mRNA_Ecto-sp13_S_contig8136.19479.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8136.19479.1
Unique NamemRNA_Ecto-sp13_S_contig8136.19479.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: A0A6H5LH97_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH97_9PHAE)

HSP 1 Score: 856 bits (2212), Expect = 8.730e-308
Identity = 496/602 (82.39%), Postives = 509/602 (84.55%), Query Frame = 1
Query:    1 REFPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVER--RALPWQSGETSAGEGERVVFLTTPCTTLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVH-----NTIYIDPSKSHLFVGGVCDIVAPPPATRSQGILNSSSSGXXXXXXXPRSWGNKAWGLVSGGGMSCGVDSAAADDHNHQRHVGKEXXXXXXXXXXXXXXXXXXXXXXXXDGSARDVRGFGTVVMEMILMGRLDPALTEDERFLEMLSVFSGWPESVVDLLRSCRAPINERPSAEQLLRHPFLELGNDLDDEAVYGDPTLVAAAFAAVHGHGGFAHQLPPGASLPVPLCPARFGGXXXXXXXXCSNTPTSSTDFAAWSSSCGSGXXXGHGHHTPSCVSTESPSPSSPSAAPSFGGVPTVPSPPTMAAAAAAMSAGVGPFASQGGLXXXTDXXXGG----GFGLDWGEGFPSLLPAGVTPAAYANAKAIAARMQHAAHPYSNPAGAAPFHHPTNVYDDDCQGEERVGRNRSASAGGYMRSGGSRSEDTGIGGYGFGVSQHEEGGGGSA--GGRPRSASEDAVWDMLPSDESQCRRPFSVSAVEGRHGY 1767
            RE PPKERSAMKR++DLLQ LKHDHVLGVRRYWDAS AGPVER  R LPWQSGETSA EGERVVFLTTPCTTLEAFVDTKVEFLRWRVVKRWS+QIL+ALLFLHD SPPVVH     +TIYIDPSKSHLFVGGVC+IVAPPPATRS+G+L SS SG       P SWGNKAWGLVSGGGM+CG+DSA  DD          XXXXXXXXXXXXXXXXXXXXXXXXDG ARDVRGFGTVV+EMIL  RLDPAL EDERFLEMLSVFSGWPE+VVDLLRSCRAPINERPSAEQLLRHPFLELGNDLDDEAVYGDPTLVAAAFAAVHGHGGFAHQLPPGASLPVPLCPAR GG         SNTPTSSTDFAAWSSSCG  XXX    HTPSCVSTESPSPSSPSAAPSFGGVPTVPSPPTM           GPFASQGGL   T    GG    G+GLDWGE F S LPAGVTPAAYANAKAIAARMQHAAHPYSNPAGAAPFHHPTNVYDDD QG ER GRNRSASAG  MRSGGSRSEDTGIGGYGFGVSQ EEG       GGRPRSASEDAVWDMLPSDESQCRRPFSVSAVEGRHGY
Sbjct:   41 RELPPKERSAMKRSVDLLQELKHDHVLGVRRYWDASPAGPVERQSRTLPWQSGETSAEEGERVVFLTTPCTTLEAFVDTKVEFLRWRVVKRWSQQILKALLFLHDHSPPVVHKNLSLSTIYIDPSKSHLFVGGVCNIVAPPPATRSKGMLCSSGSGGGVVGGGPMSWGNKAWGLVSGGGMNCGLDSA--DDXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXDGRARDVRGFGTVVIEMILKRRLDPALAEDERFLEMLSVFSGWPEAVVDLLRSCRAPINERPSAEQLLRHPFLELGNDLDDEAVYGDPTLVAAAFAAVHGHGGFAHQLPPGASLPVPLCPARCGGGSGTTW---SNTPTSSTDFAAWSSSCGGXXXXXXXXHTPSCVSTESPSPSSPSAAPSFGGVPTVPSPPTMXXXXXXXXXAAGPFASQGGLGSYT--AGGGXXXRGYGLDWGEDFSSHLPAGVTPAAYANAKAIAARMQHAAHPYSNPAGAAPFHHPTNVYDDDGQGGERGGRNRSASAGRDMRSGGSRSEDTGIGGYGFGVSQREEGXXXXXXXGGRPRSASEDAVWDMLPSDESQCRRPFSVSAVEGRHGY 633          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: D7FPS4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS4_ECTSI)

HSP 1 Score: 817 bits (2110), Expect = 1.590e-291
Identity = 490/603 (81.26%), Postives = 498/603 (82.59%), Query Frame = 1
Query:    1 REFPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVER--RALPWQSGETSAGEGERVVFLTTPCTTLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHNTIYIDPSKSHLFVGGVCDIVAPPPATRSQGILNSSSSGXXXXXXXPRSWGNKAWGLVSGGGMSCGVDSAAADDHNHQRHVGKEXXXXXXXXXXXXXXXXXXXXXXXXDGSARDVRGFGTVVMEMILMGRLDPALTEDERFLEMLSVFSGWPESVVDLLRSCRAPINE----------RPSAEQLLRHPFLELGNDLDDEAVYGDPTLVAAAFAAVHGHGGFAHQLPPGASLPVPLCPARFGGXXXXXXXXCSNTPTSSTDFAAWSSSCGSGXXXGHGHHTPSCVSTESPSPSSPSAAPSFGGVPTVPSPPTMAAAAAAMSAGVGPFASQGGLXXXTDXXXGGGFGLDWGEGFPSLLPAGVTPAAYANAKAIAARMQHAAHPYSNPAGAAPFHHPTNVYDDDCQGEERVGRNRSASAGGYMRSGGSRSEDTGIGGYGFGVSQHEEGGGGSAG--GRPRSASEDAVWDMLPSDESQCRRPFSVSAVEGRHGY 1767
