mRNA_Ecto-sp13_S_contig81764.19525.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81764.19525.1
Unique NamemRNA_Ecto-sp13_S_contig81764.19525.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81764.19525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81764contigEcto-sp13_S_contig81764:28..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size519
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000550.2
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464089.5069487-UTR-Ecto-sp13_S_contig81764:27..2051681464089.5069487-UTR-Ecto-sp13_S_contig81764:27..205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig81764 28..205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464089.5166314-CDS-Ecto-sp13_S_contig81764:205..5441681464089.5166314-CDS-Ecto-sp13_S_contig81764:205..544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81764 206..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81764.19525.1prot_Ecto-sp13_S_contig81764.19525.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81764 206..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81764.19525.1

>prot_Ecto-sp13_S_contig81764.19525.1 ID=prot_Ecto-sp13_S_contig81764.19525.1|Name=mRNA_Ecto-sp13_S_contig81764.19525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MLNTLSGLKIKPFAARQVQIGNDKAKGVLVNDKFAASVKGLQGMVTFGAS
AVGKERAESFLAPFTDMSLRLHHYVSKYRSAFTGEYGSALEENLVTAIDH
DLELVAKAAGQAS
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mRNA from alignment at Ecto-sp13_S_contig81764:28..544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81764.19525.1 ID=mRNA_Ecto-sp13_S_contig81764.19525.1|Name=mRNA_Ecto-sp13_S_contig81764.19525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=517bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81764:28..544+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATGCCAGGGGTAGTGGGAGGGGTCTCCACTGGCCAGCGCGAGGCGGA
AAAACGTGAGTCTAAGGACTGGGTGGCTAAAGATGGGATGCGGCGGTGGT
TTGCGGCGGCCTACATTGGGCAACCTGTCAACATGTCGCGACTGCAAGAA
CAAGTGGGTGACGAGTTAGTCGTGAACGATGCTCAACACTTTGTCCGGAC
TGAAGATCAAGCCATTTGCGGCACGCCAGGTTCAGATTGGTAACGACAAG
GCCAAGGGCGTTCTAGTTAACGACAAGTTCGCTGCGTCGGTGAAGGGCCT
TCAAGGGATGGTGACTTTCGGGGCATCCGCGGTTGGGAAAGAGCGCGCGG
AGTCTTTTTTGGCGCCATTCACTGACATGTCGCTACGTCTGCACCATTAC
GTGTCGAAGTATCGCTCTGCGTTCACGGGGGAGTATGGCTCGGCGTTGGA
GGAAAACCTGGTGACTGCTATAGACCACGATCTTGAACTCGTAGCGAAGG
CCGCGGGCCAGGCGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81764:28..544+

>mRNA_Ecto-sp13_S_contig81764.19525.1 ID=mRNA_Ecto-sp13_S_contig81764.19525.1|Name=mRNA_Ecto-sp13_S_contig81764.19525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81764:28..544+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCAACACTTTGTCCGGACTGAAGATCAAGCCATTTGCGGCACGCCA
GGTTCAGATTGGTAACGACAAGGCCAAGGGCGTTCTAGTTAACGACAAGT
TCGCTGCGTCGGTGAAGGGCCTTCAAGGGATGGTGACTTTCGGGGCATCC
GCGGTTGGGAAAGAGCGCGCGGAGTCTTTTTTGGCGCCATTCACTGACAT
GTCGCTACGTCTGCACCATTACGTGTCGAAGTATCGCTCTGCGTTCACGG
GGGAGTATGGCTCGGCGTTGGAGGAAAACCTGGTGACTGCTATAGACCAC
GATCTTGAACTCGTAGCGAAGGCCGCGGGCCAGGCGTCG
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