mRNA_Ecto-sp13_S_contig8161.19506.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8161.19506.1
Unique NamemRNA_Ecto-sp13_S_contig8161.19506.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: D8LRG7_ECTSI (Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.630e-23
Identity = 60/87 (68.97%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    4 NKIFKSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSALAR 264
            NKIFKSENDTHEFVAYFQKEMETKDG+ISKLNDELIRKE                        RA+KEKALTNQIKNLEGDLSAL R
Sbjct:   45 NKIFKSENDTHEFVAYFQKEMETKDGIISKLNDELIRKE------------------------RANKEKALTNQIKNLEGDLSALVR 107          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: A0A7S2UZS8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.440e-10
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    7 KIFKSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            K+ KSE DTHEFVAYFQ+EME KD +I+ L D L++KE E R   +        +L E+T    DKE+ L +++K ++ +L  L
Sbjct:   65 KLAKSEKDTHEFVAYFQREMENKDEIIANLKDNLVQKEVEFREEGQRKXXXXXEKLEEVTRGAGDKEEDLKSEVKRVKDELDKL 148          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: A0A482URU8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482URU8_9ARCH)

HSP 1 Score: 53.9 bits (128), Expect = 1.050e-6
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   19 SENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            +E DTH+ V YFQ+EME KD +I +LN+EL++ +++++  V+  ++  + EL+EL      +   LT Q+ N E +L A+
Sbjct:   52 NEKDTHDIVLYFQREMEIKDEIILRLNEELVKCQTQLKFEVEKARKAFEEELSELRYSTDTRIAHLTAQLANAEQELKAI 131          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: A0A7S3M092_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M092_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.040e-6
Identity = 28/80 (35.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   19 SENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            +E DTH+ V YFQ+EME KD VI KLN+EL++ +++++  V+ +++  + EL E+         +L+ +++  E +L A+
Sbjct:   45 NEKDTHDIVIYFQREMEIKDDVIMKLNEELVKCQTQLKFEVEKVRKTFEEELTEIRTTSESTITSLSEKLETCESELKAV 124          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: A0A2P4WYB7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WYB7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.850e-5
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   16 KSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            K E +THEFVAYFQKE++T+D  ++KL +EL        + ++ LQ+    E   L ++ A KE+A + QI  L  +L  L
Sbjct:   54 KREQETHEFVAYFQKEIQTRDKQLTKLGEELAAARLSHALAIEQLQQARDTERQHLIQQAAAKEEAASEQIFYLREELHQL 134          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: D0MT67_PHYIT (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=D0MT67_PHYIT)

HSP 1 Score: 50.4 bits (119), Expect = 3.560e-5
Identity = 31/81 (38.27%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   16 KSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            K E +THEFVAYFQKE++T+D  ++KL++EL        + ++ LQ+    E   L ++ A KE+A + Q+  L  +L  L
Sbjct:   51 KREQETHEFVAYFQKEIQTRDKQLTKLSEELAAARLSHALALEQLQQARDAERQHLIQQAAAKEEAASGQVFYLREELHQL 131          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: A0A225WP37_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WP37_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 3.560e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   16 KSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            K E +THEFVAYFQKE++T+D  ++KL +EL        + ++ +Q+    E   L ++ A KE+A + QI  L  +L  L
Sbjct:   54 KREQETHEFVAYFQKEIQTRDKQLTKLGEELAAARLSHALAIEQMQQARDTERQHLIQQAAAKEEAASEQIFYLREELHQL 134          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: G4ZE37_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZE37_PHYSP)

HSP 1 Score: 50.4 bits (119), Expect = 3.560e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   16 KSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            K E +THEFVAYFQKE++T+D  ++KL +EL        + ++ +Q+    E   LT++   KE+A + QI  L  +L  L
Sbjct:   56 KREQETHEFVAYFQKEIQTRDKQLTKLGEELAAARLSHALALEQMQQARDSERQHLTQQAVAKEEAASEQIFYLREELHQL 136          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: A0A662WS35_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WS35_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.870e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   16 KSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            K E +THEFVAYFQKE++T+D  ++KL +EL        +T++ +Q+    E   LT++ A  E+A   Q+  L  +L  L
Sbjct:   54 KREQETHEFVAYFQKEIQTRDKQLTKLGEELATVRLSHALTLEQMQQTRDAERQHLTQQAAANEEASAEQLFYLREELHQL 134          
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Match: A0A8J5MGW1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MGW1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.910e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   16 KSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHLQEKAQRELAELTEKRADKEKALTNQIKNLEGDLSAL 258
            K E +THEFVAYFQKE++T+D  ++KL +EL        + ++ +Q+    E   L ++ A KE+A + QI  L  +L  L
Sbjct:  659 KREQETHEFVAYFQKEIQTRDKQLTKLTEELAAARLNHALALEQMQQARDAERQHLIQQAAAKEEAASEQIFYLREELHQL 739          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8161.19506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LRG7_ECTSI1.630e-2368.97Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A7S2UZS8_9STRA3.440e-1044.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482URU8_9ARCH1.050e-637.50Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3M092_9STRA4.040e-635.00Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A2P4WYB7_9STRA1.850e-539.51Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
D0MT67_PHYIT3.560e-538.27Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A225WP37_9STRA3.560e-538.27Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
G4ZE37_PHYSP3.560e-538.27Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A662WS35_9STRA4.870e-538.27Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A8J5MGW1_9STRA6.910e-538.27Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8161contigEcto-sp13_S_contig8161:749..1765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score104.4
Seed ortholog evalue2.8e-20
Seed eggNOG ortholog2880.D8LRG7
Preferred nameCCDC176
Model size267
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
EggNOG free text desc.motile cilium assembly
EggNOG OGs28J0W@1,2QRCW@2759
Cds size267
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.8972468-CDS-Ecto-sp13_S_contig8161:748..8681681464087.8972468-CDS-Ecto-sp13_S_contig8161:748..868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8161 749..868 +
1681464087.910248-CDS-Ecto-sp13_S_contig8161:1184..12561681464087.910248-CDS-Ecto-sp13_S_contig8161:1184..1256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8161 1185..1256 +
1681464087.921174-CDS-Ecto-sp13_S_contig8161:1690..17651681464087.921174-CDS-Ecto-sp13_S_contig8161:1690..1765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8161 1691..1765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8161.19506.1prot_Ecto-sp13_S_contig8161.19506.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8161 749..1765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8161.19506.1