            RE PP ERS+MKRTIDLLQGLKHDHVLGVRRYW+AS AGP ER  RALPWQSGETSAGEGERVVFLTTPCTTLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHNTIYIDPSK+HLFVGGVCDI AP                XXXXXXXP +WGNKAWGLVSGGGM+CG+ SAA             XXXXXXXXXXXXXXXXXXXXXXXXDG ARDVRGFGTVV+EMIL GRLDPAL EDERFLEMLSVFSGWPESVVDLLRSCRAPINE          RPSAEQLLRHPFLELGNDLDDEAVYGDPTLVAAAFAAVHGHGGFAHQL PGASLPVPLCPAR GG        CSNTPTSSTDFAAWSS CG GXX GHGHHTPSCVSTESPSPSSPSAAPSFGGVPTVPS          MSA VGPFASQGGL   T+   GGG G    E F SLLPAGVTP AYANAKAIAARMQHAAHPYSN AGAAPFHHPTNVYDDD QGEERVGRNRSASAG  MRSGGSRSEDTGIGGYGFGVSQ            GRPRSASEDAVWDMLPSDESQCRRPFSVSAVEGRHGY
Sbjct:   92 RELPPDERSSMKRTIDLLQGLKHDHVLGVRRYWEASRAGPAERQSRALPWQSGETSAGEGERVVFLTTPCTTLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHNTIYIDPSKNHLFVGGVCDIAAPXXXXXXXXXXXXXXX-XXXXXXXPMNWGNKAWGLVSGGGMNCGLHSAAXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXDGRARDVRGFGTVVIEMILKGRLDPALAEDERFLEMLSVFSGWPESVVDLLRSCRAPINEPSLIKRYNFQRPSAEQLLRHPFLELGNDLDDEAVYGDPTLVAAAFAAVHGHGGFAHQLLPGASLPVPLCPARCGGGGGTT---CSNTPTSSTDFAAWSS-CG-GXXAGHGHHTPSCVSTESPSPSSPSAAPSFGGVPTVPSS-XXXXXXXXMSAAVGPFASQGGLGPYTNGGGGGGSGY---EDFSSLLPAGVTPTAYANAKAIAARMQHAAHPYSNGAGAAPFHHPTNVYDDDGQGEERVGRNRSASAGEGMRSGGSRSEDTGIGGYGFGVSQRXXXXXXXXXXXGRPRSASEDAVWDMLPSDESQCRRPFSVSAVEGRHGY 681          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: A0A7S3JUI1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUI1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.080e-9
Identity = 46/155 (29.68%), Postives = 81/155 (52.26%), Query Frame = 1
Query:    1 REFPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGERVVFLTTPCTT--LEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVH-----NTIYIDPSKSHLFVGGV---CDIVAPPPATRSQGILNS 435
            +  P  E++ +   + LL  L+H++++     W       V R     + GE        VVF+T   ++  L+ F++ KV+ +RW++VKRW +QIL+AL +LH Q PP++H     + I+I+ S   L +G +     +   PP T+ Q +L +
Sbjct:   81 KNLPAAEKARVINEVRLLDRLEHENIIDFHGSW-------VNR-----EKGE--------VVFVTEILSSGSLKRFIN-KVKLIRWKIVKRWCKQILKALAYLHSQDPPIIHRDIKCDNIFINGSTGDLRIGDLGLSTTVTLRPPGTKGQSVLGT 214          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: A0A421FJA9_9STRA (Protein kinase domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A421FJA9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.110e-9
Identity = 39/126 (30.95%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    7 FPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGERVVFLTTPCT--TLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHNTIYIDPSKSHLFVGG 378
