mRNA_Ecto-sp13_S_contig8157.19501.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8157.19501.1
Unique NamemRNA_Ecto-sp13_S_contig8157.19501.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: D7FMP2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP2_ECTSI)

HSP 1 Score: 285 bits (730), Expect = 1.030e-93
Identity = 143/156 (91.67%), Postives = 146/156 (93.59%), Query Frame = 1 
Query:   55 SDGVTARTPAWVPAGVLRRRGGSFRGGGGLFAELQSGEEEVPLVQAICDELVAVTDPEGEARMGSDSPVISKARRGVLRLMDKLQPRDLGLSERDFQGLTHSLCMPIFGGPEACFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYDVEE 522
            +D V ARTPAWVP GVLRR GGSFRGGGGLFAELQSGEEEVPLVQAICDELVAVTDPEGEARMGSDSPVISK    VLRLMDKLQPRDLGLSERD QGLT SLCMP+FGGPEACFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYD+EE
Sbjct:   39 TDEVAARTPAWVPGGVLRRGGGSFRGGGGLFAELQSGEEEVPLVQAICDELVAVTDPEGEARMGSDSPVISK----VLRLMDKLQPRDLGLSERDLQGLTQSLCMPVFGGPEACFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYDMEE 190
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: A0A7S3WF87_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WF87_9SPIT)

HSP 1 Score: 72.0 bits (175), Expect = 2.620e-13
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:  280 GVLRLMDKLQPRDLG-------LSERDFQGLTHSLCMPIFGGPEACFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYDVEE 522
            G    MD+L P  +G       ++ R   G+ H   + +F   +A F M +FVLP G +IPLHDHP M VLS++L+GTL VTSYD  E
Sbjct:   16 GAQAAMDELTPGCVGFDTFPPPVTARTPSGVPHVSYVHLFS--DAAFSMGIFVLPAGAKIPLHDHPEMTVLSKLLYGTLQVTSYDTGE 101
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: UPI001FB19433 (plant cysteine oxidase 5-like isoform X1 n=2 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB19433)

HSP 1 Score: 67.0 bits (162), Expect = 2.700e-10
Identity = 40/105 (38.10%), Postives = 56/105 (53.33%), Query Frame = 1 
Query:  241 MGSDSPVISKARRGVLRLMDKLQPRDLGLSER-----------DFQGLTHSLCMPI-FGGPEAC--FEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYD 513
            +  D PV  +    +  L+DK++P D+GL +            + +  TH    PI +     C  F M +F +P    IPLH+HPNM VLS++LFGTL VTSYD
Sbjct:   15 LSQDGPVSEEGLVKIRGLLDKIKPSDVGLEQEAQLVRTWTDPTNGRNGTHRSTPPIKYLRLSECESFTMGIFCMPPSSIIPLHNHPNMTVLSKLLFGTLHVTSYD 119
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: A0A7S0LJF8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LJF8_9EUKA)

HSP 1 Score: 65.1 bits (157), Expect = 1.830e-9
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:  388 EACFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYDVEE 522
            +A F M +FVLP G  IPLHDHP+M VLS+++FG L VTSYD+ E
Sbjct:   98 DARFSMGIFVLPAGSSIPLHDHPHMTVLSKLIFGALHVTSYDLPE 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: A0A8B8K5I6_ABRPR (Cysteine dioxygenase n=2 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8K5I6_ABRPR)

