mRNA_Ecto-sp13_S_contig12335.1952.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12335.1952.1
Unique NamemRNA_Ecto-sp13_S_contig12335.1952.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12335.1952.1 vs. uniprot
Match: D7G4J0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J0_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 1.010e-91
Identity = 263/318 (82.70%), Postives = 270/318 (84.91%), Query Frame = 1 
Query:    1 HQVWKRDMLEQLEAVAVSEREAQEERLKAERQAELEAWRERRREQLERLIEVRPMFERRRAMAEEKLIAAGGGVDGGTGGLRDGAAADPVSAAVVQSLDAKLEGIDDLIARLEIEEGEEGYGFVPSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXCGYDADREASQPPTETAVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKISVVEQLKAKEASGVSRNGVGGVXXXXXXXXXXXXXXXSEVSPPPKMDLLDAVAAMILGRYPQDPRASSEEHFQKIAAMHQNMK 954
            H VWKRDML QLEAVA SER+A+E+RL AERQAELEAWRERRREQLERLIEVRPMFERRRAMAEEKLIAAGGGVDGG GGL DGAAADPVSAAVVQSLDAKLE IDDLIARLEIEEGEEGYGFVPSDDXXXXXXXXXXXX       XXXXXXXX   DADREASQPPTETA   XXXXXXXXXXXXXXXXXXX                XXXXXXXXXXXXXXXXXXXX     SVVEQLKAKEASGVS NGVG V   XXXXXXXXXXX SEV+PPP+M LLDAVAAMILGR+PQDPRASSEEHFQKIAAMHQ+MK
Sbjct:  450 HLVWKRDMLAQLEAVATSERDAKEKRLNAERQAELEAWRERRREQLERLIEVRPMFERRRAMAEEKLIAAGGGVDGGPGGLGDGAAADPVSAAVVQSLDAKLEDIDDLIARLEIEEGEEGYGFVPSDDXXXXXXXXXXXXYLYNGENXXXXXXXXX--DADREASQPPTETAXXXXXXXXXXXXXXXXXXXXXXTKASVQPGDVANVAGAXXXXXXXXXXXXXXXXXXXX-----SVVEQLKAKEASGVSGNGVGSVREGXXXXXXXXXXXGSEVTPPPEMGLLDAVAAMILGRFPQDPRASSEEHFQKIAAMHQHMK 760
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BLAST of mRNA_Ecto-sp13_S_contig12335.1952.1 vs. uniprot
Match: A0A6H5JAG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG3_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 1.520e-81
Identity = 231/319 (72.41%), Postives = 236/319 (73.98%), Query Frame = 1 
Query:    1 HQVWKRDMLEQLEAVAVSEREAQEERLKAERQAELEAWRERRREQLERLIEVRPMFERRRAMAEEKLIAAGGG-VDGGTGGLRDGAAADPVSAAVVQSLDAKLEGIDDLIARLEIEEGEEGYGFVPSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXCGYDADREASQPPTETAVSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKISVVEQLKAKEASGVSRNGVGGVXXXXXXXXXXXXXXXSEVSPPPKMDLLDAVAAMILGRYPQDPRASSEEHFQKIAAMHQNMK 954
            H VWKRDMLEQLEAVA SER A+EERL AERQAELEAWRERRREQLERLIEVRPMFERRRAMAEEKLIAAGGG VDGGTGGL DG AADPVSAAVVQSLDAKLEGIDDLIARLEIEEGEEG+GFVPSDDXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXX                                   XXXXXXXXXXXXX  SVVEQLKAKEASG SRNG+GGV               S VSPPP+M LLDAVAAMILGRYPQDPR SSEEHFQKIAAMHQ+MK
Sbjct:  451 HLVWKRDMLEQLEAVAASERNAKEERLNAERQAELEAWRERRREQLERLIEVRPMFERRRAMAEEKLIAAGGGGVDGGTGGLGDGVAADPVSAAVVQSLDAKLEGIDDLIARLEIEEGEEGFGFVPSDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXAEGGTAPGQSSGGEAAKASVQPGEVANVAGAAADAXXXXXXXXXXXXXXASVVEQLKAKEASGFSRNGIGGVREGGKGNGGKERGDGSGVSPPPEMGLLDAVAAMILGRYPQDPRVSSEEHFQKIAAMHQDMK 766