             P  E++ + + + LLQ L+H +++     W +                     E  +VVF+T   T  TL++++  +V+F++W+++KRW  QILE L +LH+QSPPV+H  +  D    ++FV G
Sbjct:   62 LPTTEKTRIIQEVQLLQKLEHKNIINFYGSWFSK--------------------EKNQVVFITEIMTSGTLKSYIK-RVQFIKWKIIKRWCIQILEGLHYLHNQSPPVIHRDLKCD----NIFVNG 162          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: F0Y9K5_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9K5_AURAN)

HSP 1 Score: 66.2 bits (160), Expect = 1.730e-8
Identity = 41/130 (31.54%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    7 FPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGERVVFLTTPCTT--LEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHN-----TIYIDPSKSHLFVG 375
             PP E++ +   + LL  L+H++++     W       V R     + GE        V F+T   ++  L+ F++ KV+ +RW+++KRW RQIL+AL +LH Q+PP++H       I+I+ S   L +G
Sbjct:   21 MPPNEKARVINEVRLLDRLEHENIIDFHGSW-------VNR-----ERGE--------VCFITEILSSGSLKKFIN-KVQVVRWKIIKRWVRQILKALAYLHSQTPPIIHRDIKCENIFINGSTGDLRIG 129          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: A0A3F2RMH2_9STRA (Protein kinase domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RMH2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.760e-8
Identity = 39/126 (30.95%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    7 FPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGERVVFLTTPCT--TLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHNTIYIDPSKSHLFVGG 378
             P  E++ + + + LLQ L+H +++     W +                     E  +VVF+T   T  TL++++  +V+F++W+++KRW  QILE L +LH+QSPPV+H  +  D    ++FV G
Sbjct:   62 LPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSK--------------------EKNQVVFITEIMTSGTLKSYIK-RVQFIKWKIIKRWCIQILEGLHYLHNQSPPVIHRDLKCD----NIFVNG 162          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: A0A225X176_9STRA (Serine/threonine protein kinase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X176_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.530e-8
Identity = 38/126 (30.16%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    7 FPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGERVVFLTTPCT--TLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHNTIYIDPSKSHLFVGG 378
             P  E++ + + + LLQ L+H +++     W +                     E  +VVF+T   T  TL++++  +V+F++W+++KRW  QILE L +LH Q+PPV+H  +  D    ++FV G
Sbjct:   61 LPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSK--------------------EKNQVVFITEIMTSGTLKSYIK-RVQFIKWKIIKRWCLQILEGLHYLHSQNPPVIHRDLKCD----NIFVNG 161          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: A0A3M6VCW2_9STRA (Protein kinase domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCW2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.680e-8
Identity = 38/126 (30.16%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    7 FPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGERVVFLTTPCT--TLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHNTIYIDPSKSHLFVGG 378
             P  E++ + + + LLQ L+H +++     W +                     E  +VVF+T   T  TL++++  +V+F++W+++KRW  QILE L +LH+Q+PPV+H  +  D    ++FV G
Sbjct:   61 LPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSK--------------------EKNQVVFITEIMTSGTLKSYIK-RVQFIKWKIIKRWCIQILEGLHYLHNQNPPVIHRDLKCD----NIFVNG 161          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: A0A8K1CFS8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFS8_PYTOL)

HSP 1 Score: 67.8 bits (164), Expect = 4.740e-8
Identity = 42/152 (27.63%), Postives = 81/152 (53.29%), Query Frame = 1
Query:    7 FPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGERVVFLTTPCTT--LEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVH-----NTIYIDPSKSHLFVG--GVCDIVAPPPATRSQGILNS 435
             P  E++ + + + LLQ L+H +++     W +                     E  +VVF+T   T+  L++++  +V+F++W+++KRW  QILE L +LH Q+PPV+H     + I+I+ +   L +G  G+   +A   ++R+Q +L +
Sbjct:   61 LPSSEKTRIIQEVQLLQKLEHKNIINFYGSWFSK--------------------EKNQVVFITEIMTSGNLKSYIK-RVQFVKWKIIKRWCLQILEGLHYLHSQNPPVIHRDLKCDNIFINGNTGDLRIGDLGLSTQLAVHKSSRAQSVLGT 191          
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Match: A0A0W8DIG9_PHYNI (Protein kinase domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DIG9_PHYNI)

HSP 1 Score: 67.4 bits (163), Expect = 4.800e-8
Identity = 38/126 (30.16%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    7 FPPKERSAMKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGERVVFLTTPCT--TLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVHNTIYIDPSKSHLFVGG 378
             P  E++ + + + LLQ L+H +++     W +                     E  +VVF+T   T  TL++++  +V+F++W+++KRW  QILE L +LH Q+PPV+H  +  D    ++FV G
Sbjct:   61 LPSTEKTRIIQEVQLLQKLEHKNIINFYGSWFSK--------------------EKNQVVFITEIMTSGTLKSYIK-RVQFIKWKIIKRWCIQILEGLHYLHSQNPPVIHRDLKCD----NIFVNG 161          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8136.19479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LH97_9PHAE8.730e-30882.39Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FPS4_ECTSI1.590e-29181.26Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S3JUI1_9STRA4.080e-929.68Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A421FJA9_9STRA7.110e-930.95Protein kinase domain-containing protein n=3 Tax=P... [more]
F0Y9K5_AURAN1.730e-831.54Protein kinase domain-containing protein (Fragment... [more]
A0A3F2RMH2_9STRA1.760e-830.95Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A225X176_9STRA4.530e-830.16Serine/threonine protein kinase n=1 Tax=Phytophtho... [more]
A0A3M6VCW2_9STRA4.680e-830.16Protein kinase domain-containing protein n=2 Tax=P... [more]
A0A8K1CFS8_PYTOL4.740e-827.63Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0W8DIG9_PHYNI4.800e-830.16Protein kinase domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8136contigEcto-sp13_S_contig8136:2264..5843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score812.8