HSP 1 Score: 64.3 bits (155), Expect = 2.980e-9
Identity = 43/133 (32.33%), Postives = 67/133 (50.38%), Query Frame = 1 
Query:  175 VPLVQAICDELVAVTDPEGEARMGSDSPVISKARRGVLRLMDKLQPRDLGLSE-----RDFQGL------------THSLCMPI-FGGPEAC--FEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYD 513
            +P+VQ + D  +    P+G        P+  +A   V  L+D+L+P ++GL +     R ++G              H   +PI +     C  F M +F +P G  IPLH+HP M VLS++L+G+L V SYD
Sbjct:    1 MPIVQQLYDNCMTSLSPDG--------PISEEALEKVRTLLDELKPSNVGLEQEAQLARGWKGSLNGTNGKKGRNGNHQYPLPIKYIHLHECDKFSMGIFCMPPGSIIPLHNHPGMTVLSKLLYGSLHVRSYD 125
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: A0A6G0XQ21_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQ21_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.390e-9
Identity = 46/142 (32.39%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:  166 EEEVPLVQAICDELVAVTDPEGEARMGSDSPVISKARRGVLR--------------------LMDKLQPRDLGLSERDFQGLTHSL-----CMPIFGGPEACFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYDV 516
            EE +P   ++ +E VA    +  A  G +  +I   +R VL+                    L D+L P DLGL     Q +  S         I    +A   M +FVLP G  IPLH+HP MAV+SR+L+G++ V +YD+
Sbjct:    8 EETIPFTISLHEEAVASPSSKKAAGNGVEMHLIQAIQRAVLQTIKRTGGRAFEMNDILPIKELCDRLLPSDLGLEIPKPQKVAESPRRLRPIQYIEVYEDAQVSMGIFVLPPGTSIPLHNHPQMAVISRVLYGSMQVNAYDL 149
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: UPI001FB170E4 (plant cysteine oxidase 4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB170E4)

HSP 1 Score: 63.5 bits (153), Expect = 5.330e-9
Identity = 41/107 (38.32%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:  241 MGSDSPVISKARRGVLRLMDKLQPRDLGLSERDFQGLTHSLCMPIFG--GPE--------------ACFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYD 513
            +  + PV  +    V  L+DK++P D+GL E++ Q L  S   PI G  G E              A F M +F +P    IPLH+HP M VLS++++GTL VTS+D
Sbjct:   15 LSQNGPVSEEGLEKVRSLLDKIKPSDVGL-EQEAQ-LVRSWNGPIHGRNGTERSTPPIKYLHLHECADFSMGIFCMPPSSIIPLHNHPGMTVLSKLVYGTLHVTSFD 119
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: UPI0020246C98 (plant cysteine oxidase 5-like isoform X2 n=2 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI0020246C98)

HSP 1 Score: 62.8 bits (151), Expect = 6.810e-9
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:  235 ARMGSDSPVISKARRGVLRLMDKLQPRDLGLSE-----RDFQGLTHSLCMPIFGGPEAC-------------FEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYD 513
            A    + PV  +A   V  ++DK++P D+GL +     R++ G  H       GGP++              F + +F +P    IPLH+HP M VLS++++G+L V SYD
Sbjct:   14 AAFSPNGPVSEEAIEKVRAMLDKIKPSDVGLEQEAQWVRNWSGTVHERN----GGPQSLPPIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLIYGSLFVNSYD 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: A0A6P4AX05_ZIZJJ (Cysteine dioxygenase n=3 Tax=Rhamnaceae TaxID=3608 RepID=A0A6P4AX05_ZIZJJ)

HSP 1 Score: 62.8 bits (151), Expect = 1.010e-8
Identity = 36/111 (32.43%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:  235 ARMGSDSPVISKARRGVLRLMDKLQPRDLGLSE-----RDFQGLTHSLCMPIFGGPEAC-------------FEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYD 513
            A    + PV  +A   V  ++DK++P D+GL +     R++ G  H       GGP++              F + +F +P    IPLH+HP M VLS++++G+L V SYD
Sbjct:   14 AAFSPNGPVSEEAIEKVRAMLDKIKPSDVGLEQEAQWVRNWSGTVHERN----GGPQSLPPIKYLHLHECDSFSIGIFCMPPSSIIPLHNHPGMTVLSKLIYGSLFVNSYD 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Match: A0A484M689_9ASTE (Cysteine dioxygenase n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484M689_9ASTE)

