mRNA_Ecto-sp13_S_contig12329.1949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12329.1949.1
Unique NamemRNA_Ecto-sp13_S_contig12329.1949.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12329.1949.1 vs. uniprot
Match: D7FWZ4_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWZ4_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 1.010e-120
Identity = 172/176 (97.73%), Postives = 174/176 (98.86%), Query Frame = 1 
Query:    1 QINMLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALDQGKSYAERAHAAGGLGIGVGHGL 528
            +INMLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALDQGKSYAERAHA GG+G GVGHGL
Sbjct:   38 KINMLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALDQGKSYAERAHAGGGVGNGVGHGL 213
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BLAST of mRNA_Ecto-sp13_S_contig12329.1949.1 vs. uniprot
Match: A0A6H5KRK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRK2_9PHAE)

HSP 1 Score: 352 bits (903), Expect = 5.150e-118
Identity = 174/177 (98.31%), Postives = 176/177 (99.44%), Query Frame = 1 
Query:    1 QINMLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALDQGKSYAERAHAAGGLGIGVGHGLR 531
            +INMLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALDQGKSYAERAHAAGG+G GVGHGLR
Sbjct:   38 KINMLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIRVSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEESFLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALDQGKSYAERAHAAGGVGNGVGHGLR 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12329.1949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWZ4_ECTSI1.010e-12097.73PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KRK2_9PHAE5.150e-11898.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12329contigEcto-sp13_S_contig12329:70..4348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons4
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.3303418-UTR-Ecto-sp13_S_contig12329:69..781681462656.3303418-UTR-Ecto-sp13_S_contig12329:69..78Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12329 70..78 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.341247-CDS-Ecto-sp13_S_contig12329:78..1681681462656.341247-CDS-Ecto-sp13_S_contig12329:78..168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12329 79..168 +
1681462656.3500557-CDS-Ecto-sp13_S_contig12329:652..7931681462656.3500557-CDS-Ecto-sp13_S_contig12329:652..793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12329 653..793 +
1681462656.3584366-CDS-Ecto-sp13_S_contig12329:2896..30621681462656.3584366-CDS-Ecto-sp13_S_contig12329:2896..3062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12329 2897..3062 +
1681462656.3663325-CDS-Ecto-sp13_S_contig12329:4208..43481681462656.3663325-CDS-Ecto-sp13_S_contig12329:4208..4348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12329 4209..4348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12329.1949.1prot_Ecto-sp13_S_contig12329.1949.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12329 79..4348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12329.1949.1

