCAGCAAGATGACGTT
GGAGAGCACCTCCAAGACCAAGGCTTCTTCGAAAAAGAGGCAGGGCGCGT
CCTCCCAAGCAGCAGCAGCAGCAGCAGCAGCAGACGACAGCGACGACGAC
GTGGTCGAAGTGACCCCGCAGCCCGCCAAAAAGAAGAAGGACAACGCCTC
CTCGGGTTCACCCGCAGAGGCGGGTCCGAAAGCAGCAGGAACGGGCTCGA
TAACAACCAGGGGTACTAGCAGCAGCAGCAGCAGCAGCAGCAGGAAGAGA
GCGGCGAAGTCGGCCGTGAACTACAAGGAAGACGATGATGATGACGGTGA
GGGAGGGGGGGGTGACGATGATGACGACGACGAAGCCTTCAGCGGTTCCG
ACGCGAAAGACGAGGAAGGCGATAAGGACGACGACGACCATGACGCCGAC
GAGGACGTCACGTCCAAGTCCCGCAAGCGGAAGTCAGGGGGCTCGCCGGC
GCCTAAGGCGGCGCGTAAGGCGGCGGCGGCGGCGGCAGCGTCGCCGAACA
AGGCCAGCGTGAAGAAGAAGAGGGCGGTTGTGGAGGAGGATGAGGAGGAT
GATGACGTACAGGAGGTCAGCAGCTCCAAGCATTTCTCTTCGGCGACAAC
CAAGAAGAAGACGTCGGCACCGGGCGACGGCAGCAGCAGCAGGAAAACGA
CAACGTCGTCCACGGTAGACCTTGGCGGGATCTCCAGCGACGAAGACGAC
GGACAAGAAGAAGAGGTTGCGCCCACCCCGCCGCCGAAAAAGAAGCCGGC
GCCGGCTAGCAGCAGCAGCAGCAGCGCGAAGAAGACGCCCGGCGGCGGCT
TTCGGCCGGCGTGGCGGGGCGGGGCGCGCCTCGCGCCTCCGAACGAGGGT
AAGAAGGAGGTACCCGTTGGGAAGGAGCAGTGCCTTGCGGGGAAGGCGTT
CGTGGTGAGCGGGGTGCTGGACTCGCTCGGGAGGGAGGCGGCCGAGGATC
TGATCAAGCAGTACGGTGGCAAGGTGACCGGCGCGGTGAGCAGCAGGACT
CACTTCCTGGTGCTGGGTACGGTGCTGGATGACGGTCGGCCGCCGGAAGA
GGGCAGCAAGTACAAGAGGGCCATGGTGATGAAGACAACAATCATCGACG
AGGACGGCCTGTTCAAGATGCTACGAGACTCCAACCCCGAGGGGAAGCAG
CCGTCGGGGGGTGGGAGCCAGGACCCTTCGTCGGCAGCAGCGGCTCCGGC
CAGCAAGCCGGCCGCGGCGAAGCCTTCTCAGCCCAAAACAGCGGTCGTGA
ACCCGTACGCCTCCATGCAGGCGGCCACAAAGACGAAAGCCATCGTTAAC
CCTTACGGTGCTGCTGTCATCGCCGGTGGCAAGGGGAAGGCGCCGGCTGG
GAAGGCTCCGGGTGCGGCTTCCTCCTCCTCCTCCTCCTCCTCCTCTAAGG
CTGCGCGCGGGGCAGGGACGGGGGCGGCGGCTGTCTGCCAGAACCCCGGC
CAGATGTGGGTGGACAAGTACAAGCCGAATAGCTCGTCGGGGGTCATCGG
GCACGCCGGGCAGGTGAAGAAGCTCAAGGTCTGGCTGCAGAACTGGGAAG
GGTGGCACCTCAAAGGCGCCAAGGCTCCGACG
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