mRNA_Ecto-sp13_S_contig8148.19492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8148.19492.1
Unique NamemRNA_Ecto-sp13_S_contig8148.19492.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8148.19492.1 vs. uniprot
Match: D8LFY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY6_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 7.850e-130
Identity = 207/219 (94.52%), Postives = 211/219 (96.35%), Query Frame = 1 
Query:   88 MGGGHGMDAEMELSLVAALQASSMPASLLQALRTLDQELGEETEREALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFADLSSSSSPRPQAADETSAALNDGSQATTTTTATPETPAPGEAREDFGERQGQTTAARDDGEEPLQLLLELGAGRLGAGVDGIHKSLSLMAGAL-GPKSLRVRRAFASALRAHLRTVRVDSVFRFDAPKAG 741
            MGGGHGM AEMELSLVAALQASSMPASLLQALRTLDQELGEETEREALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFADLSSS SPRPQAADET+AALNDGSQA T TTATPETPAPGEARED GERQGQTTAARDDGEEPLQLLLELGAGRLGAGVDGIH+SLSLMAGAL G +S+RVRRAFASALRAHL TVRVDSVFRFDAPKAG
Sbjct:    1 MGGGHGMGAEMELSLVAALQASSMPASLLQALRTLDQELGEETEREALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFADLSSSGSPRPQAADETAAALNDGSQAATATTATPETPAPGEAREDLGERQGQTTAARDDGEEPLQLLLELGAGRLGAGVDGIHRSLSLMAGALLGLRSMRVRRAFASALRAHLGTVRVDSVFRFDAPKAG 219
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BLAST of mRNA_Ecto-sp13_S_contig8148.19492.1 vs. uniprot
Match: A0A6H5KTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTN6_9PHAE)

HSP 1 Score: 374 bits (959), Expect = 4.110e-125
Identity = 201/218 (92.20%), Postives = 206/218 (94.50%), Query Frame = 1 
Query:   88 MGGGHGMDAEMELSLVAALQASSMPASLLQALRTLDQELGEETEREALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFADLSSSSSPRPQAADETSAALNDGSQATTTTTATPETPAPGEAREDFGERQGQTTAARDDGEEPLQLLLELGAGRLGAGVDGIHKSLSLMAGALGPKSLRVRRAFASALRAHLRTVRVDSVFRFDAPKAG 741
            MGGGHGM AEMELSLVAALQASSMPASLLQALRTLDQELGEETEREALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFA+LSS S PRPQA DET+  LN+GSQATTTTTATPETPAPGEA ED GERQG TTAARDDGEEPLQLLLELGAGRLGAGVDGI KSLSLMAG LGPKS+RVRRAFASALRAHL TVR+DSVFRFDAPKAG
Sbjct:    1 MGGGHGMGAEMELSLVAALQASSMPASLLQALRTLDQELGEETEREALDGVVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFANLSSCSDPRPQAVDETADELNNGSQATTTTTATPETPAPGEASEDLGERQGHTTAARDDGEEPLQLLLELGAGRLGAGVDGIRKSLSLMAGDLGPKSMRVRRAFASALRAHLGTVRLDSVFRFDAPKAG 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8148.19492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFY6_ECTSI7.850e-13094.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTN6_9PHAE4.110e-12592.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8148contigEcto-sp13_S_contig8148:1836..4606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size742
Hectar predicted targeting categoryother localisation
Exons2
Cds size654