Seed ortholog evalue1.1e-232
Seed eggNOG ortholog2880.D7FPS4
Model size1770
KEGG koko:K08867,ko:K12189
KEGG Pathwayko04144,map04144
KEGG ModuleM00410
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0584@1,KOG0584@2759
EC2.7.11.1
Cds size1740
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01009,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8136.19479.1prot_Ecto-sp13_S_contig8136.19479.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8136 2264..5813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464085.9724689-CDS-Ecto-sp13_S_contig8136:2263..31991681464085.9724689-CDS-Ecto-sp13_S_contig8136:2263..3199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8136 2264..3199 -
1681464085.9866798-CDS-Ecto-sp13_S_contig8136:3658..37791681464085.9866798-CDS-Ecto-sp13_S_contig8136:3658..3779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8136 3659..3779 -
1681464085.996893-CDS-Ecto-sp13_S_contig8136:4049..44301681464085.996893-CDS-Ecto-sp13_S_contig8136:4049..4430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8136 4050..4430 -
1681464086.0164642-CDS-Ecto-sp13_S_contig8136:4750..48481681464086.0164642-CDS-Ecto-sp13_S_contig8136:4750..4848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8136 4751..4848 -
1681464086.032043-CDS-Ecto-sp13_S_contig8136:5285..54201681464086.032043-CDS-Ecto-sp13_S_contig8136:5285..5420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8136 5286..5420 -
1681464086.0466127-CDS-Ecto-sp13_S_contig8136:5744..58131681464086.0466127-CDS-Ecto-sp13_S_contig8136:5744..5813Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8136 5745..5813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464086.0656576-UTR-Ecto-sp13_S_contig8136:5813..58431681464086.0656576-UTR-Ecto-sp13_S_contig8136:5813..5843Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8136 5814..5843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8136.19479.1

>prot_Ecto-sp13_S_contig8136.19479.1 ID=prot_Ecto-sp13_S_contig8136.19479.1|Name=mRNA_Ecto-sp13_S_contig8136.19479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=580bp
MKRTIDLLQGLKHDHVLGVRRYWDASHAGPVERRALPWQSGETSAGEGER
VVFLTTPCTTLEAFVDTKVEFLRWRVVKRWSRQILEALLFLHDQSPPVVH
NTIYIDPSKSHLFVGGVCDIVAPPPATRSQGILNSSSSGSGSGGGGPRSW
GNKAWGLVSGGGMSCGVDSAAADDHNHQRHVGKEDDDPPAAPEEEEEEEE
EEEEEEEEDGSARDVRGFGTVVMEMILMGRLDPALTEDERFLEMLSVFSG
WPESVVDLLRSCRAPINERPSAEQLLRHPFLELGNDLDDEAVYGDPTLVA
AAFAAVHGHGGFAHQLPPGASLPVPLCPARFGGGGGGGGTTCSNTPTSST
DFAAWSSSCGSGGGAGHGHHTPSCVSTESPSPSSPSAAPSFGGVPTVPSP
PTMAAAAAAMSAGVGPFASQGGLGPYTDGGGGGGFGLDWGEGFPSLLPAG
VTPAAYANAKAIAARMQHAAHPYSNPAGAAPFHHPTNVYDDDCQGEERVG
RNRSASAGGYMRSGGSRSEDTGIGGYGFGVSQHEEGGGGSAGGRPRSASE
DAVWDMLPSDESQCRRPFSVSAVEGRHGY*