>prot_Ecto-sp13_S_contig12329.1949.1 ID=prot_Ecto-sp13_S_contig12329.1949.1|Name=mRNA_Ecto-sp13_S_contig12329.1949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MLMNTGQGLAIEKNLAKFDVKVLAAETRKQAWIKDLGIGPKTSFVVYIIR
VSRIRDGASCVSAQRYSELRSLYNHLKHEGQVRSEGAPEFPGKRVVTEES
FLGDRSDANSEFVRHRKEQLGSFLRQLFNKNPELWEHPDVVEFFNLEALD
QGKSYAERAHAAGGLGIGVGHGLRCGAV*
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mRNA from alignment at Ecto-sp13_S_contig12329:70..4348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12329.1949.1 ID=mRNA_Ecto-sp13_S_contig12329.1949.1|Name=mRNA_Ecto-sp13_S_contig12329.1949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12329:70..4348+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATAAATATGCTCATGAACACGGGGCAAGGCCTGGCCATCGAGAAGAA
CCTCGCCAAGTTTGACGTTAAAGTCCTGGCCGCTGAGACTCGAAAGCAGG
TAAAGCACTGAGTCTTGACTGCTGCCAAAGTGACCCTCTTTATTGGTTTC
CGTGTTAATTGTAGTTTTGTTTTGAGCCGAGCACAAGCACCAACCCGCCC
CTCGACAACGCCAACCTGGCTCGGGAGTCTGTCAGTACATGAAATCTTCC
ACATCTGTCGCTGATTTCTATTGGCTTGCGGGCCCTGCGGGTCCATGTTA
TTCGAGGAAACCTTTTTCAGGTCAAGTTAGCCTGTGACTGCGGGAATCGA
TCGCGTCAAGTGTACATCAGCACAGACAGAGGGAGAAACTGGATAGAGAC
AGCGGAACGTTTTGTTGCGTCAAGACAACAACAACATCTCTTCGTTCCGA
GACAAGCCGAGCTGCAACGGCACTCTATCGCGTGTACCTCCTGCTTGTAG
GCTAGCAGACACAGCTGGCTACGGATGTTGCTTTTTGCACCTTACTCACT
TGTGCTGTACATGTACGTGGTGAAAATCCCCAGGCCTGGATAAAAGACCT
TGGCATCGGGCCCAAGACGAGCTTCGTCGTTTACATCATCCGGGTGAGCC
GAATAAGGGACGGGGCGTCGTGCGTGTCGGCGCAGCGGTACAGCGAACTG
CGAAGCCTCTACAACCACCTCAAGGTACGTCGCTGTTTGTTGCTGTTGTT
GCTATTGTTGTTGCTGTTGCTGCTGCTGCTGCTGTTTTTGTTGCTCCTGC
TGCTGCTGTCGTTGATGCTGTTGCCGTCTGTTGCTGATGTTGTTGCTGTT
GTCTTAGCGTTAAACCCATCATGCCCATACGTGTCACGTCCTCTCCTTCC
TGCCGTACAAATGCGTAGATAGCATTGGTAAGAGCATAGACGATGCCACA
CATCCTGGGCCGAACTTCAAAGCTCGATTACCCCAGGACGAAGAGGATGT
TGGTACAATATCGAACGCAGGTTGGAAAGTTCTCGATGACACAGTTCCAA
CGCCTCCCCATTTTCGGCACCGTTGCCTGCTGGTTTTGCTGCAAAGTAGT
CGAGCTTTGAAGCCCTTTCCGGGGGGTATAGTGTACTACTTTGCGACCTG
ATAAAGTCGACAACGCCAACAAACGAGCTTTTCGTGCAGCAACGGGCTGA
CCCGAATCCATGGCCACATGTGTACTTACTAGCATATGAGGTTCAACGAC
CAACGATCGTTTCACCGCAGGATAAAAAAAGTCGAAGAGATTTTTTAGGA
AAAATGAAAATCCCCGCGCGCGGAAGGTATTTATGTATCGCATGCGTACT
TGTATGTCAAGCAGAAAATGGAAAATAATGAGAAGGCGAGCGCGTGCACC
GTTGTCTCCTTCGGAAGTGCGCATGCATACCATGGCCTCTCTCTCTCCGC
CACCGTTTTCGGTGCACGTATGCATATTAGCCCCGCATGCAGTACATGCA
TACCGCGGCCATGCGTCGACCGATTTCAGCACACCACGAGAAAGTTGGAC
CGCTTTCGCGAGATCAGCAAGTTTAGGAGGAAATGGAACAGGGAGGGGGG
ACGCAGGCCCTTTTCTCTAACCCTAACCCTTGCCCAACTTCTTCGACTGT
ATGCTTTGTCCAACATGTTTACTTAATCGAAGCACCTCACGTTATGTAGG
TGGCATGATATGACTCGAGATACCACACCCCCGCGACCGATGATCAAAGT
TTGATTAGTCCACAACAGTTGAAGGAGCAGCGGTGCCGAGAATGGCGGCG
TTGGAACTGCTGTGCGTTCGGTCATTATTGTTTTATGCATGGTTGTTTTC
TGCGATTATTGCCTCCTCCCACGATTGTTCACTGCCATGATTTTTTGCTC
GCTCCTGTGATTGGTTGCTGCCACGGCGGTTTGCTTCCCACCATTGTTTC
CTGCCGGTGCTCTTCCGGCCTGTTGTGTTGCAGGGGTATGTACGTCTGTA
TCGGAGTAGAGTCGACGCAACCAGCACGCAAACAACAAAGAAGGCACTCA
TCGGAATTCGTTTATTTTGTTTTTTTTGCCCACGCCAAGCCCTCCCCTAA
GACGGTGTTGTACCGACACGGCAGGGTGGGGCGGTAAATTCCCTGCGGAA
GGGGTGCACGGTAGGGCACAACTTTACTCTTTTTTTGTTATATTGGGGGG