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.9883428-UTR-Ecto-sp13_S_contig8148:1835..19221681464086.9883428-UTR-Ecto-sp13_S_contig8148:1835..1922Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8148 1836..1922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464087.0011065-CDS-Ecto-sp13_S_contig8148:1922..21331681464087.0011065-CDS-Ecto-sp13_S_contig8148:1922..2133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8148 1923..2133 +
1681464087.013817-CDS-Ecto-sp13_S_contig8148:4163..46061681464087.013817-CDS-Ecto-sp13_S_contig8148:4163..4606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8148 4164..4606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8148.19492.1prot_Ecto-sp13_S_contig8148.19492.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8148 1923..4606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8148.19492.1

>prot_Ecto-sp13_S_contig8148.19492.1 ID=prot_Ecto-sp13_S_contig8148.19492.1|Name=mRNA_Ecto-sp13_S_contig8148.19492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
MGGGHGMDAEMELSLVAALQASSMPASLLQALRTLDQELGEETEREALDG
VVDSLVEWFLHESRAPRTADGDDLGLCLRAACWLAPRFADLSSSSSPRPQ
AADETSAALNDGSQATTTTTATPETPAPGEAREDFGERQGQTTAARDDGE
EPLQLLLELGAGRLGAGVDGIHKSLSLMAGALGPKSLRVRRAFASALRAH
LRTVRVDSVFRFDAPKAG
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mRNA from alignment at Ecto-sp13_S_contig8148:1836..4606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8148.19492.1 ID=mRNA_Ecto-sp13_S_contig8148.19492.1|Name=mRNA_Ecto-sp13_S_contig8148.19492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8148:1836..4606+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAACTTACCCTTGTGGCGGGGATCGTGAACCCTTACACACAGAGAAGTA
GTTAATATCACGGTGGAACAGAGGCGGAGTTGGCTTCATGGGAGGCGGGC
ACGGGATGGATGCAGAGATGGAGCTCTCGTTGGTAGCAGCTCTGCAGGCA
TCCTCCATGCCTGCTTCGTTGCTTCAAGCTCTGAGGACTCTTGACCAGGA
GCTAGGGGAGGAAACGGAGCGCGAGGCCCTAGATGGCGTCGTGGACAGCC
TGGTGGAGTGGTTCCTTCATGAGTCAAGGGCTCCTAGAACGGCAGATGGT
AGGTCGTTTGTCCGTTGTATTGCAAGCACCTCTCTCCTCTCTATCTATCC
TCCCTATCGCTAAACTTGGTGGCGGCGTCGGAATTCGATTGTTTTTGGGA
AGCAAACACAGCAGTGGGGATGATTAAGATTTACCTTGCTGGCGGGACTT
CGTAAGGTGGACCTCCATAAGCCAAAAAGGATGGTAAATGTTGTACTGGG
TTGTTGTCGACGTCTGATTTGCTGGGTGTCGTTCATGGATTCCGTTGTTT
AAACTTGGTCTTGCCTTTCGAGAAGACCCTTTTTTTCCACGTCCTCTCCC
GACAAAGACCTCTTCCTACAAGTAAACCTGACTGAAAAATACTTGGGTGA
AAGACAACCGAAGGCTGGTCCCGTTGTGACTCGCTGCTTGCACCTACACA
TAAACAAGACTAACTCCGCTAGTGAAGAGTTCCAGAGGGCGTCGGAAGCA
CGATTGGTGTGCATGCCTGCTGAAATATTTTCGCTCTTCAATCATGTTTG
AAGTGCTTGCTGGTCGAGGAACATTCCGCGAAACCTCAAAGACCAGTCGC
CGTCCTTCGTACATTCGGTGTGGTGTGTTTTTTGGTCGAGTTTTGGCAAA
TTCAACAAGTCAACAACACCCGCCTATTTTTCACACCCATTGTCTGGGCA
CCGTTGTATATAGGTCACGTTTATATTAGGTAACCCGAACGGCGAAATGT
TGGCAAAACGTGTGCCAGATGAATGCGGCCTTCGCTGCTCACTTGAAAAT
AGAGCACATCACTTGAAATATTTATATTTAGATATCGCGGAGGAGTGCGC