>prot_Ecto-sp13_S_contig8161.19506.1 ID=prot_Ecto-sp13_S_contig8161.19506.1|Name=mRNA_Ecto-sp13_S_contig8161.19506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
QNKIFKSENDTHEFVAYFQKEMETKDGVISKLNDELIRKESEMRVTVKHL
QEKAQRELAELTEKRADKEKALTNQIKNLEGDLSALAR*
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mRNA from alignment at Ecto-sp13_S_contig8161:749..1765+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8161.19506.1 ID=mRNA_Ecto-sp13_S_contig8161.19506.1|Name=mRNA_Ecto-sp13_S_contig8161.19506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8161:749..1765+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACAAGATCTTCAAGTCAGAGAACGATACGCATGAGTTCGTGGCCTA TTTCCAGAAGGAGATGGAAACTAAGGATGGCGTGATCTCAAAGCTCAATG ATGAACTCATACGGAAAGAGGTAGGGAGTTCAGCATCACAGAGCCAGAGG GTTTGTACCCTCTTTCTTGTTGATTCTGGCAGAGTTGTTTGGGGGGTGGG GTGGATCCAAAAAATGGCTGCTGTTGTAGTACTGTTGCCATTGCCATTGA AACCTACAGCCTCTACATAATTTGTATCTCACGCTCCACCGTGCCCGCCG GGGTTTAGTGAGTAATGAAGCAAGACAATCGACAATGTGCAATCTCCTTT CCAAGCTAGAGGGATGGGCTTCACGTCTCTGGTAACCTCGCATTCCTCTC AACTCCTTGCCACTCCTGCGCGTCATCTTGCACCAGTCGGAAATGCGAGT GACGGTGAAGCATTTGCAGGAAAAGGCACAACGCGAGTTGGCGGAATTGA CAGAGAAGGTCAGTCAGGCCGGACAAGGCAAAACCTCAGGGGACAGTAAG AGTTGAGTGTGCTTTTCAGTGCCTGCTCAAGCCACGCCGGCGACCGTGTA CACCACGTACGGCGGTTATTTGCATTGGTCCCGCAAGTATTGACTCCAGG GTATTGTTATCTTGGGTCTGCGAGTACAAACAGCTGGAGGCGAACGTCAC CACGGTGCCGTTCAGCTTCATAAAAACAGCACAGAAGGAAGCAGATTCAC GGAGTTTTCATTTTGTGCAACGGGCACTGTATGGACTATGTCTTAACGTG GTTTCGAGTTAGATATTGGACATTTCGGAGTAAGGTCGGAACCATCTTCC AAACAGGTCCCTATCTGCACACTCAGCAGCATACGCTGATTCTACCCGTG GAAATTCGCCCAACCAACCCCGTCCCATTTTTCTCACCCCAGAGGGCAGA CAAAGAAAAGGCGTTGACCAATCAGATCAAGAACCTAGAGGGAGACCTGT CTGCATTAGCGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8161:749..1765+

>mRNA_Ecto-sp13_S_contig8161.19506.1 ID=mRNA_Ecto-sp13_S_contig8161.19506.1|Name=mRNA_Ecto-sp13_S_contig8161.19506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8161:749..1765+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAACAAGATCTTCAAGTCAGAGAACGATACGCATGAGTTCGTGGCCTA
TTTCCAGAAGGAGATGGAAACTAAGGATGGCGTGATCTCAAAGCTCAATG
ATGAACTCATACGGAAAGAGTCGGAAATGCGAGTGACGGTGAAGCATTTG
CAGGAAAAGGCACAACGCGAGTTGGCGGAATTGACAGAGAAGAGGGCAGA
CAAAGAAAAGGCGTTGACCAATCAGATCAAGAACCTAGAGGGAGACCTGT
CTGCATTAGCGAGGTAA
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