mRNA_Ecto-sp13_S_contig818.19530.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig818.19530.1
Unique NamemRNA_Ecto-sp13_S_contig818.19530.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig818.19530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig818contigEcto-sp13_S_contig818:12897..16778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size685
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_000400.2
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464089.7194095-CDS-Ecto-sp13_S_contig818:12896..132131681464089.7194095-CDS-Ecto-sp13_S_contig818:12896..13213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig818 12897..13213 -
1681464089.7294424-CDS-Ecto-sp13_S_contig818:14243..144411681464089.7294424-CDS-Ecto-sp13_S_contig818:14243..14441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig818 14244..14441 -
1681464089.7388566-CDS-Ecto-sp13_S_contig818:16609..167781681464089.7388566-CDS-Ecto-sp13_S_contig818:16609..16778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig818 16610..16778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig818.19530.1prot_Ecto-sp13_S_contig818.19530.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig818 12897..16778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig818.19530.1

>prot_Ecto-sp13_S_contig818.19530.1 ID=prot_Ecto-sp13_S_contig818.19530.1|Name=mRNA_Ecto-sp13_S_contig818.19530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
KHRTQRATRPSGHTPAEDRTSNIRSTAPAPLSCASPSRPHRVGEAHLLVS
IDKFCAGRMYPYSFGPDYAIPKDGKVTESSRPFERDVHLPESPFSANDKN
DTGDPSPRVGCSSSSSFASGAQGCLRYTAWPTAACNSTEDRYDSSDPLDF
PPSSRSQGTLPTRLTDRNPKRAPVAAVETSEEETPLFQPGQQQSQQQRQP
TLTQQRQQLTQQPQKQQSQHQRQQLPQR
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mRNA from alignment at Ecto-sp13_S_contig818:12897..16778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig818.19530.1 ID=mRNA_Ecto-sp13_S_contig818.19530.1|Name=mRNA_Ecto-sp13_S_contig818.19530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig818:12897..16778- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACACCGCACACAGCGCGCCACGCGTCCCTCTGGACACACTCCCGCCGA
AGACCGGACATCCAACATAAGGAGCACAGCACCAGCCCCACTTAGCTGCG
CCTCGCCCTCTCGCCCCCACCGCGTGGGGGAAGCACATCTTCTTGTCTCC
ATCGACAAATTTTGTGCAGGTCATTAATTTTTTAGGCAGCGAGCGGGGGG
GGAACATAAACCTTTTTCTCGGTGTGTGTACCGAATGGGGCCCCGTTGTG
TTTTGGTCAAAATCGTTGGAGAGATCACGCCAATGAAACGTCAGTAGAGC