TCTCGTCGGGTTGTAGGCGCCAGGTGTACGGCATGACAACTTCAACATCA
GACTCCTGGTAGGGAAGTCGTTCCACCTCGAGGGTTGCGACATGGAACGG
GTAGATCGAGTGTGCGTATCTCACACGATACGTTCCCCTCCTCACTGTCC
TCATCGCGTGCCAGCAGGTGCAGTCTCCGCTGCCGGAAACACTCTCTTCT
CGTATTTACTGCATGCATACAGCAGTACTTCGAAGTAGGTACCAGTCTTT
CTCGTGGTTTTCTCTACCTACCGCTGTATCCGGACATGCGGCCATGCAAA
CCGACGCGTATTACCTTAAGGAAGAGAGAGATGACACCCCCCCCTAGACC
GGCTTTCGAAGCTCAATTGCTCCACAACCAGGCGGGTACGGAAAAAGCAC
CCACGTCTCTCAAAGTCCTTCGACGAGATATTTCTAAAAACGCCACTTTT
GGTGTTCGTATAAGGTTGGTTGCGGAGCAATCGAGCTTTGAAATCGGTCT
ACGGGGGGTGGTGCCATCTCTCCTCCTCTTGCTGCACCTTCTTTCGGACT
GATAACATCGTACCAGTCCTCAAGTGTGCTCCCATGTCGGGAACGCTTGT
TGCGCCCCGTTGTCCCTGGTAGTTTTGTAGCGCCCGCTGTTTTGGTCACG
TACGTGTGTGACAACCAAAGTTTCGTTCCTGCGCCTTGGTGAAGCGGAAG
GAAGAAGAGGCGACGATTTTTTATTCAAACGTTTTTTCATGTGCAAGAAC
AACGGCCATCATTTGCTGCTGCTGCTGCTGCTGTCTACTGGCACACATGG
ATTGCTGTGATAACGAACCGGCAGACCATGTATATGAATCCCGTTGTCTT
GTTTTTGGAGATAACAGTAAGTAGAACTGAAAACAACAACGGCGCGGTCT
ATTGAGCGCCGCCTTATCACTGGTGGAACACTGGCGTACTCGCCCATGTA
TCACTCCCACTAGAAAACTACATGTTGCGCGTTTTTGACTGTTTCTGAGG
ATGGTTTTTGAATCTGTGATTGCGATAAAAGCTAGTCACAAGACAACAAC
GCCTACAGCAGTAGCGTATCTTTTCGAATCAGCAGTGAATATAACAACGG
CGCGCATGTTGTCAACTACAACTGCAACGATGTATTGTGTTATCTGCTTG
AAGCACTGATTGAGATTCCCACAGCAGCAGTCTTGACCTCCCCCGCAATC
TCCTTGTATTCTACTCTCTTCTCCCCAGGCGATGATCTCGGCCTGTGCCT
CAGGGCGGCGTGCTGGCTAGCCCCTCGTTTCGCCGACCTCTCTTCGTCCA
GCAGCCCTAGGCCCCAAGCCGCAGACGAAACCTCCGCTGCACTCAACGAC
GGTAGCCAGGCCACAACCACCACCACGGCAACGCCAGAAACGCCTGCCCC
GGGGGAGGCAAGAGAGGACTTTGGAGAACGTCAGGGTCAGACTACAGCAG
CACGAGACGACGGTGAGGAGCCGTTGCAGCTCCTGCTGGAGCTGGGAGCA
GGCCGGCTGGGCGCCGGAGTAGACGGCATCCACAAGTCCCTGTCTCTGAT
GGCGGGGGCCCTGGGCCCCAAGAGCTTGCGCGTGCGCCGGGCGTTCGCCT
CGGCGCTCCGGGCGCACCTGCGCACCGTGCGCGTGGACTCGGTGTTCCGG
TTCGACGCGCCCAAGGCCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8148:1836..4606+

>mRNA_Ecto-sp13_S_contig8148.19492.1 ID=mRNA_Ecto-sp13_S_contig8148.19492.1|Name=mRNA_Ecto-sp13_S_contig8148.19492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8148:1836..4606+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGCGGGCACGGGATGGATGCAGAGATGGAGCTCTCGTTGGTAGC
AGCTCTGCAGGCATCCTCCATGCCTGCTTCGTTGCTTCAAGCTCTGAGGA
CTCTTGACCAGGAGCTAGGGGAGGAAACGGAGCGCGAGGCCCTAGATGGC
GTCGTGGACAGCCTGGTGGAGTGGTTCCTTCATGAGTCAAGGGCTCCTAG
AACGGCAGATGGCGATGATCTCGGCCTGTGCCTCAGGGCGGCGTGCTGGC
TAGCCCCTCGTTTCGCCGACCTCTCTTCGTCCAGCAGCCCTAGGCCCCAA
GCCGCAGACGAAACCTCCGCTGCACTCAACGACGGTAGCCAGGCCACAAC
CACCACCACGGCAACGCCAGAAACGCCTGCCCCGGGGGAGGCAAGAGAGG
ACTTTGGAGAACGTCAGGGTCAGACTACAGCAGCACGAGACGACGGTGAG
GAGCCGTTGCAGCTCCTGCTGGAGCTGGGAGCAGGCCGGCTGGGCGCCGG
AGTAGACGGCATCCACAAGTCCCTGTCTCTGATGGCGGGGGCCCTGGGCC
CCAAGAGCTTGCGCGTGCGCCGGGCGTTCGCCTCGGCGCTCCGGGCGCAC
CTGCGCACCGTGCGCGTGGACTCGGTGTTCCGGTTCGACGCGCCCAAGGC
CGGC
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