mRNA_Ecto-sp13_S_contig8171.19521.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: D8LNN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN5_ECTSI) HSP 1 Score: 285 bits (730), Expect = 3.630e-95 Identity = 141/156 (90.38%), Postives = 149/156 (95.51%), Query Frame = 1
Query: 1 MPCFAYVGGCLPMLLLHTRHSGAVLGLSYLTEDVMVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIVSEKYDLAVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGDRRE 468
MP F Y GGCLP+LLLHTRHSGAVLGLSYLTEDVMVSSCYAASNLLGLIKFIKFLELAAANMLA TNLGICINLALIVSEKYDLA++SIYV+ELFVGICMFGIVSWLL FRMKEIKECWEAH RIRYYF LTLFGTAVNLGLGICGVVY++GD++E
Sbjct: 1 MPYFTYGGGCLPILLLHTRHSGAVLGLSYLTEDVMVSSCYAASNLLGLIKFIKFLELAAANMLAITNLGICINLALIVSEKYDLAILSIYVIELFVGICMFGIVSWLLTFRMKEIKECWEAHIRIRYYFGLTLFGTAVNLGLGICGVVYIIGDQQE 156
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.040e-55 Identity = 103/196 (52.55%), Postives = 121/196 (61.73%), Query Frame = 1
Query: 37 MLLLHTRHSGAVLGLSYLTEDVMVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIVSE----------------------------------------------------KYDLAVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGDRRE 468
MLLLHTRHSG ++ L+ +TEDVMVS+CYAA+NL+GLIK I F+ + ++NMLAATNLGICINLALIVS K D ++SIY++E VGICM IV WL +FRM EIKECW H+RIRYYFCLTLFGTAVNLGLGICG YV GDR+E
Sbjct: 1 MLLLHTRHSGTLVCLALMTEDVMVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIVSSHRTMTRVKTVSSPRVLFIMLLVSASLAAATVPLWETTVVLGTHFWFTNSDPVKNDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYVFGDRKE 196
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI) HSP 1 Score: 139 bits (349), Expect = 3.250e-37 Identity = 80/178 (44.94%), Postives = 98/178 (55.06%), Query Frame = 1
Query: 94 EDVMVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIVSEKYD------------LAVISIYV-----------------------------------------MELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGDRRE 468
+ M+S C+ +NL+ LIK KFLELA+ NMLA TNL IC+NLAL+V D L V+S+ + +E FVGICMF IV+WLL+FRM EIKECW+ HARIRYYF LTL T VNL LGICGV+Y++GDR E
Sbjct: 2 QATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGDREE 179
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: A0A6H5KRY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRY2_9PHAE) HSP 1 Score: 136 bits (343), Expect = 2.570e-36 Identity = 79/174 (45.40%), Postives = 96/174 (55.17%), Query Frame = 1
Query: 103 MVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIV--------------------------------------------------SEKYDL--AVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGDRRE 468
M+S C+A NL LIKF+KFLELA+ANMLA TNL IC+NLAL+V +K DL +V+S ++ E VGICM IV+WLL+FRMKEIKECW+ H RIRYYF LTL T VNL LGI G VY+VG+ +
Sbjct: 1 MISVCWAGGNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTLSRVSSLSSPRVIWLSLVLAVGGAAAAVPSWKTIILTGTYFSPYSEDKQDLDWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLTLIATGVNLVLGIFGTVYIVGEGQR 174
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI) HSP 1 Score: 137 bits (344), Expect = 2.240e-35 Identity = 85/197 (43.15%), Postives = 103/197 (52.28%), Query Frame = 1
Query: 40 LLLHTRH--SGAVLGLSYLTEDVMVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIVSEK----------------------------------------------------YDLAVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGDRRE 468
LLL H SG + L ++TE MVS C+A +L LIK +KF ELAA+NMLA TNL IC+NLALIV +D V++ + +E FVGICM IV WL+IFR EIK+ W+ HARIRYYF LTL T VNL LGICG +YVVGD +E
Sbjct: 76 LLLFFSHWLSGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGDMKE 272
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: A0A6H5JZY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZY2_9PHAE) HSP 1 Score: 127 bits (319), Expect = 5.270e-32 Identity = 83/232 (35.78%), Postives = 101/232 (43.53%), Query Frame = 1
Query: 64 GAVLGLSYLTEDVMVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIVSEKY-------------------------------------------------------------------------------------------------DLAVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGDRRE 468
G + L L + M+S C+A +NL+ LIK KFLELA+ NMLA TNL ICINLAL+V + D +S + +E FVGICMF IV+WLL+FRM EIKECW+ HARIRYYF LTL T VNL LGICGV+Y++GDR E
Sbjct: 11 GLLYQLLILMQATMISVCWAGANLIKLIKTFKFLELASVNMLATTNLAICINLALVVMSESINNTSPSAPHGICSLLPLSGTSVCGLLSLVLPTVGDTAQLQSHGDQQPGVNSLSSPLLIMVSLVISIGAAAAAAPFWDFIILSGTGFFPETENQRGSDWITVSRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKTHARIRYYFGLTLIATGVNLILGICGVIYLIGDREE 242
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.320e-31 Identity = 72/171 (42.11%), Postives = 90/171 (52.63%), Query Frame = 1
Query: 103 MVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIVSEK----------------------------------------------------YDLAVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGD 459
M+S C+A NL IK +KFLEL A+NMLA TNL IC+NL+LIV + ++ +IS +++E VGICMF IVSWLL+FRM EIKECW HA +RYYF LTL GT NL LG+CG +YV+ D
Sbjct: 1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISD 171
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: D8LNN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN7_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.670e-31 Identity = 55/82 (67.07%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 241 KYDLAVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGDRRE*VLIDW 486
KYD ++SIY+ E VGICM IVSWL +FRMKE+KECW+ H RIRYYFCLTL GTAVNLGLGICG +V GDR++ +L W
Sbjct: 35 KYDFVIMSIYIFEFIVGICMLVIVSWLAMFRMKEMKECWKIHPRIRYYFCLTLLGTAVNLGLGICGAAFVKGDRKQPLLQIW 116
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI) HSP 1 Score: 122 bits (306), Expect = 7.260e-31 Identity = 72/172 (41.86%), Postives = 88/172 (51.16%), Query Frame = 1
Query: 103 MVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIVSE----------------------------------------------------KYDLAVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYVVGDR 462
M+S C+ L G IK +K+LE ++NMLA TNL ICINLAL+V+ K D ++SI ++E VGICMF IVSWL+ FRM+ IKECW+ HARIRYYF LTL TAVNL LGI G+ YV D
Sbjct: 1 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVKSVSTPALVLLFLAISVIAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYVFRDN 172
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.400e-30 Identity = 72/173 (41.62%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 88 LTEDVMVSSCYAASNLLGLIKFIKFLELAAANMLAATNLGICINLALIVSE----------------------------------------------------KYDLAVISIYVMELFVGICMFGIVSWLLIFRMKEIKECWEAHARIRYYFCLTLFGTAVNLGLGICGVVYV 450
+T+ M+S C+ L G IK +K+LE ++NMLA TNL ICINLAL+V+ K D ++SI ++E VGICMF IVSWL+ FRM+ IKECW+ HARIRYYF LT+ GTAVNL LGI G YV
Sbjct: 3 MTQGTMISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYV 175 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8171.19521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8171.19521.1 >prot_Ecto-sp13_S_contig8171.19521.1 ID=prot_Ecto-sp13_S_contig8171.19521.1|Name=mRNA_Ecto-sp13_S_contig8171.19521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp MPCFAYVGGCLPMLLLHTRHSGAVLGLSYLTEDVMVSSCYAASNLLGLIKback to top mRNA from alignment at Ecto-sp13_S_contig8171:3018..6798+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8171.19521.1 ID=mRNA_Ecto-sp13_S_contig8171.19521.1|Name=mRNA_Ecto-sp13_S_contig8171.19521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3781bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8171:3018..6798+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8171:3018..6798+ >mRNA_Ecto-sp13_S_contig8171.19521.1 ID=mRNA_Ecto-sp13_S_contig8171.19521.1|Name=mRNA_Ecto-sp13_S_contig8171.19521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8171:3018..6798+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |