mRNA_Ecto-sp13_S_contig8189.19538.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8189.19538.1
Unique NamemRNA_Ecto-sp13_S_contig8189.19538.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: D7G3J3_ECTSI (Conserved C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J3_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 7.590e-101
Identity = 224/269 (83.27%), Postives = 226/269 (84.01%), Query Frame = 1
Query:    1 MPPTLTCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAAALGSDAPKADFQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 807
            MP TLTCTACAV FSTS+AHK HYKLDWHRYNLRRKVAGLAPVDQG FDR LAAALG DAPKADFQARCLECRKSFRSEGLYKQHLQSKKHKEA KR            SPTD XXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXPMG CVCIFCD VSPSFEENCAHMLR HGFFIPDVEYLQDPEGL+AYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ
Sbjct:    1 MPSTLTCTACAVAFSTSEAHKAHYKLDWHRYNLRRKVAGLAPVDQGGFDRLLAAALGPDAPKADFQARCLECRKSFRSEGLYKQHLQSKKHKEAVKRAXXXXXXXXXXXSPTDGXXXXXXXXXXXXXXXXXXXXXXVLQKSGNGTRXXXXXXXXXXXXXXXXXXXXXGSPQKDAMSQXXXXXXXXXXXXXXXXPMGPCVCIFCDFVSPSFEENCAHMLRHHGFFIPDVEYLQDPEGLVAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 269          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: A0A835YRS1_9STRA (C2H2 type zinc-finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRS1_9STRA)

HSP 1 Score: 187 bits (475), Expect = 8.250e-52
Identity = 163/273 (59.71%), Postives = 190/273 (69.60%), Query Frame = 1
Query:   16 TCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAAALGSDAPKADFQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------PMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 807
            TCTACA TF +S+  + HYKLDWHRYNL+RKVA LAPV + DF+RRLAA  G+   K+D++  C ECRKSF SE LY QHL++KKH++    +AA AK A TAASP                            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         P+G+ +C+FC+  +    +NCAHML  HGFFIPD EYL D  GL+AY  EKVKLG +CL CNG+G+ F  +RAVQQ
Sbjct:  103 TCTACASTFQSSEEQRAHYKLDWHRYNLKRKVASLAPVSKEDFERRLAAIAGAAVTKSDYRGHCKECRKSFGSEKLYAQHLETKKHQQV---VAANAKKAITAASPAAAAGGSEGPILQDTLEADMPAPEVSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPEPPLGAHICVFCNKEARDVADNCAHMLAAHGFFIPDAEYLVDRAGLVAYCGEKVKLGRLCLVCNGRGRGFRGWRAVQQ 372          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: T1IQQ3_STRMM (Uncharacterized protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IQQ3_STRMM)

HSP 1 Score: 137 bits (346), Expect = 6.800e-35
Identity = 96/266 (36.09%), Postives = 126/266 (47.37%), Query Frame = 1
Query:   16 TCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAAALGSDA-PKADFQARCLECRKSFRSEGLYKQHLQSKKHKE-AAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 807
            TC AC   FS ++ H+ HYK DWHRYNL+RKVA L P+D+ +F++RL   L   A PKA+  + C  C+K F S   ++ HL+SKKH E AAK+    A+P  T  +  +     XXXXXX                                                                     P+    C+FC   S +  EN  HM  +H FF+PDVEYL D EGLI Y+ EKV  G +CL+CN KGK FHT ++VQ+
Sbjct:    4 TCVACQSRFSLAEKHRDHYKTDWHRYNLKRKVAELPPIDEKEFNQRLLTHLERKAEPKAEGISICNVCKKHFSSTLTFENHLKSKKHVELAAKKPKINAEPKKTLDTAENIEIDDXXXXXXEWEDLADEP------------------------------------------------------------PLTVDECLFCSFKSDNVIENLKHMTTEHSFFVPDVEYLADLEGLIKYLAEKVSCGNMCLWCNEKGKAFHTTKSVQR 209          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: A0A1Y1YP14_9FUNG (Uncharacterized protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YP14_9FUNG)

