mRNA_Ecto-sp13_S_contig81844.19535.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81844.19535.1
Unique NamemRNA_Ecto-sp13_S_contig81844.19535.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81844.19535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81844contigEcto-sp13_S_contig81844:22..255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size208
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size111
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.2200658-UTR-Ecto-sp13_S_contig81844:21..1041681464090.2200658-UTR-Ecto-sp13_S_contig81844:21..104Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig81844 22..104 +
1681464090.2623427-UTR-Ecto-sp13_S_contig81844:241..2551681464090.2623427-UTR-Ecto-sp13_S_contig81844:241..255Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig81844 242..255 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464090.2346363-CDS-Ecto-sp13_S_contig81844:104..1061681464090.2346363-CDS-Ecto-sp13_S_contig81844:104..106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81844 105..106 +
1681464090.2460556-CDS-Ecto-sp13_S_contig81844:132..2411681464090.2460556-CDS-Ecto-sp13_S_contig81844:132..241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81844 133..241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81844.19535.1prot_Ecto-sp13_S_contig81844.19535.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81844 105..241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81844.19535.1

>prot_Ecto-sp13_S_contig81844.19535.1 ID=prot_Ecto-sp13_S_contig81844.19535.1|Name=mRNA_Ecto-sp13_S_contig81844.19535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
MCVPCDRYRAYVGDLFMFARVFEGTCVIGVSLPEVL*
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mRNA from alignment at Ecto-sp13_S_contig81844:22..255+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81844.19535.1 ID=mRNA_Ecto-sp13_S_contig81844.19535.1|Name=mRNA_Ecto-sp13_S_contig81844.19535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81844:22..255+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCCGCCCACACAGCTGCGTTCACCAGGCACAGGCGTGCGACGGGCGCG
ACGAGGAGATGCTTGCACACATCAGATCCCTACATATCAAGCTATGTAGT
TATTTCAAAGGGTGTGTCCCTTGTGATCGTTATAGAGCATACGTAGGCGA
TTTGTTTATGTTTGCCCGAGTGTTCGAAGGGACATGTGTGATCGGGGTAA
GTTTGCCTGAGGTGCTCTGAAGGACATGGGTGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81844:22..255+

>mRNA_Ecto-sp13_S_contig81844.19535.1 ID=mRNA_Ecto-sp13_S_contig81844.19535.1|Name=mRNA_Ecto-sp13_S_contig81844.19535.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81844:22..255+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGTCCCTTGTGATCGTTATAGAGCATACGTAGGCGATTTGTTTAT
GTTTGCCCGAGTGTTCGAAGGGACATGTGTGATCGGGGTAAGTTTGCCTG
AGGTGCTCTGA
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