mRNA_Ecto-sp13_S_contig8168.19515.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8168.19515.1
Unique NamemRNA_Ecto-sp13_S_contig8168.19515.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8168.19515.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.240e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:  275 MALFGDEDGDVGPFVMAEVEGGDEWFPFSLDNLEMDRACNSSLQDDSRPMDQD 433
            MALFGDEDGDVGPFVMAEVEGGDEWFPFSLDNLEMDRACN+SLQDDSRPMDQD
Sbjct:    1 MALFGDEDGDVGPFVMAEVEGGDEWFPFSLDNLEMDRACNASLQDDSRPMDQD 53
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8168.19515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ51_ECTSI1.240e-2598.11N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECT... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8168contigEcto-sp13_S_contig8168:5619..7029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size518
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464088.6218522-UTR-Ecto-sp13_S_contig8168:5618..58921681464088.6218522-UTR-Ecto-sp13_S_contig8168:5618..5892Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8168 5619..5892 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464088.6332529-CDS-Ecto-sp13_S_contig8168:5892..60481681464088.6332529-CDS-Ecto-sp13_S_contig8168:5892..6048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8168 5893..6048 +
1681464088.6442773-CDS-Ecto-sp13_S_contig8168:6942..70291681464088.6442773-CDS-Ecto-sp13_S_contig8168:6942..7029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8168 6943..7029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8168.19515.1prot_Ecto-sp13_S_contig8168.19515.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8168 5893..7029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8168.19515.1

>prot_Ecto-sp13_S_contig8168.19515.1 ID=prot_Ecto-sp13_S_contig8168.19515.1|Name=mRNA_Ecto-sp13_S_contig8168.19515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MALFGDEDGDVGPFVMAEVEGGDEWFPFSLDNLEMDRACNSSLQDDSRPM
DQDGDGETDQDDDVDAGNPSAEASGPGPPPP
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mRNA from alignment at Ecto-sp13_S_contig8168:5619..7029+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8168.19515.1 ID=mRNA_Ecto-sp13_S_contig8168.19515.1|Name=mRNA_Ecto-sp13_S_contig8168.19515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8168:5619..7029+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAGCCCGGCAGATACGTACGTGGGTATTTGTGGTTTGAGTCCGAGTTC
AGAGGGCAACAACACCCTAGATGACGCGAGCATAAACAACGCCCCATCTC
ACGAGAGCGAGAGCACAGAGTGAGGCCGAGAAACGCCCCGCGAGACCACA
GAAAGATAAGGAGGGCGGGGGAGGTAGACACCTCTGCGACGCAAGCGTTT
TTTGGAAGCGAGTAGAGCGGAGGGAGGCAGGGACGGGGGTGGAAAAAGGG
AGAGCTGGAGAAGAAGCACGGCAAATGGCCTTGTTTGGTGACGAGGATGG
TGATGTGGGCCCGTTCGTCATGGCGGAAGTGGAGGGAGGCGACGAGTGGT
TTCCCTTTTCGCTAGACAACCTGGAGATGGACCGCGCGTGCAACTCCTCG
TTGCAAGATGACTCGAGACCTATGGACCAGGTACGGATGTGCTTTCAAGT
TTTCTCCATGGGGCAGGCAGGCCGGAGCAAGACTTGTTCTTTTACCCAGA
AAATGCACGTCCTCTCCTCGCGTGGGTTCTAGACTGTTTGCAGTCGAGAA
GTCTACGCACGAACCCAAAGCGCACCACCAAACGAGAGTGGCTTCTGCGC
TCTGTTGCGTGTGTTGCCGATAAGTAGAAGGCCCCAAGGCACCTAGTTCA
CCGAGCTTCACTCTCTCGCCTGTTTGCCTGGGTGTCTCAACAAACCAGAA
AAACGCATCGAGGCCCGAGGGCTTGAGTTTTTTTTTTCCATCAGAAAGAT
CCCGTCTTCGCGTATTGAACGTGCGTACACGCCAGCAGCAGGGCAGCACA
AGCACCACCAGAATCCCTCTCCGCCGTTCGGTCCGTAGGGTCGTCTTGCG
TGGCGGCCCGAGTATGTTGCCCTCGTCTGTTACTGCTGCTGCTGCTTCGC
GAGGATTTAAATCGTCCGCACGGCAGTGTCTTAGTGCGTGTGTTGTCAAC
GCATTCGCAAATTCAACAAGAGAGAGCCTCTCGCCACGACGTTGAAGTAC
ATTCTCGATCACAGGGTTGGGACGGGCGGGGGGGGGGGGTGTACTCATGG
AAAACGAATTCCGTAGGACATCGACCTCGCACCCCTACAATGCCGGGACG
GAGCAATATGCAGGTGTTTGGCCGGCCCAGGCTGCGTTTCTCATCATCCA
TGCGACCGTGGGGTGGGGGGGGATATATATTTGGAGAAAAGAAACCATGC
TCTCCCTGCTGAACCTGATGTGTGCGACTTCTCCTGTACCCATTTTTTTT
TTAGCGTGCATGCAGCGAACGCCTTATTATTATTTCCCACCTCAATCCCA
TGTGCACGTGTTCCCCGTATGTAGGATGGCGACGGAGAGACCGACCAAGA
CGACGACGTCGACGCCGGAAACCCTTCCGCGGAGGCGTCCGGTCCAGGAC
CACCACCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8168:5619..7029+

>mRNA_Ecto-sp13_S_contig8168.19515.1 ID=mRNA_Ecto-sp13_S_contig8168.19515.1|Name=mRNA_Ecto-sp13_S_contig8168.19515.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8168:5619..7029+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTTGTTTGGTGACGAGGATGGTGATGTGGGCCCGTTCGTCATGGC
GGAAGTGGAGGGAGGCGACGAGTGGTTTCCCTTTTCGCTAGACAACCTGG
AGATGGACCGCGCGTGCAACTCCTCGTTGCAAGATGACTCGAGACCTATG
GACCAGGATGGCGACGGAGAGACCGACCAAGACGACGACGTCGACGCCGG
AAACCCTTCCGCGGAGGCGTCCGGTCCAGGACCACCACCGCCG
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