HSP 1 Score: 135 bits (341), Expect = 7.340e-34
Identity = 87/267 (32.58%), Postives = 110/267 (41.20%), Query Frame = 1
Query:    7 PTLTCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAAALGSDAPK-ADFQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQ 804
            P  TC AC V F T +  + HY+ DWHRYNL+RKVA L P+    F  ++ A     A + A F+  C+ C+K+F SE  Y  H+QSKKHKE        AK A   A P                                                                                        C+FC   S SFEEN  HM + H FFIPD+EYL D +GL  Y+ EK+ +  ICLYCNGKG+T+ T  AV+
Sbjct:   12 PLFTCLACHVAFRTLEHQRNHYRTDWHRYNLKRKVAELPPITAEVFAEKVLAQQAQTAQEGAAFKGECVACKKTFASENAYTNHIQSKKHKETE------AKFAKNPAKPKKVDSETPVEKELTIEQQLDRVTDETELLQLLDKKKEQAVRLTPED------------------------------------------CLFCTQKSQSFEENVDHMTKTHSFFIPDIEYLTDIQGLFKYLGEKISVANICLYCNGKGRTYRTLEAVR 230          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: A0A8H7UES7_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UES7_9FUNG)

HSP 1 Score: 134 bits (337), Expect = 3.200e-33
Identity = 83/271 (30.63%), Postives = 114/271 (42.07%), Query Frame = 1
Query:   16 TCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAAA-----LGSDAPKAD---FQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQ 804
            TC AC V F + +  + HY+ DWHRYNL+RKVA L P+    FD +L          +D  KA+   F   C  CRK+F ++G +  H+QSKKHKEA  + A  ++P  T     D                                                                                 +    C+FC   S +FE++ AHM + H FFIPD+EYL D  GLI Y+ EK+ +G +CLYCNGKG+   +  AV+
Sbjct:   13 TCMACQVAFRSGEGQRNHYRSDWHRYNLKRKVADLPPITLAQFDSKLQGTSIELTTKTDEKKAEQEAFSGECEACRKTFGTQGSFNSHIQSKKHKEAVAKAA--SRPQKTVKETDDEKAATSTNLVVDENMSDGEVNEIIDKRISEAVR------------------------------------------------LAETDCLFCTHTSDTFEDSIAHMTKVHSFFIPDIEYLSDLRGLIKYLGEKISVGNVCLYCNGKGRAIRSLEAVR 233          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: A0A168MV26_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168MV26_ABSGL)

HSP 1 Score: 134 bits (337), Expect = 3.260e-33
Identity = 84/267 (31.46%), Postives = 111/267 (41.57%), Query Frame = 1
Query:   16 TCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAAALGSDAPKAD---FQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 807
            TC +C V F T+DA + HY+ DWHRYNL+RKVA L PVD   F ++  A   +   + D   F+  C  CRKSF +E  Y  H+QSKKHKE   +     K +     P                                                                                        C+FC   S S E+N  HM + H FFIPD+EYL D +GLI Y+ EK+ +G +CL+CNGKGK F +  AV++
Sbjct:   13 TCISCKVAFGTADAQRLHYRSDWHRYNLKRKVAELPPVDLAQFQQKDQAQKAATQKQEDTPVFKGYCDACRKSFGTENQYNNHIQSKKHKETQAKYVPRPKKSVDEDQPDQQKQQSQEQQVVDMTFTEETTEDEILSKIDAKIKAAPRLTEHD--------------------------------------------CLFCSTTSDSLEDNMTHMTKVHSFFIPDIEYLVDLQGLIRYLGEKISVGNVCLFCNGKGKGFLSMDAVRK 235          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: K3WIE7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIE7_GLOUD)