TGCGTGTTTCGGGATAGTCTGGTCGATGGCCAACGAACCTGCCCCTCCCC
CTTCCAACAGCAGCAAAAAAAATTACAAGGTGAGCGGCCTTGAACATTGA
GTGCTCTGGATAGATGGGTGTGTCGCTGATCTACGTAGATACCGGCATGC
GTTCTTTCCCAGACATCACCCATTGATCTGGCGGCAGCAGGTGAGTGGGG
AAAGAAGCAGGGTGCGCTATGTGCACATGCGGCGATGTTCTTTGCGAACC
AACGTGACCTAGGGGAGTGCTTAATCCCTCAAGTTGGATTAGTATGCTGC
CATCAGCGTCAAGTATGAACAAAAGATATCATGCCTGTCTGTCTGTGGGG
GCGCGACAACTACCCGCAGCTTATCTACTGTACAGTAGTGGAACAGACCA
TCGCCCCCATTACACTGAGTACTGCTGTTGTAGTGAAGCACTAGTCACGT
AGAGCTTTGTCCTGCAGATGTCATGGCCTCGGGGCCTTCTTCTCTAACGC
GCCGAGGGTGTGGTTGCCAGACGTCGTTCACAATATTTGCCCCAAGCCTG
CTGCCAGCGAGTTAGCTGCCGTATTGCGACCATCCGCAGCAGAGTCCCAA
GCGTCATGGGTGCGGCAGCAGCAAAATGGGTATACTGCAGGCATGTTGCG
CCATGACTTTTCCGCGATTGTGTCTCTCAAATATACATGGTGCCGGAACA
GCAGATAATTACTTTGCTCTCCCCCATGCATCGGGCTCTGCCTGTGTGAT
GACCTCTCTTCAGCAGCACGTACAGTAAAACAATGTACCTCCAATGTATA
GCGAAAGGCTACAGTGGCAGCAGACTTCACGCCGCGCGGGTATAGTGCTG
TTGCAGGCAGCGCGGCGTTACAAACACGCAAGGTACATAAGAAGGACAAC
CCTGCAACTCGCTGGTTGAACACTGCGCAGCTCGTCTAAGATACGATTGA
AGTCGATTTGTAGTTGATGTACCTTGCTGTTTGGCGCTGGCATGCGACAC
GTTTGTACATGTAGGCTAGACGATCGCACTACTGCTGTTGGCCAGAGTCT
AGCGTGTGTCAACTAAGATGAGACAGTGCCAGACAGGAAGGTGCTGCCCG
TGAACGGGGCGGCTCGCTCTTCAGACGGAATTAACCCATTCCCGCAGATA
GTGTACTTTTTTGTTGTGCTGGGGAGTGCTATTCAACACCATGTAAAGTA
GTTGCGGTACAGTATGGCATACTGTTGTAACAGCTCTGCGCTCGGTTGTG
ACGACAAGCTTCCTTCACCCTGCAGCAGACCACAAGGTGTGTGTGTGCCT
TGCCCCTACACATTTTTATTCCGCTTACTTTCTTTGTTTATGTTGCTGTG
CTGCGCTATGCTGCTTACTCGCACCCATCACTCGACATTCTGTTCTAAAG
TTTCTAACCAAGGACCCACTTACGTACGTACGCAAATCTCATTTCGCCGG
AGCTGGTATCTCATGAGTATTCACTTCATCATCTGGTAGTTTTTCTGTGT
TTGTACTTATTTAACTAAAAAAATCTGTGGGGTACCCAACGTTCACTTTT
ACAACAGTTTGTGTAGCTTGACGGCGCACTTATTCATGTTGTCGGTTTGA
TTTTATTGAGGCACACAGCTACCAATTTCTGAAGTGCCGCGTTCTGTTCC
CCGTAAAGCAGGAGCCTACATCGTTACTGCCTGCTCCGCTGTATTCCCGC
CACCCCCGTCCCCATTTCACGTTTTGGGCATGCAGACGCGCTTGACCGCC
CCCCCCAGCCCCCCGCCCGCCACATACGGGAAGGGATTCCCTCGGCATTG
CATCCCCTTTGTTGCCAATGACCCACCGGAACCACTTGACGACACCCATG
TACAGACGTGTAGCCTTCGTAGCACACTGACTCGTCGATGCGCCGAACAT
CCTCACGCCCAACCATTGATTCCCGTGAGATCGGCTGCCTCACCCTGCTC
GACTCACCCTGCTCGACTTGCGCCACTCGTTCTTCTCTAACCGCAAGAAC
ACGCACGACATTGCCTGCACGTACGGCCGGCGACCAGGAAGAATGTATCC
GTACAGCTTCGGTCCCGACTACGCCATCCCCAAGGACGGAAAAGTCACTG
AGTCGAGTCGTCCCTTCGAACGAGACGTGCACCTTCCCGAGTCGCCGTTT
TCGGCCAACGACAAGAACGACACCGGAGATCCTTCTCCTCGAGTTGGCTG
CTCAAGCTCATCGTCGTTCGCGTCGGGCGCACAAGGTTCGTCGTTTTTGA
TTGTTGCTGTCGTTGTTGCTGTTGACGCTGTTGTCATTTTGATCTTTGCC