HSP 1 Score: 62.8 bits (151), Expect = 1.010e-8
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:  232 EARMGSDSPVISKARRGVLRLMDKLQPRDLGLSERDFQGLTH--SLCMPIFGGPEA-------------CFEMTVFVLPKGGEIPLHDHPNMAVLSRILFGTLDVTSYD 513
            +A + ++ PV  +A   V  ++DK++P D+GL E+D Q + +  +      GGP++              F M +F +P    IPLH+HP M VLS++++G+  V SYD
Sbjct:   12 KASLSTNGPVSEEALEKVRSILDKIKPSDVGL-EQDAQAVRNWNASARQRNGGPQSPPPIKYIHIHECESFTMGIFCMPPSSIIPLHNHPGMTVLSKLIYGSFYVKSYD 119
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8157.19501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMP2_ECTSI1.030e-9391.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3WF87_9SPIT2.620e-1344.32Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
UPI001FB194332.700e-1038.10plant cysteine oxidase 5-like isoform X1 n=2 Tax=I... [more]
A0A7S0LJF8_9EUKA1.830e-962.22Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A8B8K5I6_ABRPR2.980e-932.33Cysteine dioxygenase n=2 Tax=Abrus precatorius Tax... [more]
A0A6G0XQ21_9STRA4.390e-932.39Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI001FB170E45.330e-938.32plant cysteine oxidase 4-like n=1 Tax=Impatiens gl... [more]
UPI0020246C986.810e-932.43plant cysteine oxidase 5-like isoform X2 n=2 Tax=Z... [more]
A0A6P4AX05_ZIZJJ1.010e-832.43Cysteine dioxygenase n=3 Tax=Rhamnaceae TaxID=3608... [more]
A0A484M689_9ASTE1.010e-833.03Cysteine dioxygenase n=3 Tax=Cuscuta sect. Cleisto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8157contigEcto-sp13_S_contig8157:2..4372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score286.2
Seed ortholog evalue1e-74
Seed eggNOG ortholog2880.D7FMP2
Model size525
KEGG rclassRC00114,RC00404
KEGG koko:K00030,ko:K10610,ko:K10712
KEGG ReactionR00709,R02467
KEGG Pathwayko00020,ko00430,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,ko03420,ko04120,ko05161,ko05203,map00020,map00430,map01100,map01110,map01120,map01130,map01200,map01210,map01230,map03420,map04120,map05161,map05203
KEGG ModuleM00009,M00010,M00385,M00386
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003032,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006091,GO:0006464,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009061,GO:0009593,GO:0009628,GO:0009987,GO:0015980,GO:0018158,GO:0018171,GO:0018193,GO:0018198,GO:0019538,GO:0036211,GO:0036293,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0050896,GO:0051606,GO:0055114,GO:0070482,GO:0070483,GO:0071704,GO:1901564
Exons5
EggNOG free text desc.cysteamine dioxygenase activity
EggNOG OGsKOG4281@1,KOG4281@2759
Ec32 ortholog descriptionADO/CDO cysteamine dioxygenase
Ec32 orthologEc-23_001060.1
EC1.1.1.41,1.13.11.19
Cds size525
COG Functional cat.CE
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.6207027-CDS-Ecto-sp13_S_contig8157:1..661681464087.6207027-CDS-Ecto-sp13_S_contig8157:1..66Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8157 2..66 -
1681464087.6466093-CDS-Ecto-sp13_S_contig8157:867..9821681464087.6466093-CDS-Ecto-sp13_S_contig8157:867..982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8157 868..982 -
1681464087.6587994-CDS-Ecto-sp13_S_contig8157:1439..15021681464087.6587994-CDS-Ecto-sp13_S_contig8157:1439..1502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8157 1440..1502 -
1681464087.6708539-CDS-Ecto-sp13_S_contig8157:3498..36091681464087.6708539-CDS-Ecto-sp13_S_contig8157:3498..3609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8157 3499..3609 -
1681464087.6847405-CDS-Ecto-sp13_S_contig8157:4201..43721681464087.6847405-CDS-Ecto-sp13_S_contig8157:4201..4372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8157 4202..4372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8157.19501.1prot_Ecto-sp13_S_contig8157.19501.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8157 2..4372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8157.19501.1