HSP 1 Score: 135 bits (339), Expect = 4.060e-33
Identity = 91/284 (32.04%), Postives = 115/284 (40.49%), Query Frame = 1
Query:   16 TCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAA-------ALGSDAPKADFQAR-------------CLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 807
            TCTAC + F++ D  K H++ DWHRYNL+RKV  L PV +  FD R+         AL +D      Q R             C+ C K+F +   Y  HL SKKH    K+   VA    T     D                                                                                P+    CIFC   +  F+ N +HML++HGFFIPDVE+L D EGL+ Y+ EKVKLG  CLYCNGKGKTF  Y+ VQ+
Sbjct:    3 TCTACRLEFASFDEQKEHFRSDWHRYNLKRKVVELPPVSEEQFDFRMQKVLQDKQKALENDPKHKQMQKREEMKKSGVKTMTKCVACNKTFTTSNAYDNHLTSKKHLANIKKNPTVADVTETIQKKLDIVSLDGSTEDEDSSDSNNPATTMTDEEVAVSLEEYKKQI-----------------------------------------PLTKEDCIFCAHKAADFDANLSHMLKEHGFFIPDVEFLVDAEGLVDYLAEKVKLGNFCLYCNGKGKTFRNYQDVQK 245          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: A0A433QNK8_9FUNG (C2H2 type zinc-finger-domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QNK8_9FUNG)

HSP 1 Score: 134 bits (336), Expect = 7.590e-33
Identity = 108/269 (40.15%), Postives = 137/269 (50.93%), Query Frame = 1
Query:   16 TCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAAALGSD---APKADFQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVA--KPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 807
            TC AC V F T++  + HY+ DWHRYNL+RKVA L PV    F +++ A    D   A K  FQA C  C K + +E  +  HLQSKKHKE  ++ A +A  +    A++PT           XXXXXXXXXXXXXXXXXXXXXX                                                      C+FC   S +F+ N  HM + H FFIPD+EYL D  GLI Y+ EKV +G +CLYCNGKG+   + +AVQ+
Sbjct:   24 TCLACHVAFHTAENQRNHYRTDWHRYNLKRKVAELPPVSAEQFAQKILAQQAKDKEQAGKNSFQAECEVCSKVYSTENAHTNHLQSKKHKETEQKAAELAARRSLQQASAPTTPTPKDDASSIXXXXXXXXXXXXXXXXXXXXXXLSLIDKKIETSARLTDQD------------------------------------CLFCSARSATFDANMTHMTKAHSFFIPDLEYLVDLAGLIRYLGEKVSVGNVCLYCNGKGRGMRSLKAVQK 256          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: UPI001B887A3A (zinc finger protein 622-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887A3A)

HSP 1 Score: 133 bits (334), Expect = 9.130e-33
Identity = 83/264 (31.44%), Postives = 115/264 (43.56%), Query Frame = 1
Query:   19 CTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRR-LAAALGSDAPKADFQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 807
            C  C V F+ ++ H++HYK DWHRYNL+R+VA +APV   +F +R LA     D  + D  + C  C K F ++  Y+ H+QSKKHKEA K+  A  +                                                                                           +G   C+FC  +S S EEN  HM  +H FFIPD E++ D EGLI Y+ EKV +G +CL+CN KGK+FH+ ++VQQ
Sbjct:    6 CITCWVAFADAELHRSHYKTDWHRYNLKRRVAEMAPVTAENFQQRVLAQRTLIDEEEKDTSSACAVCGKHFSTKSQYENHVQSKKHKEAEKKHQAKVE-----------------------REILQKNKKNKEEGLVGSGDPTSSDKNTVNTELKSKMDSVNEEKKKTAEEMEVEEDDGSDAESWDENELGIEECLFCSHISSSMEENVDHMTVKHSFFIPDAEFVSDLEGLITYLGEKVGVGRVCLWCNEKGKSFHSTKSVQQ 246          
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Match: A0A197JZ34_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JZ34_9FUNG)