TTTGTTGTTGTTGTTGTTGTTTTCTCTCACACTACACTCATTGTCGAAGC
CAGGGGGTCTGTACCAGCTTCCCTGTGGCATCGACGTATGTCTCGTAGAT
TGTTCGACCTCTTCCCCGGAGTTGTAGTTTTGTAGCATTGCTTTGCCGAG
GGACGTTAAAAGGCACGTCTTGTGCCCAGTACAAAGAGGTCTTGCGACAC
GACTGATTCGCGTGGCACTTTTAGGTCTTGACTTTAGAGCTGGGTGCCCC
ACTAACAAACCATGGCCCCCCTGCTGTATCTTCGTTGGACGCATGGCCAG
CTCTGATCCTCACCAGATAGAAGATTAGCAGTTTGGCGTACAACGTTTTG
AGACCATGGGTCCAATCTCCTATCGTCTCGGCTAGACGTAGTAGCATTCT
CACGGACAGTAGTACCTCCACAACGTTGCTGTCACACAACGCCGCCGTAC
GCCTGACCACCTCTTGACTCCAGCCAAGTGGCTACATACCTGCAAGCTTT
CCAGGTAGGCTAGGCATCTGTGCCTCACTATACTGTGCCCAAGTAGTACT
TACATTGGCAAACACTGGGCCTGATCACAGAAATAGGCCTCACTACCCTC
CTTCCTTACGTTGACATGCTGGTGTCTTGTTTAAAAACTGCTGTTAACTC
ACCACCTTAACCTAACCCCGCAGGCCCAGAGCAGTACGCACTACAATAAC
CCCAACTACGTGCGATGGGCTCAGAACCCGACTGGTGCTAGGGACGGCTA
TCTTTGACTCAATTGTTAATGCATGGTCAATGGTGTGGATGAAAAAATAC
GGCGCATGTACAGATTACTATACCCTTGCCCCCCTCCCCTCCCTCGTATA
GGAACACCAGCGGAAGCCTTCTTCAGAGTGATACATAGGTACCTGCAACA
TGTGTATTGGTGCTTGACGAGTGATCCCCCCCTTCCGTCCTTCACGTGCG
CCCCCTTCCGTTCAGGTTGCTTAAGGTACACTGCTTGGCCAACGGCCGCC
TGCAACAGCACCGAGGATCGCTACGATTCCTCCGACCCTCTCGACTTTCC
CCCCTCCTCTCGCTCTCAAGGCACGCTTCCTACCAGACTTACCGACCGAA
ATCCCAAACGCGCCCCTGTTGCGGCGGTGGAGACCTCGGAAGAGGAAACG
CCCTTGTTTCAGCCGGGGCAGCAACAGTCACAGCAGCAACGACAACCAAC
GCTAACGCAGCAGCGACAGCAGCTAACACAGCAACCGCAGAAACAACAGT
CACAACATCAGCGACAACAGCTACCACAACGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig818:12897..16778-

>mRNA_Ecto-sp13_S_contig818.19530.1 ID=mRNA_Ecto-sp13_S_contig818.19530.1|Name=mRNA_Ecto-sp13_S_contig818.19530.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig818:12897..16778- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACACCGCACACAGCGCGCCACGCGTCCCTCTGGACACACTCCCGCCGA
AGACCGGACATCCAACATAAGGAGCACAGCACCAGCCCCACTTAGCTGCG
CCTCGCCCTCTCGCCCCCACCGCGTGGGGGAAGCACATCTTCTTGTCTCC
ATCGACAAATTTTGTGCAGGAAGAATGTATCCGTACAGCTTCGGTCCCGA
CTACGCCATCCCCAAGGACGGAAAAGTCACTGAGTCGAGTCGTCCCTTCG
AACGAGACGTGCACCTTCCCGAGTCGCCGTTTTCGGCCAACGACAAGAAC
GACACCGGAGATCCTTCTCCTCGAGTTGGCTGCTCAAGCTCATCGTCGTT
CGCGTCGGGCGCACAAGGTTGCTTAAGGTACACTGCTTGGCCAACGGCCG
CCTGCAACAGCACCGAGGATCGCTACGATTCCTCCGACCCTCTCGACTTT
CCCCCCTCCTCTCGCTCTCAAGGCACGCTTCCTACCAGACTTACCGACCG
AAATCCCAAACGCGCCCCTGTTGCGGCGGTGGAGACCTCGGAAGAGGAAA
CGCCCTTGTTTCAGCCGGGGCAGCAACAGTCACAGCAGCAACGACAACCA
ACGCTAACGCAGCAGCGACAGCAGCTAACACAGCAACCGCAGAAACAACA
GTCACAACATCAGCGACAACAGCTACCACAACGT
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