>prot_Ecto-sp13_S_contig8157.19501.1 ID=prot_Ecto-sp13_S_contig8157.19501.1|Name=mRNA_Ecto-sp13_S_contig8157.19501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
MPGCSASCRKQRVCVGFASDGVTARTPAWVPAGVLRRRGGSFRGGGGLFA
ELQSGEEEVPLVQAICDELVAVTDPEGEARMGSDSPVISKARRGVLRLMD
KLQPRDLGLSERDFQGLTHSLCMPIFGGPEACFEMTVFVLPKGGEIPLHD
HPNMAVLSRILFGTLDVTSYDVEEE
back to top

mRNA from alignment at Ecto-sp13_S_contig8157:2..4372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8157.19501.1 ID=mRNA_Ecto-sp13_S_contig8157.19501.1|Name=mRNA_Ecto-sp13_S_contig8157.19501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8157:2..4372- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGCTGCTCCGCATCGTGCCGGAAACAACGTGTCTGTGTGGGGTT
CGCAAGCGATGGGGTTACTGCGAGAACCCCGGCATGGGTACCCGCAGGGG
TTTTGAGGAGACGGGGAGGCTCGTTTCGTGGTGGCGGCGGGTTGTTTGCG
GAACTACAGTCCGGCGAAGAGGTGAGCAGCTTCGCCAAAGCGCTGGAAAT
TGTTGTGGTTTTTCACCACTCGGAAAAACAGTTCGCCAATGTTCTCAATG
AGAAACGATCATCGATCATCACATCATTTATGGAGCGCTGTTCTCTTACG
ACGATAATTGTCGTTTTCCCTGAAAAAAAACGCGTTTTTGATTGCCGGAG
CCCTGCCTCTGCTTTTGGAAGTCTGGAGCGACAAAGTTTGGGCAACAGAG
GGTTGAGTTTTTTCCGGAACAACATGGGTTGCGTTTCATCCTCTCCCCAG
CTTGGTGCTGTTGTTGTTGTTACTGTTGTACTGCTGCTGCTGCTGCTTCT
GCCGCTACTTTCTTGCTTAAAAATCATCCCGGTAGTGCAGCCCGTGGTCG
CCAGCCAGGCACCAAAAAGATATGCAGTAGGAATGAGGGTGAGGGAAGTC
TAAAATTTCGAAGTTTCCAACAGTTACATTCATGCACCCACTAAAAATAA
CAATCGCACCGCCCGCAAGATGGGGTCAATCTAAAGTCTAAAAAGCAAAG
ACCTCGTTTTAGAACCAACCGTTGTCAAAACACCTGCCGTTCGTGGTGTG
ACACCGCCGGCAGGAGGTGCCGCTGGTGCAGGCCATCTGCGACGAGCTGG
TTGCCGTCACGGACCCGGAGGGGGAGGCGCGGATGGGATCTGACAGTCCC
GTCATATCGAAGGCAAGGCGTGGTGTGTGAATGGCATCGGTTCTTTGCCA
ACCAGCTTTATTCGTTTATGTTGAAAGGTTGGTGGCAAAGCCACGTCGGT
TTCGCCGAGTTTTTTTCTTTTTCTCTTCTCTTCAAGTCAGCGCTCACAGC
ACTTGTGCCGTTTTTCTCGAACCCGTGGTCACACAGAAGGGTTCCTCTCC
GTTAGGCCCCCTACCCATCCCTTCTACGGTACTTTGCCTCGATTCTCAAA
GAAAAAAAAAATACATGGTACACAGTAGTGGTCGGCACTCAAGTTTGAAC
CGGCATTGAAGAACCCGCTGTGTGGGGAGAGGAGGGTGTTCGAAGGAATT
GTGATGAAGCTATCGCTAGACGGGTTACCTCCGGCAATGAGAAAAATTCC
TTGCCCATTCAAGCCCCCGCTTTCAGTGGTCCCGCTGTGGGATGGCATCG
GCACCAGCTTCCATTCGATGGAAGGCGCGCACGATGCCTGGCGTCGTCTC
GGCAGGAACACCAAGCGCGATCTGTGGCCGGAAAAATGCGAGGCCGAGTC
ACCATCGAAACCAAAAAGTTTATTCCGCGGCTTGTGACTCCGCAAGGTTC
AAGGATCGTCTGTGTTGTGACCGGAGAACATGGAGGGGCCGGGAAAATTT
ACTGCACTATCCGTGCTGCTACGGCCACATTCGAAACAGGACTAGTCTTG
ACCCCCACCAATAGCTTGCGCACGTCCTACACAAATCTGCCATCCGGGTG
GAGTGTAAAGACCGTTGACCACCAGCTCGGATTCTACCTGAGTGATGATT
CTTACGTGAAGAAGACGACGGGATCGATACGAACGCTCAAGGTCGACGTA
ATCATCATCGAAGAAGCCGCTTATATGCCTCTCCGGACCTGAAGCATAAT
CCTGGCGGCTGCCCATAGCAGCGGTACCCACGTGATCGGGACATACGACA
CGCATCAACTCCAGCCCGTTTGCGATAGCAGCGGCATGTCGATTAGCAGC
GACAATGCCGACAGTGAGGTCATCCTCGAAAAAGCCTTCCCCACGTGCTT