HSP 1 Score: 133 bits (335), Expect = 1.020e-32
Identity = 83/267 (31.09%), Postives = 111/267 (41.57%), Query Frame = 1
Query:   16 TCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDRRLAAALGSDAPK---ADFQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAAVAKPAGTAASPTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMGSCVCIFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFICLYCNGKGKTFHTYRAVQQ 807
            TC AC V F T+D  + HY+ DWHRYNL+RK+  L PV    F +++ A    DA     AD  + C  CRKS+ S+  Y+ HL SKKHKE   ++ A  +P      P                                                                                        C+FC   + +FE N  HM + HGFFIPD+EY+ D EGLI Y+ EKV +G ICL+CNGKG+   +  AV++
Sbjct:   27 TCLACHVAFKTADIQREHYRSDWHRYNLKRKMVELPPVSADMFAQKVTAQKQKDADDQAAADDSSECKTCRKSYSSKNAYENHLASKKHKETEAKLKANPRPVAKVEKPVKSDVESITSKMTVDLSVTDETTQEELEEIMDKKIETAVRLELTD-------------------------------------------CLFCTEKAETFESNIEHMTKYHGFFIPDLEYIVDLEGLIKYLGEKVSVGNICLHCNGKGRQIKSLEAVRK 250          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8189.19538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3J3_ECTSI7.590e-10183.27Conserved C2H2 zinc finger protein n=2 Tax=Ectocar... [more]
A0A835YRS1_9STRA8.250e-5259.71C2H2 type zinc-finger-domain-containing protein n=... [more]
T1IQQ3_STRMM6.800e-3536.09Uncharacterized protein n=1 Tax=Strigamia maritima... [more]
A0A1Y1YP14_9FUNG7.340e-3432.58Uncharacterized protein n=2 Tax=Basidiobolus meris... [more]
A0A8H7UES7_9FUNG3.200e-3330.63Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A168MV26_ABSGL3.260e-3331.46Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
K3WIE7_GLOUD4.060e-3332.04Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A433QNK8_9FUNG7.590e-3340.15C2H2 type zinc-finger-domain-containing protein n=... [more]
UPI001B887A3A9.130e-3331.44zinc finger protein 622-like n=1 Tax=Gigantopelta ... [more]
A0A197JZ34_9FUNG1.020e-3231.09Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8189contigEcto-sp13_S_contig8189:55..2252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score316.2
Seed ortholog evalue1.4e-83
Seed eggNOG ortholog2880.D7G3J3
Model size807
KEGG koko:K14816
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0015934,GO:0019219,GO:0019222,GO:0022613,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0031323,GO:0031326,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071840,GO:0080090,GO:0140110,GO:1903506,GO:1990904,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG2785@1,KOG2785@2759
Cds size807
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.4421046-CDS-Ecto-sp13_S_contig8189:54..1961681464090.4421046-CDS-Ecto-sp13_S_contig8189:54..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8189 55..196 -
1681464090.4540343-CDS-Ecto-sp13_S_contig8189:1004..14271681464090.4540343-CDS-Ecto-sp13_S_contig8189:1004..1427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8189 1005..1427 -
1681464090.464768-CDS-Ecto-sp13_S_contig8189:2010..22521681464090.464768-CDS-Ecto-sp13_S_contig8189:2010..2252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8189 2011..2252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8189.19538.1prot_Ecto-sp13_S_contig8189.19538.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8189 55..2252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8189.19538.1