GAAGAAAACACGTTCAAGTTCGGCTCTGCTGTGTAGATGCCGAACGTTTG
GGCAGTAGCAGCGCGCTGAGCGCTGGGAATGCAACAACCGACGTACTCGA
CGATACGACAGCAGTAGTAGTACTCCCGAGGCGTGCTCCGCGGAGCAAGG
GAGTATTCAGTGCGTCGGGAAAGATCGCGTGTTTGTCCGTATGTACGTTT
TCAAGAACACTTGAGATTTGACCAAGTCTTCGTCTAATCGTGGTTCTTTG
TGTTCGAAGCGTTTTTGACAGCATTTTTCCGCTCCACCCCGGTGTTTTGC
GACCCTTGTTCTCTATGGTTGTTCACCACCACCAACCAACAACACCGCCG
CCGCCGACGACAATGACGTCACCAACGACGAAACATGAACACCATCAACA
ACTCTCGTGGTTGCTCACCACCAACCAACATCGACGACGCGAAACGTCGT
CATCATCAACAACAACAACAACAACAATGATAATACTAACGACGACGACG
GCGACGACGACGACGGCGGCGACAACTTCAACACCAACAACTCTCGTGGT
TGCTCACCACCAATCAACAACAACATCATCATCGACAACAATGACAACAA
CGACGACGGCGACGAAAACAACAACAGCACGAGGGGCAGGTGCGATCCGA
GGGCGCTCCCGAGTTTCCGGGGAAGCGGGTGGTGACGGAGGAGAGCTTTC
TCGGCGACAGGTCCGACGCTAATAGCGAGTTCGTGAGGCACCGGAAGGAG
CAGCTGGGTAGCTTCTTGCGCCAGTTGTTCAACAAGAACCCTGGTGAGTT
ATGAGAGAGACGGACAGCGTGAGAAAGAGAGACAGGGACATTGAGTGAGA
AGGTGTGTGTGGGAGAGAGAGAATGAGGCAAGGGCGGGAACAGGCAGACA
GACGACAGACAGAGACATGCATATTCGAGAAGGCAGATAGAGACTAACAT
AATGAGGCAGGGACAGAGACAGGTATGTATGAGAAGGCAGATAGAGACAG
ACAGACAACAGACAGAGAGGGCATACAAGAAGGCAGCTTGATACAGACAG
ACAACAGACAGACAGGCAACAGACAAGAGACAGGCATATACAAGAAGGTA
GATAGAGTCAGGCAGAGAAGAGCAAGACAGGCAACAGACAAAGACAGGCA
TATACGACAAGGGAGATTGAGACAGACAGAGAGGTGCAGAGAAAGTAGTT
CCGTTTTGCCTTGGTCGGGATTTGCGTCTCCTGCACCTCACAGCTTGCTG
CATGGCACAGGGCGCTCGCCCTGCATGGATTCGATTCATCGCTCTTGGTC
TTGTTGCCTGTGGCTCTTTCTTATTCTATCGAAGCTCTTTTTGTTATCTT
TTTCCTGGCTATTGTTTCGCGAACACACGTTCAACTTATTGTTGAGCCGT
ATTCCGAAAGGCGATGTGTAAGAAAATGGCACCTGCGATCACCGAAACTT
TCCAATGTGGTGTCTTGGTATCGGATACAGCATGGGTCACTGTGTACTAT
TAATAATGCCGGTATGTGCCCAGATAAGTCACCGGCAAGTTCATTTGGCA
CTTAACCGGACCGGCAGTGTTCCAAGTACTGACAATTACTTGGAAATTCA
GTGTGTACCCGCCGAAAACACCGGCACTATCCAGGGCATTGGCACTGTTC
AACTGGCTCAAAACAGGGCTCCCACTGCCTGTATTGCGGACGAGAAGGAC
GAACAGGGAGGTCAGGAAGTGTATCGCATGCGAAGCCAAGGGGCAGCACG
ACCGACAGACAATAAATCAATTCAGCAAATATACCTAGAAGCCTAAGAAC
GTTTTTCTCTTGCTGAATTCCGGAAATTACGGAGTGCTTGTACTTGCTTT
GGCCTCTAATGCAAGAATTTGCTACCTCTTCCGCCCGTCGTCGTTGTCGT
GTCTCCCTCTTTTTCCGGATGGGGCGCTGGTGGGAACAGAGCTGTGGGAG
CACCCCGACGTGGTTGAGTTCTTCAACCTGGAAGCCTTGGACCAAGGGAA
GAGCTACGCGGAAAGGGCGCACGCGGCCGGAGGGCTTGGGATTGGCGTCG
GGCACGGCTTGAGGTGCGGTGCGGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12329:70..4348+

>mRNA_Ecto-sp13_S_contig12329.1949.1 ID=mRNA_Ecto-sp13_S_contig12329.1949.1|Name=mRNA_Ecto-sp13_S_contig12329.1949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12329:70..4348+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCATGAACACGGGGCAAGGCCTGGCCATCGAGAAGAACCTCGCCAA
GTTTGACGTTAAAGTCCTGGCCGCTGAGACTCGAAAGCAGGCCTGGATAA
AAGACCTTGGCATCGGGCCCAAGACGAGCTTCGTCGTTTACATCATCCGG
GTGAGCCGAATAAGGGACGGGGCGTCGTGCGTGTCGGCGCAGCGGTACAG
CGAACTGCGAAGCCTCTACAACCACCTCAAGCACGAGGGGCAGGTGCGAT
CCGAGGGCGCTCCCGAGTTTCCGGGGAAGCGGGTGGTGACGGAGGAGAGC
TTTCTCGGCGACAGGTCCGACGCTAATAGCGAGTTCGTGAGGCACCGGAA
GGAGCAGCTGGGTAGCTTCTTGCGCCAGTTGTTCAACAAGAACCCTGAGC
TGTGGGAGCACCCCGACGTGGTTGAGTTCTTCAACCTGGAAGCCTTGGAC
CAAGGGAAGAGCTACGCGGAAAGGGCGCACGCGGCCGGAGGGCTTGGGAT
TGGCGTCGGGCACGGCTTGAGGTGCGGTGCGGTGTAG
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