prot_Ecto-sp13_S_contig817.19516.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig817.19516.1
Unique Nameprot_Ecto-sp13_S_contig817.19516.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length658
Homology
BLAST of mRNA_Ecto-sp13_S_contig817.19516.1 vs. uniprot
Match: D8LN85_ECTSI (Histone deacetylase superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN85_ECTSI)

HSP 1 Score: 612 bits (1578), Expect = 6.140e-200
Identity = 554/672 (82.44%), Postives = 563/672 (83.78%), Query Frame = 0
Query:    1 MHKFNYRAVDLEGEILECPWVCRGCLRRSTSCGCPEGFPAWLDSDVGQARQSLFRRYNCRAGAAGCSFCRRGPGHLILLGEWARDVQAISEGIPPPSSRALLQTTPQQDRMGVLGDRTAIPDRLAPARAARAANALLRXXXXXXXXXXXXXXXXXXXXXXXXAEGDQYARDYRLRVGGTRKRGRRDLYDDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVAAVGGMDRVAVSLRTPSAASLLPGTD---GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGRGGARPFFTPTPMAGPRPALARGGWASLFASTAAATFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEATGPSDKAATVSAGSPAPAAATDS----SGAWWVDRPESVLRCLRELLLPSSSSSAE-------DGKRHGFDKRSGNGTADTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAKASTVRQEHGQEQRQEQPSAQEDFAAGLRGGLLEELTGKMRLLLRAGLSWGGDAEEDGGGGLMRVEMGLEEYISLVEDVHRAVEQTTRQKHDGLMQQRKNSREDGLGKLKERLRRLESKR 658
            MHKFNYRAVDLEGEILECPWVCRGCLRRSTSCGCPEGFPAWLDSDVGQARQSLFRRYNCRAGAAGCSFCRRGPGHLILLGEWARDVQAISEGIPPPSSRALLQTTPQ DRMGVLGDRTAIPDRLAPARAARAANALLRXXXXXXXXXXXX       XXXX AEGDQYARDYRLRVGGTRKRGRRDLYDDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    PAVAAV GMDRVAVSLRTPSAASLLPGTD   GXXXXXXXX                     XXXXXXXXXXX       XXXXXXXXXF RGGA PFFTPTPMAGPRPALARGGWASLFASTAAATF  XXX       XXXXXXXXXXXXXXXXXXXXXXXXXAPEATGPSDKA  VSAGSPAP          SGAWWV+RPESVLRCLRELL                DGKRHG+DKRSGNGTADT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   Q +AQEDFAAGLRGGLLE+L GKMRLLLRAGLSWGG+AE D GGG+MR+EMGLEEYISLVEDVHRAVE+TTRQKHD LMQ+RKNSREDGLGKLKERLRRLESKR
Sbjct:  153 MHKFNYRAVDLEGEILECPWVCRGCLRRSTSCGCPEGFPAWLDSDVGQARQSLFRRYNCRAGAAGCSFCRRGPGHLILLGEWARDVQAISEGIPPPSSRALLQTTPQ-DRMGVLGDRTAIPDRLAPARAARAANALLRXXXXXXXXXXXXEGGGLEDXXXXGAEGDQYARDYRLRVGGTRKRGRRDLYDDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PAVAAVAGMDRVAVSLRTPSAASLLPGTDDVGGXXXXXXXXQLAAVPTPATATGVTAPGAEAXXXXXXXXXXXALGAKAAXXXXXXXXXFSRGGAGPFFTPTPMAGPRPALARGGWASLFASTAAATFXXXXXAAVVKEDXXXXXXXXXXXXXXXXXXXXXXXXXAPEATGPSDKAMAVSAGSPAPXXXXXXXXXXSGAWWVNRPESVLRCLRELLXXXXXXXXXXXXXXXXDGKRHGYDKRSGNGTADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----QANAQEDFAAGLRGGLLEQLAGKMRLLLRAGLSWGGNAEGDRGGGVMRLEMGLEEYISLVEDVHRAVERTTRQKHDSLMQERKNSREDGLGKLKERLRRLESKR 814          
BLAST of mRNA_Ecto-sp13_S_contig817.19516.1 vs. uniprot
Match: A0A6H5JK20_9PHAE (Hist_deacetyl domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK20_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 9.800e-126
Identity = 450/700 (64.29%), Postives = 464/700 (66.29%), Query Frame = 0
Query:   57 YNCRAGAAGCSFCRRGPGHLILLGEWARDVQAISEGIPPPSSRALLQTTPQQDRMGVLGDRTAIPDRLAPARAARAANALLRXXXXXXXXXXXXXXXXXXXXXXXXAEGDQYARDYRLRVGGTRKRGRRDLYDDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------PAVAAVGGMDRVAVSLRTPSAASLLPGTDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------FGRGGARPFFTPTPMAGPRPALARGGWASLFASTAAATFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEATGPSDKAATVSAGSPAPAAATDSSGAWWVDRPESVLRCLRELLLPSSS-SSAEDGKRHGFDKRSGNGTADTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAKASTVRQEHGQEQRQEQP--SAQEDFAAGLRGGLLEELTGKMRLLLRAGLSWGGDAEEDGGGGLMRVEMGLEEYISLVEDVHRAVEQTTRQKHDGLMQQRKNSREDGLGKLKERLRRLESKR 658