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12335.1952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J0_ECTSI1.010e-9182.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAG3_9PHAE1.520e-8172.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12335contigEcto-sp13_S_contig12335:517..4674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score291.2
Seed ortholog evalue5.7e-76
Seed eggNOG ortholog2880.D7G4J0
Model size954
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2CZMF@1,2SAWM@2759
Cds size933
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.6428857-UTR-Ecto-sp13_S_contig12335:516..5371681462656.6428857-UTR-Ecto-sp13_S_contig12335:516..537Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12335 517..537 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.651904-CDS-Ecto-sp13_S_contig12335:537..6691681462656.651904-CDS-Ecto-sp13_S_contig12335:537..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12335 538..669 +
1681462656.6601648-CDS-Ecto-sp13_S_contig12335:2493..26941681462656.6601648-CDS-Ecto-sp13_S_contig12335:2493..2694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12335 2494..2694 +
1681462656.668996-CDS-Ecto-sp13_S_contig12335:3518..40411681462656.668996-CDS-Ecto-sp13_S_contig12335:3518..4041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12335 3519..4041 +
1681462656.6803818-CDS-Ecto-sp13_S_contig12335:4597..46741681462656.6803818-CDS-Ecto-sp13_S_contig12335:4597..4674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12335 4598..4674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12335.1952.1prot_Ecto-sp13_S_contig12335.1952.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12335 538..4674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12335.1952.1

>prot_Ecto-sp13_S_contig12335.1952.1 ID=prot_Ecto-sp13_S_contig12335.1952.1|Name=mRNA_Ecto-sp13_S_contig12335.1952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MLEQLEAVAVSEREAQEERLKAERQAELEAWRERRREQLERLIEVRPMFE
RRRAMAEEKLIAAGGGVDGGTGGLRDGAAADPVSAAVVQSLDAKLEGIDD
LIARLEIEEGEEGYGFVPSDDDEDEDGTDRDDDDDYLYNGENEDDDNDCG
YDADREASQPPTETAVSAAAAAAAAAAAGGTAPGQSSGGGAAKALVQPGG
VANVAGAAADAAARKQANKKKKKNKKKISVVEQLKAKEASGVSRNGVGGV
RDGEGGNGEKEGGDGSEVSPPPKMDLLDAVAAMILGRYPQDPRASSEEHF
QKIAAMHQNMK
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mRNA from alignment at Ecto-sp13_S_contig12335:517..4674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12335.1952.1 ID=mRNA_Ecto-sp13_S_contig12335.1952.1|Name=mRNA_Ecto-sp13_S_contig12335.1952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4158bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12335:517..4674+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCAGGTCTGGAAGCGCGACATGCTTGAGCAGCTTGAAGCTGTAGCTGT