>prot_Ecto-sp13_S_contig8189.19538.1 ID=prot_Ecto-sp13_S_contig8189.19538.1|Name=mRNA_Ecto-sp13_S_contig8189.19538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
MPPTLTCTACAVTFSTSDAHKTHYKLDWHRYNLRRKVAGLAPVDQGDFDR
RLAAALGSDAPKADFQARCLECRKSFRSEGLYKQHLQSKKHKEAAKRIAA
VAKPAGTAASPTDDAGGGAAASSEPAGVGNDDEAAVLQERGNRTSGAGAS
SAVAAAALPSERGCCGSGSPEKGAMSKGEEKEEEEEEEELAPPPMGSCVC
IFCDLVSPSFEENCAHMLRQHGFFIPDVEYLQDPEGLIAYVEEKVKLGFI
CLYCNGKGKTFHTYRAVQQ
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mRNA from alignment at Ecto-sp13_S_contig8189:55..2252-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8189.19538.1 ID=mRNA_Ecto-sp13_S_contig8189.19538.1|Name=mRNA_Ecto-sp13_S_contig8189.19538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8189:55..2252- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCCCACGTTAACCTGCACCGCGTGCGCAGTCACGTTCTCGACGTC GGATGCGCACAAGACCCACTACAAGCTCGACTGGCACAGGTATAACTTGC GGCGAAAAGTCGCCGGGCTTGCACCGGTGGATCAGGGCGACTTCGACCGA CGCCTCGCGGCCGCCCTTGGGTCGGACGCCCCTAAGGCTGACTTCCAAGC GAGATGTTTGGAATGCCGCAAGAGCTTCAGGAGTGAAGGCCTGTGAGTAC ATGTCAGCAAGCCTTCCTTGCTATATGGTATGGCTGAGGCCCTCTTGAGC TACTATCGCGGGAAGCACGTTGCCAGTGGTGTGTGAAGAGGGGAAGAAGT GAAGAGGGGAGGAGAGCCGGATGTGGTGGCCGCGGGCCGTGTGACGCTCT CGTGAAGCCAGACCTCGCCATGTATATAGCGCAAACCATCGTTTTGTTGA TTGTCGATCGTCACACGATGTGAGTTATTTTTACTTCTCTGCCTACTAAG CCTTACCCTGATTCCGTCAGGTCATCAGGCGGTGTTCTAGACCCTCGCCT ACACGGACGATGCCATTGTTGCCGAAGCGAGAGAGAGCATTCCGTTGGTC CCAAATGGCCCTTCGCCACACTTAAGCATTGAAATGCTGGATCTGCCCCC CCCCGTGCTGTCCCACTTGCTATGCCATGAAAGTATTCTAGTCCCCGCGG TTCTCGAAGCGGACAGTTGAGTAAGGCTTCGCGCTGGTTTTGGTCGTCCG CCGCCCAACTTGCATACAAAATAAGCGTCTTCTGCGCTATCCTCCCGCCC ACGCTTACATATGATAACCCAACAGCTACAAGCAGCACCTCCAGTCCAAG AAGCACAAGGAAGCAGCAAAGCGTATAGCAGCGGTAGCGAAACCGGCAGG GACGGCAGCATCGCCTACCGATGATGCGGGTGGGGGCGCTGCCGCTTCCT CTGAACCCGCAGGCGTTGGTAACGACGACGAGGCTGCTGTTCTTCAAGAA AGAGGCAATCGCACTAGCGGTGCCGGGGCTTCTTCTGCGGTTGCGGCTGC TGCTTTGCCCTCGGAGAGGGGGTGTTGTGGCAGTGGTAGTCCCGAAAAGG GTGCGATGTCAAAAGGGGAGGAGAAAGAGGAAGAGGAGGAGGAGGAAGAG CTGGCACCACCCCCGATGGGTTCGTGCGTGTGCATCTTTTGCGACTTGGT GTCGCCGAGCTTCGAAGAGAACTGTGCCCACATGCTACGGCAGCACGGGT AAGTCGGGACGAGGAGATATTTCGACTTTTGTTCAACGGGGGTGCAAGGT GGCCATGTCAAGGCTGGCGCCAATGTTCAATGTAGTGTGCGTCGGTGAAG TCGCTACGCCATCGTATTCTCTGCCGTCTTCCTCCGAAACCCCGACGGAA AATATGGCGGCGTAGTTGAAGACCCGGCTTGGAAATCATTCGTAAGAAAG TCGTTGGGCGGTCTCACGACACTCTCGAGCACCAGCAGCATTTTTTGTTC ATCGTGTGTTTTTCCTTCCATGGGTGTTTCGAACCCAAGTCGGACGAAGA CATGCCAGTGGTCGCCCGCATGATATTTTTTGAAAGCCCGTGGCTGCCCC GTCTCAGCGAGACGCTTGTGTACTGTACCGGCGGATGGTAGCTCGTCCGG TCTGGCTTCTCGACTTTGAACAGGACTTGACCTGAAGTGTCACGGCTCTG GTGAGCCACCATCATTTCAATGTTAAAGGTGGCTTCCCAAAGCCGTGGCA CTGCAATCAAATCCCGTCGCTAGTCGACAAGCCAGACCGGACGAGCTACC ATCCGCCGATACACAACCCCTTCGCTGAGTATCGGCGTTCTTGCGACGAG AGGGAAGCTTTTGGATGAGTGACGAAATGCATGTTCATGTTTCGCTTGAT ATGGAAGCCTTGAGGGGGGAGGCCAAAAGGGTTTCGCGCAATTTCTTGCA ACGATAACCTTTGCGGTGTCACAGCATGGTAGGGTAATAGTGCCTCTATA CTGCCTGACTGCAAACGAGCGCTGACCCGTTCGTTCCTGTACAATTTTTC CCCCAGATTTTTCATCCCGGACGTGGAGTACTTGCAGGACCCGGAAGGGT TGATCGCATACGTGGAGGAGAAGGTGAAGCTGGGATTCATCTGCCTCTAT TGCAACGGGAAGGGAAAGACTTTCCACACCTACCGGGCGGTGCAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8189:55..2252-

