mRNA_Ecto-sp13_S_contig81568.19500.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81568.19500.1
Unique NamemRNA_Ecto-sp13_S_contig81568.19500.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig81568.19500.1 vs. uniprot
Match: A0A835Z097_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z097_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.100e-14
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MRLVDTVKLDDSGEVESWVFTAKTGHVTSKKRAQGRAKIVERFDSFALANPRNTERFVA 177
            +R+VDTV +   G VE WVFTAK+G  T+KKRA+G  KIV+RF  FALANP N E+ VA
Sbjct:   47 IRIVDTVFIGPDGAVERWVFTAKSGEATAKKRAEGSDKIVDRFTRFALANPHNKEQLVA 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81568.19500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z097_9STRA3.100e-1461.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81568contigEcto-sp13_S_contig81568:270..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size177
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.5830507-CDS-Ecto-sp13_S_contig81568:269..4461681464087.5830507-CDS-Ecto-sp13_S_contig81568:269..446Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81568 270..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81568.19500.1prot_Ecto-sp13_S_contig81568.19500.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81568 270..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81568.19500.1

>prot_Ecto-sp13_S_contig81568.19500.1 ID=prot_Ecto-sp13_S_contig81568.19500.1|Name=mRNA_Ecto-sp13_S_contig81568.19500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MRLVDTVKLDDSGEVESWVFTAKTGHVTSKKRAQGRAKIVERFDSFALAN
PRNTERFVA
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mRNA from alignment at Ecto-sp13_S_contig81568:270..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81568.19500.1 ID=mRNA_Ecto-sp13_S_contig81568.19500.1|Name=mRNA_Ecto-sp13_S_contig81568.19500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81568:270..446+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCTGGTGGACACCGTGAAACTCGACGACTCTGGTGAGGTCGAGAG
CTGGGTCTTCACCGCGAAGACGGGCCATGTCACTAGCAAGAAGAGGGCGC
AAGGTCGGGCCAAGATCGTCGAAAGATTCGACAGTTTTGCGCTGGCGAAT
CCCCGAAATACCGAGAGGTTTGTTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81568:270..446+

>mRNA_Ecto-sp13_S_contig81568.19500.1 ID=mRNA_Ecto-sp13_S_contig81568.19500.1|Name=mRNA_Ecto-sp13_S_contig81568.19500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81568:270..446+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCTGGTGGACACCGTGAAACTCGACGACTCTGGTGAGGTCGAGAG
CTGGGTCTTCACCGCGAAGACGGGCCATGTCACTAGCAAGAAGAGGGCGC
AAGGTCGGGCCAAGATCGTCGAAAGATTCGACAGTTTTGCGCTGGCGAAT
CCCCGAAATACCGAGAGGTTTGTTGCC
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