CTCGGAACGCGAGGCTCAAGAAGAAAGACTTAAAGCGGAGAGGCAGGCAG
AGCTAGAGGCCTGGCGAGAGCGACGGCGGGAGCAACTCGAGAGACTCATC
GAGGTAAAGACTACTGCTTGTGATGCTGCTGTTGCTCTTCTTCGGCGGCC
AGGTGACTAGTGTTGAATGACCCCGTTGAATTTTCTTGTTCATATGGATC
ACTTGGATGTTGTGGAGGTGGGGAGCTACCACTCCCCTGCCTACCATCGA
CAACATTTTATTTTCTGAAGGGGGCGGCGGGGGGGGGGCTTTCCTCACTC
ACCTATCCACCTTGCTGCTGCAAACATGCAAAATTTCCAAGGCGCCTCTC
GGGAATTTCCCCGCGGTAGTTTTCCCGCGGGATTTCCATGGGAACGGTGA
TTGGTAACGTTACCGTGATAATTTAAGGTTACCGTACCCATCCAAATCAT
TACCGAGCAAATGGCTTTCTCCCATTCCCATCCAAATCGTTACGAATGAT
ATGAAATCCCGTTGTTCCCACCCAGCCAATTACTTTGCAAAATGTCGAAA
TCCCGTGGCTTTTGGTTGCCACCCAAGCAATTGCCGGGGAAATGTTGAAT
TCCCGGTGCCGTATGGGAACCAAAACATATTTTACCGTACACGTAGCTGT
GGGGGTAGTCTCATTTGCAGCACTGCACGTGGCGGGTTCGACTCCACACC
ATCTCCTTTTCTTTTTTTTTACTCTGCTGTGTAGGTTATCTCTCTTTTTA
TCGATCCATCAAACGAAAGGGAACCTGTTTTTCTGTGTGTCTTAAGTCTT
TGAATATTTTTTGGTTTTGAGTTTTGCCGTCTTTTATTTCTTTTTTCTCG
TATGATTGGACTCTGTCGTCTGCCCCTCTGGCCCCCGTCCTCCACTTCTA
CTAGCTAGACGACCCAACCGGGGTCACATAGGAGGGGGGGGGCTGGATCT
CCTCCTGCGGTTCCTCCCTGAGATACTTTTATCGCGAGAAGGGTACAGCA
ATCCCTTCCCTCTCGACTTATGAAGTCGATCAAGTTCACTAACAACGAGC
TTTGCAACGCGTCGCTTCCAACTTAGCCATCTGTAGTCTGGTGTATCTTT
TAGTTTGTTGTGTTTGAACGGCTCGCCTGCGATGTGACGCAGATACGGTA
CACTATGCTTGTGGTTGAGCTCGATATACGTGTAAGTACGTGGTAGCTGG
TGGTTTATGCATCGTCTGGCAGATAAGTTTGGTGTTTTCAGTCCTCACGT
ATTAATAGCTGAAATAGATATGGTTAGTGATCAAGTGATGGATATTTCGA
GGTGTCGCTCTAGACGTAATGGTGTAGTTCGTTTGGTTTGTCCTTAACCT
TTTACCTCGTCTTTCGGTAGCTTGACCGCGAGATTTTCGCCTGTGGTCTC
AAAACAATTGAAAAACGAGATGCGATAGGTTCCATTCGTGTGTTTCTTGT
TCTTTGTGGAACGCTCTGTTTGGGTGTCAAGCGCACTGAAAAAAAACGCA
ACACAGTTACAGTGCATCGCTTTGTGGAGTGTTTCCTACGTTACCGTGCA
TTACCGTGGTGGATTACCGTGGTGGTCCCCTGCCGCGGCATTACCGTGGT
GCCGAGTTACCACCCAAATATTACCGTGCATTCCCGTGGTGGCTTGTTCC
CGTACGGGTGTACCGTACTGGGCGGTTACCACCCAAATATTCCCGTGCAT
TACCGTGGTGGCCAGTTACCACCCAAACGTCAACATGATGGCTAGTTACC
ACCGAAATATCACCGTGTATTATCGTGTTCGCTGATTCCCGTACCAATCG
TTACCGAATTGAGAAATCGTTCCCGAGAGGAGCCTTGAAAATTTCAGAGT
TTCACGAACCGACTGCACTCAAACACCAAAGGTCCCGAACAATGTTGTTG
CCAACCTTCTCCGCACGTCCCACAAAGGTGCGCCCGATGTTCGAGCGGCG
CAGGGCAATGGCGGAGGAGAAACTTATCGCGGCAGGCGGAGGCGTCGACG
GCGGCACGGGGGGGTTAAGGGACGGAGCGGCAGCCGATCCGGTCTCGGCG
GCCGTGGTCCAAAGCCTTGACGCCAAGCTCGAGGGCATCGATGACCTGAT
CGCCAGGCTGGAGATCGAGGAGGGGGAGGTAGGATTTCTGATTGCCTCGT
TGCTTGTGTTGGATTGAGCATCGAGGGAGTGGAGAGAGAGGCGTGAAGAA
TTCGTGTACACAGACCTCTTGTCATTGCTGATGTGATCGCGGCTTGATTC
TTTCAGTGCCTGTGTTCCTTTGGCTGGTGCACCTGTTGAATACTTGGAGA
ATACGTCTTTGCGGAAAGCGAGTTATTCGGCGTGCTTGCGGCTGTCCTGT
GGGTTGTGCACGCAGCACGGTTGGGTGGGCAAACCGTGTTCGTGTCAAGA
AACATGCTGTCGCTGCTGCCGTTGCTGCCGCTGCTGTTGCGTTTGGTATT
GTTATCGTGGCCTTTGTTGCCGCTGTTGTTGCGTCGTATATTGTGTCTTG
CTTGTCAGGGATCATAGCTACGCTATGTCGCTACCCTAGCGAACCACGGG
AGCCAACTAGCCACTTTGTCACGAACCAGCGCGATCATGCGACAACAGTG
TCGCCACCCTCGCAGCTTTTTCGTGCATCATGGCACCATGGCATGCCCAC
AGAGGGTAAAAAAATGAAGCCTCTGTTTGTGTGTTTTCGGCTCTTGTTAA