CCATGTCTTCGCGCGCGCGAGCGAGACAAAACTATCAAAGACCAGGTGGA
GATGGATGACGACCTCTTGCACATTCTGGCCACAGGAAACGATAGTAACG
AGGCGCAGACTCGAGCCATCGAGAGGTTTTGTGGTGATTGCCCAAAGGCT
GACGACCCCAGCCCTTCAGATTTTCACCTCGCGTTTACAAGAGAATGTGC
TCGATTCCACGCCTTTCGAGGCTTGCTGGGGTGCAACGAAGCTGGGGACT
GGGATGGGCTGGGGTGTCGGACGGTGGTTGGTGCGCAATGACCGCATGAA
TTAAGCTGGTCGCCTGTATGAAGCCCGTGATTTTTCCCGAGACACAAGTG
GAATATCGAGACACCAATCGAATGTTACTATTCAAGTTGTCTCTTATCGT
CGAAAAGTGCGGGGTGCCCCGTGCAAGGTCGGCGAAATCCCTTGGTACTC
ACTCACTATTCGGCCTTTACACAGTACAGCACTGCTGTTCATGTTTGATT
GTTGCGTGCCGCACACTTTTGAGGGAAAAGAGTATTCTTGTCGCGTTATA
AGTCGAAGGCAAGGCCCGGCAGGAGAGGTGGAGGGAGAGGGACTCTTCTG
TGTCACTGACCGCGGATTGCAGCCAGCTCTTTCACGGGAAGAATGCTGTG
TGGCGTGAGCGCTGATTTAAAGAAAATCATGAGAAAAAAAAAGGCGTCTG
TGAGCATTGGTTGGCGTGATCGATATGAGCCTCATTTGTTTTGGCCGTTC
GACTCCGGAAGATGACCGTCTGCGCACGTCGCGTGCCGAACGCGAGGCGA
GATGTGAGTTCACGTGCTTTCAAACGTCGCACACAAGAAGGGGAAAGGTT
TAGCTTCTCGCAACGATTTTGTTTGTAGTTCTCCGACAATACCCATTTTG
TGTGAGGCCTGTGCTCGCCGCTCATGCCTCCCCTACCCTCATGTACCCAT
TGTCATTAATTGGGGCGCAGGTACTTAGACTAATGGACAAGTTGCAACCA
CGAGATCTGGGGCTGTCAGAGCGGGATTTCCAGGTAAGAGGCATCGTAGG
GTCGGAAGACGGTAGGTAAATCCGCGTACGAAGCGGGTGGAAGGCTCGTT
TTTTTACTCGTTGTCCACCTCTCACGTCGGCGATGGATTGTTGCTTCGTT
GGATTGAAAAGGACGGCGAGGGAGGTATTCAGTAAGCGTCCGAATTAGAC
CATACGCATTGAAGACGGCAGCAGCAACAACTTCAACCATCATACCAGTA
CCGTCGTCGTCAACGACAACAATGGCAACAACATGTCAACCCAAAAAAAA
AGTAACAACACCAACAGCAGCAGCAGCAGCAGCAGCATCATCGAAAACAG
CAATGCGAAAGCAAAACAGCAACGGCAGCAGCAGAAGCAGCTGCGGCCGA
GCCACAACAACACAACCGATTCTTCCCTTCGTCTCTCACTCAGAAACACC
GCTCCATCTCTCCGGCGTGCTGACCCCTCTCCTACCCCAGGGGCTGACGC
ACTCGCTGTGCATGCCGATTTTCGGCGGGCCGGAGGCGTGCTTCGAGATG
ACCGTCTTCGTGCTGCCCAAGGGCGGCGAGATTCCTCTGCACGATCACCC
CAACAGTGAGCTTGATTTTGGTTTGTTTCGTGTGTGTTGTGTGCTTGTGC
GCGCGTGGGAGTACCCCCGTATGTAGAGAGGAGAACCGCACTTCATGGTG
CATGCATAACCCGTTGGAAGAGGCAAATAGTTCGTTGTTACTGTGACAGC
GAGTTGCTTCGAAACCGATCACAAAGCGCCACAGAATCGAGTAGCGAAAA
AGGGCCCCCGCGACTAATACAGCGAGTGCTCCCAGAAAAGGGTTGCAGAA
GCGAGAGAGACGATCGCCGTGTACGTAATAATACCAGTGAATGACGATGT
TCCCGCTGCGCGTGTTGAACAAGCCTCGAGAGTTTACACCCTGGGACATG
CACGGCAGTTTGTCCATGGGGCTGCCTCTCAGCCTGGCTCTTTCACTCTC
GCACGCTGTTTTTGTTGTGCTGGCATTATTTTTCTGTTCGATATCCTTGT
TGCTTTTTCGGACGTGAATTTTCGCGTTGTGGGGTAGTTGGTTGCCCTTC
GACCCCGGAAGGGGGCCGCGTCAGTTGAAACGATATTAGAATATGAGGAG
ACAGCGGGAAAGACCGGATGGGTTTAGACGACGATAACAACAACATCAAA
CAACAACAACAGCAGCAGCAGCAAAAACAACAAAGACAATTAACAACAAC
AACCACAACAACAGCAGCAGCAACAACAACAACAACAACAACAACAACAG
CAGCAGCAGCAACAACATCAACAACAACAACAGCAACAACAGTAACAGCA
ACAACAACATCTTCCCGTTTCTCCCGCTCCACCACCACCACGAAAAATAT
GATCAGTGGCAGTCCTGTCGAGGATCTTGTTCGGCACCCTGGACGTCACC
TCGTACGATGTGGAGGAAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8157:2..4372-