            YNCRAGAAGCSFCRRGPGHLILLGEWARDV+AISEGIPPPS+RALLQTTPQ DRMGVLGDRTAIPDRLAPARAARAANALLRXXXXXXXXXXXXXXXXXXXXXXXXAEGDQYARDYRLRVGGTRKRGRRDLYDDAS                                             XXXXXXX                                                                                                   PAVAAV G+DRVAVSLRTP+ ASLLPGTD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        F RGGA PFFTPTPMAGPRPALA GGWASLFASTAA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                             AWWV+RPESVLRCLRELLL SSS SS++DGKRHG+D+R+GNGTADTA  XXXXXXXXXXXXXXXXXXX                     GGAKASTV QE            SAQEDFAAGLRGGLLEEL GKMRLLLRAGLSWGGDAE D G G+MR+EMGLEEYISLVEDVHRAVE+TTRQKHD LMQQRKNS+EDGLGKLKERLRRLESKR
Sbjct:   14 YNCRAGAAGCSFCRRGPGHLILLGEWARDVKAISEGIPPPSTRALLQTTPQ-DRMGVLGDRTAIPDRLAPARAARAANALLRXXXXXXXXXXXXXXXXXXXXXXXXAEGDQYARDYRLRVGGTRKRGRRDLYDDASAAAAGGTGAPAEAGLVKRGPGRPRLAERRGVSAGRGGSGSVGIVGXXXXXXXADPYGVERRPAWSGTVEVRLAFTGQRSVRLKLDNCPSSEARVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAVAAVAGIDRVAVSLRTPAVASLLPGTDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSRGGAGPFFTPTPMAGPRPALASGGWASLFASTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXAWWVNRPESVLRCLRELLLSSSSPSSSKDGKRHGYDRRNGNGTADTADAXXXXXXXXXXXXXXXXXXXSLLLETAGGCGGTPSTSA---GGAKASTVWQEXXXXXXXXXXXASAQEDFAAGLRGGLLEELAGKMRLLLRAGLSWGGDAEGDCGRGVMRLEMGLEEYISLVEDVHRAVERTTRQKHDSLMQQRKNSKEDGLGKLKERLRRLESKR 700          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig817.19516.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN85_ECTSI6.140e-20082.44Histone deacetylase superfamily n=1 Tax=Ectocarpus... [more]
A0A6H5JK20_9PHAE9.800e-12664.29Hist_deacetyl domain-containing protein n=1 Tax=Ec... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 127..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig817contigEcto-sp13_S_contig817:466..5970 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig817.19516.1mRNA_Ecto-sp13_S_contig817.19516.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig817 466..20673 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig817.19516.1 ID=prot_Ecto-sp13_S_contig817.19516.1|Name=mRNA_Ecto-sp13_S_contig817.19516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=658bp
MHKFNYRAVDLEGEILECPWVCRGCLRRSTSCGCPEGFPAWLDSDVGQAR
QSLFRRYNCRAGAAGCSFCRRGPGHLILLGEWARDVQAISEGIPPPSSRA
LLQTTPQQDRMGVLGDRTAIPDRLAPARAARAANALLRRQREQRQREMME
EGGGMEDEDGGGAEGDQYARDYRLRVGGTRKRGRRDLYDDASAAAAGGTG
ALAGAGLAAVAAAAAAKEAAVATAAAAAAGGAWHAEESSAEGGVGGGGGA
ATSTAAPAVAAVGGMDRVAVSLRTPSAASLLPGTDGGGGGGGDSDNQQLA
AVTTPAAATCVTAPGAEAAAGAAAPDSSSALGAKAAGSGGGGFGRGGARP
FFTPTPMAGPRPALARGGWASLFASTAAATFVPPTPAAVVEEDGGDTGGG
DGNGGSGTTAVTAKKKQQAPEATGPSDKAATVSAGSPAPAAATDSSGAWW
VDRPESVLRCLRELLLPSSSSSAEDGKRHGFDKRSGNGTADTAAAAGASP
PPPQPSSSSSALVSLLLETASGGGGGGGGTPSMSAGGAKASTVRQEHGQE
QRQEQPSAQEDFAAGLRGGLLEELTGKMRLLLRAGLSWGGDAEEDGGGGL
MRVEMGLEEYISLVEDVHRAVEQTTRQKHDGLMQQRKNSREDGLGKLKER
LRRLESKR
back to top