mRNA_Ecto-sp13_S_contig81708.19520.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig81708.19520.1
Unique Name	mRNA_Ecto-sp13_S_contig81708.19520.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A6H5JQA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.350e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL
Sbjct:   69 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 106

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: D7FWW4_ECTSI (Protein required for templated centriole assembly n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW4_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.730e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL
Sbjct:  153 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 190

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A024U4Y3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4Y3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.240e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RY+ILTYA E+DRVHYPLPL +VDSP    L+RTI RL
Sbjct:  128 RYMILTYAVEFDRVHYPLPLNYVDSPSPDMLQRTIRRL 165

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A3R7AUF9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AUF9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.060e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVETPSPAMLQRTIRRL 112

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A7S0WPM5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WPM5_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 4.360e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTYAAE+DRVHYPLPL F D+P  + L+ TI RL
Sbjct:  121 RYLILTYAAEFDRVHYPLPLIFEDTPDPETLKATIRRL 158

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A813D5E3_9DINO (Ccdc61 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813D5E3_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 4.690e-9
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTY  E+DRVHYPLPLAF D P  + ++RTI RL
Sbjct:  142 RYLILTYTVEFDRVHYPLPLAFEDEPSAESMQRTIRRL 179

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A397C4S8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C4S8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.820e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVENPSPAMLQRTIRRL 112

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A397C2A6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C2A6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.080e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVENPSPAMLQRTIRRL 112

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A7S0K2G7_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K2G7_CAFRO)

HSP 1 Score: 58.5 bits (140), Expect = 5.420e-9
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTY  E+DRVHYPLPLAF D P  + ++RTI RL
Sbjct:   27 RYLILTYTVEFDRVHYPLPLAFEDEPSAESMQRTIRRL 64

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BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Match: A0A397DWQ1_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DWQ1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.630e-9
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 1

Query:    1 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL 114
            RYLILTYA E+DRVHYPLPL FV++P    L+RTI RL
Sbjct:   75 RYLILTYAVEFDRVHYPLPLNFVETPSPAMLQRTIRRL 112

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig81708.19520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JQA1_9PHAE	2.350e-16	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FWW4_ECTSI	2.730e-16	100.00	Protein required for templated centriole assembly ...	[more]
A0A024U4Y3_9STRA	3.240e-9	71.05	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]
A0A3R7AUF9_9STRA	4.060e-9	71.05	Uncharacterized protein n=4 Tax=Aphanomyces astaci...	[more]
A0A7S0WPM5_9CHLO	4.360e-9	71.05	Hypothetical protein (Fragment) n=1 Tax=Pyramimona...	[more]
A0A813D5E3_9DINO	4.690e-9	68.42	Ccdc61 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=...	[more]
A0A397C4S8_9STRA	4.820e-9	71.05	Uncharacterized protein n=3 Tax=Aphanomyces astaci...	[more]
A0A397C2A6_9STRA	5.080e-9	71.05	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A7S0K2G7_CAFRO	5.420e-9	68.42	Hypothetical protein (Fragment) n=1 Tax=Cafeteria ...	[more]
A0A397DWQ1_9STRA	5.630e-9	71.05	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig81708	contig	Ecto-sp13_S_contig81708:493..606 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	79.3
Seed ortholog evalue	4.2e-13
Seed eggNOG ortholog	2880.D7FWW4
Preferred name	CCDC61
Model size	114
KEGG ko	ko:K16755
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
Exons	1
EggNOG OGs	28IZ0@1,2QRAS@2759
Cds size	114
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464089.2404857-CDS-Ecto-sp13_S_contig81708:492..606	1681464089.2404857-CDS-Ecto-sp13_S_contig81708:492..606	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig81708 493..606 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig81708.19520.1	prot_Ecto-sp13_S_contig81708.19520.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig81708 493..606 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig81708:493..606+
coding sequence from alignment at Ecto-sp13_S_contig81708:493..606+

protein sequence of mRNA_Ecto-sp13_S_contig81708.19520.1

>prot_Ecto-sp13_S_contig81708.19520.1 ID=prot_Ecto-sp13_S_contig81708.19520.1|Name=mRNA_Ecto-sp13_S_contig81708.19520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRL

mRNA from alignment at Ecto-sp13_S_contig81708:493..606+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig81708.19520.1 ID=mRNA_Ecto-sp13_S_contig81708.19520.1|Name=mRNA_Ecto-sp13_S_contig81708.19520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81708:493..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATACCTGATCCTGACGTACGCTGCGGAGTACGACCGCGTCCACTACCC
CCTACCCCTGGCCTTCGTAGACTCGCCCCAGCGACAGCAGCTGGAGAGGA
CCATCGATAGGCTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81708:493..606+

>mRNA_Ecto-sp13_S_contig81708.19520.1 ID=mRNA_Ecto-sp13_S_contig81708.19520.1|Name=mRNA_Ecto-sp13_S_contig81708.19520.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81708:493..606+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATACCTGATCCTGACGTACGCTGCGGAGTACGACCGCGTCCACTACCC
CCTACCCCTGGCCTTCGTAGACTCGCCCCAGCGACAGCAGCTGGAGAGGA
CCATCGATAGGCTG