>mRNA_Ecto-sp13_S_contig8157.19501.1 ID=mRNA_Ecto-sp13_S_contig8157.19501.1|Name=mRNA_Ecto-sp13_S_contig8157.19501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8157:2..4372- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGCTGCTCCGCATCGTGCCGGAAACAACGTGTCTGTGTGGGGTT
CGCAAGCGATGGGGTTACTGCGAGAACCCCGGCATGGGTACCCGCAGGGG
TTTTGAGGAGACGGGGAGGCTCGTTTCGTGGTGGCGGCGGGTTGTTTGCG
GAACTACAGTCCGGCGAAGAGGAGGTGCCGCTGGTGCAGGCCATCTGCGA
CGAGCTGGTTGCCGTCACGGACCCGGAGGGGGAGGCGCGGATGGGATCTG
ACAGTCCCGTCATATCGAAGGCAAGGCGTGGTGTACTTAGACTAATGGAC
AAGTTGCAACCACGAGATCTGGGGCTGTCAGAGCGGGATTTCCAGGGGCT
GACGCACTCGCTGTGCATGCCGATTTTCGGCGGGCCGGAGGCGTGCTTCG
AGATGACCGTCTTCGTGCTGCCCAAGGGCGGCGAGATTCCTCTGCACGAT
CACCCCAACATGGCAGTCCTGTCGAGGATCTTGTTCGGCACCCTGGACGT
CACCTCGTACGATGTGGAGGAAGAG
back to top