GTCTTCAAACTCGTGTTTGGGAGCTTCCTCCTTTTGCATGTTACCCCTCC
TGGTGTGTCCAAGACATACCGCCAGGCGCAACAGCTGACGTGCAGAGCAC
GTGTAGTGATGACACATCTCTGTCGTTCCTGCTCCGGCTCTGTTTCATTG
GTGGTCATCCATTCCGAGAGGAGTTTGTGCCCTCCTGTCGTTCCGAGTGC
CTTTCCCCCCGCTCCACGTGTCCCTTTGCCTCCTCCCTCCGATCGTGCTC
AGGAGGGGTACGGGTTCGTTCCCAGCGACGACGACGAAGATGAAGACGGT
ACCGACCGTGATGACGACGATGACTACCTGTACAATGGCGAGAACGAGGA
CGATGACAATGACTGCGGGTACGACGCCGACAGGGAGGCATCGCAACCGC
CAACAGAAACCGCCGTCTCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGGGGGCACAGCACCGGGGCAGTCATCAGGAGGGGGGGCCGCAAAAGC
ATTGGTGCAGCCAGGGGGCGTAGCAAACGTGGCAGGGGCAGCAGCGGACG
CTGCGGCAAGAAAACAAGCCAACAAGAAAAAGAAGAAAAACAAAAAAAAG
ATCAGTGTCGTCGAACAGCTAAAGGCCAAGGAGGCTTCAGGGGTTTCCAG
AAACGGCGTTGGTGGTGTGCGAGATGGGGAAGGGGGGAATGGCGAAAAGG
AGGGAGGGGATGGGAGCGAAGTGTCCCCGCCTCCTAAGATGGACCTCCTA
GACGCGGTCGCGGCGATGATTTTGGGTGAGAATTTTGCTGTTGTTGCGTA
GGTATCGTTGTCTTGGGAGACGTGGGAACGTGTAAGACCAAGCTTGGGCA
AGTGACGGGTCTTGTTTATGTTCTTATTTGTCCCTGTAGTCCAAACTCGA
CCTTGCTTTATTCTGTCGTCCCCTGCTCCTCTGTGTTCATTTTCACGGGT
GCCTGTTGGTTAGGTTTCCTTTGCTTGTGTTTTTTTCTTTCTCAATAGCG
CCAAGAGGAAGCTCACGTCAGTGAATAGTTTTTTGGTGTGATTTTGTATA
ATCGTGTCACCGTTTTGTGCTGTTGCGTGCCGCCATCACCATCGAGAGTT
TAAAACGCTCCTATGCTTACTATCGTCACTACATGTTTTTTGTCAACAGG
CGAAAAGAACGAAGGAAATGAAAATGTGTGAACTCAAGGCGTACGTACTC
TTGTCTTTTGCGAGGAAGGGAAGAAGCTGATCGATGTTCGTTCCTTGTTT
TATCAAGACAATTGCATCACCTGTTTCCTACTTCATTTTTGGTGCTTTTT
GCGTTGGTCCTTCGGCTCCTTGCTTTGTCAGGCCGTTATCCCCAAGACCC
AAGGGCTAGCAGCGAGGAACATTTCCAGAAGATCGCGGCCATGCACCAAA
ACATGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12335:517..4674+

>mRNA_Ecto-sp13_S_contig12335.1952.1 ID=mRNA_Ecto-sp13_S_contig12335.1952.1|Name=mRNA_Ecto-sp13_S_contig12335.1952.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12335:517..4674+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGAGCAGCTTGAAGCTGTAGCTGTCTCGGAACGCGAGGCTCAAGA
AGAAAGACTTAAAGCGGAGAGGCAGGCAGAGCTAGAGGCCTGGCGAGAGC
GACGGCGGGAGCAACTCGAGAGACTCATCGAGGTGCGCCCGATGTTCGAG
CGGCGCAGGGCAATGGCGGAGGAGAAACTTATCGCGGCAGGCGGAGGCGT
CGACGGCGGCACGGGGGGGTTAAGGGACGGAGCGGCAGCCGATCCGGTCT
CGGCGGCCGTGGTCCAAAGCCTTGACGCCAAGCTCGAGGGCATCGATGAC
CTGATCGCCAGGCTGGAGATCGAGGAGGGGGAGGAGGGGTACGGGTTCGT
TCCCAGCGACGACGACGAAGATGAAGACGGTACCGACCGTGATGACGACG
ATGACTACCTGTACAATGGCGAGAACGAGGACGATGACAATGACTGCGGG
TACGACGCCGACAGGGAGGCATCGCAACCGCCAACAGAAACCGCCGTCTC
CGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGGCACAGCACCGG
GGCAGTCATCAGGAGGGGGGGCCGCAAAAGCATTGGTGCAGCCAGGGGGC
GTAGCAAACGTGGCAGGGGCAGCAGCGGACGCTGCGGCAAGAAAACAAGC
CAACAAGAAAAAGAAGAAAAACAAAAAAAAGATCAGTGTCGTCGAACAGC
TAAAGGCCAAGGAGGCTTCAGGGGTTTCCAGAAACGGCGTTGGTGGTGTG
CGAGATGGGGAAGGGGGGAATGGCGAAAAGGAGGGAGGGGATGGGAGCGA
AGTGTCCCCGCCTCCTAAGATGGACCTCCTAGACGCGGTCGCGGCGATGA
TTTTGGGCCGTTATCCCCAAGACCCAAGGGCTAGCAGCGAGGAACATTTC
CAGAAGATCGCGGCCATGCACCAAAACATGAAG
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