>mRNA_Ecto-sp13_S_contig8189.19538.1 ID=mRNA_Ecto-sp13_S_contig8189.19538.1|Name=mRNA_Ecto-sp13_S_contig8189.19538.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8189:55..2252- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCCCACGTTAACCTGCACCGCGTGCGCAGTCACGTTCTCGACGTC
GGATGCGCACAAGACCCACTACAAGCTCGACTGGCACAGGTATAACTTGC
GGCGAAAAGTCGCCGGGCTTGCACCGGTGGATCAGGGCGACTTCGACCGA
CGCCTCGCGGCCGCCCTTGGGTCGGACGCCCCTAAGGCTGACTTCCAAGC
GAGATGTTTGGAATGCCGCAAGAGCTTCAGGAGTGAAGGCCTCTACAAGC
AGCACCTCCAGTCCAAGAAGCACAAGGAAGCAGCAAAGCGTATAGCAGCG
GTAGCGAAACCGGCAGGGACGGCAGCATCGCCTACCGATGATGCGGGTGG
GGGCGCTGCCGCTTCCTCTGAACCCGCAGGCGTTGGTAACGACGACGAGG
CTGCTGTTCTTCAAGAAAGAGGCAATCGCACTAGCGGTGCCGGGGCTTCT
TCTGCGGTTGCGGCTGCTGCTTTGCCCTCGGAGAGGGGGTGTTGTGGCAG
TGGTAGTCCCGAAAAGGGTGCGATGTCAAAAGGGGAGGAGAAAGAGGAAG
AGGAGGAGGAGGAAGAGCTGGCACCACCCCCGATGGGTTCGTGCGTGTGC
ATCTTTTGCGACTTGGTGTCGCCGAGCTTCGAAGAGAACTGTGCCCACAT
GCTACGGCAGCACGGATTTTTCATCCCGGACGTGGAGTACTTGCAGGACC
CGGAAGGGTTGATCGCATACGTGGAGGAGAAGGTGAAGCTGGGATTCATC
TGCCTCTATTGCAACGGGAAGGGAAAGACTTTCCACACCTACCGGGCGGT
GCAGCAG
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