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mRNA from alignment at Ecto-sp13_S_contig8136:2264..5843-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8136.19479.1 ID=mRNA_Ecto-sp13_S_contig8136.19479.1|Name=mRNA_Ecto-sp13_S_contig8136.19479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3580bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8136:2264..5843- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGAGTTTCCGCCCAAGGAGAGGAGTGCAATGAAGAGAACCATCGACCT TCTACAGGGATTGAAGCACGACCACGTCCTGGGGGTGCGGCGCTACTGGG TGAGACGAACTGGGGGGGCACAACGCTGGTAGCGGTCGAGGAGGGGGGTG GGTGGGAGTAGGGGGAGACGGACAGGCAGAGAGACGTCGAAGGTTGTAAA AAGAAAAGCGGTACAAATGTTGTTCGACAGCGACCTAGAAATTGTCCACC CAAGCACAAACGTCGCACCTTCCAGTCCAGTCCCAGGCAACACCAACCTA CGTTAATACTGTAGCACTTTCCCCAGAAGGCAGTATACAGCCCTCATCCC GGCAACGCTAATAGTTGTACCTGACCCTTCCCATGTTGTCGATGTCGCCC TCGGTCGCGCCCCCCGGTGGCAGGACGCGTCGCACGCCGGCCCGGTCGAG CGGCGCGCGCTGCCTTGGCAGTCGGGGGAGACCTCGGCCGGGGAGGGGGA GCGCGTGGTCTTCCTGACCACGCCGTGTACGACGCTGGAGGCCTTCGTGG ACACCAAGGTGAGGTTCGGTTGGGGGATAAGAGTTGTCGATCGACGGTCA TCTGAGACGGCCAGGTAGATGTCGTTGCGTTGAAGGTCCCCGTATTTATG GCCAGGTTCTGGCGCTAAGCTCTCGCCGCGTGATGAGCGGAGGTGCGTGT ATGGGGTGCGGAGTTCACGGGACCCCTCTATCGCGCTAAGCCCCCCCCCC CCCCCCCGCCCCCCCCCCGCTGCTGGCTCGTGGCCCCCCCTACCCCCCCT CCTCCTCCGCTGGAGCTTCTCCCTGTAGCGCGATGNNNNNNNNNNGGCGT CCAGTCCCCGCGGGGGGGGGGGGGGGGGGGGGTTTGGGGGGGGGGGTTTC CCCGGCCCCCTTTTCTCCTCCTAGCCCCCCCCCCCCCCCCCCGGGACCCG GTCTGGTAATCGTTCGCTTCCCCCCTTACCGTCCGTCCTCTCCAGGTAGA GTTCCTTCGATGGCGCGTGGTGAAGCGATGGAGCAGGCAGATTTTGGAGG CGTTGTTGTTCCTTCACGATCAGTCCCCGCCCGTGGTACACAAGTGAGTT TTTGTTTTTGTTGTCTCTTGTTGCGCCGCTTCATAGGCATGCGCTCACGT GCTGCTCCCCCCTTGCCTCTCTTCCTCCGCGGCAGTGTATTGCCTTGAGC TTTCGAGCACAAGGATGTATGCAGCCCGGGGGCCGTGGTGGGGGGGGGGT TCCAAACGTTTTTGTCCTCAGCCTGTCCATCTTTTGTTGATGGCAAAGAA AATCTACCGACACACACTCTCGTAGTAGCAGTCGTGTGCACAGGCAGCAA GCTATGCAGCAACCATCGTAACGCCCCCCACCCCTTGCCGTGTTGCAGGA ACTTGTCCCTCAGCACGATCTACATCGACCCTTCCAAGAGCCACCTGTTC GTGGGCGGTGTCTGCGATATCGTCGCTCCCCCTCCCGCAACGCGATCCCA AGGGATTCTGAACAGCAGCAGCAGCGGTAGCGGTAGCGGTGGTGGCGGCC CGAGGAGCTGGGGAAACAAGGCGTGGGGTTTGGTGTCCGGGGGCGGCATG AGCTGCGGCGTCGACAGCGCTGCCGCCGACGACCACAACCACCAGCGCCA CGTCGGCAAGGAGGATGACGACCCGCCCGCCGCACCGGAGGAGGAGGAAG AGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGATGGCAGCGCGAGA GACGTTCGAGGTTTCGGCACGGTGGTGATGGAAATGATCCTCATGTGAGC TTTGCATCGGCCTAGGCATAACATGTAGTCTAGCGTCAGATATGAACCAC TACCAATACGAGATGCGCTTGTCGCCATGCCTTTCTTGCGCCCGATCCCT CCCGTGTCGCCACCGTCACATCCGCGAACAAAAGCCGCCCTCCCTCCTCG CCCCCGCCCCCCGTAGCAGCGCCGCCAATAGGAGAAAGTGCCGAAAAGCG TTCTTGCATGCTCGAACCGTTGTCTGACGTATCCGACAACGTCCGGGGCG TTGTGTCCTTACAGGGGGAGGTTGGACCCGGCCCTGACGGAGGACGAGCG GTTCCTGGAGATGCTCTCGGTCTTCTCGGGCTGGCCTGAGTCGGTAGTGG ACTTGCTCCGGTCGTGTCGCGCGCCTATCAACGAGGTGTGTGGAAGGGCC AGCGGTCGATCATCAATATTCCGTCTGTCACAGTTTTTCCGATCCTTGGG GGAGCGCCGGGTTCGTAGTTTTTTGGCTTGTAGTATGCCAAGCTGAGCTC TTTTTTTTTCTAGAGACCCCGCTGCTGTGCATGTCTCCTGGAGCGAAGAA AAAAACACATCTCGAGAGACAGGCCAGGTGCACAGGGCTCGAGGCGCCAC GATCGTGCGCTGGCATGCCGGGGAACGGCTCCGTGAAATATTTCGCCGAA AATCCCCACGCCGGAGGATGCCCCTTCTTTTGACCGAGCCGAGTCTCATC AAACGCAACAACTTGCAGGTATGGCGCGTACCCCCGCTGCTCCCATACAA TCTTGCACCTGGCACACGACGATTGATCCCATTTGTTTGTTCTCTCTCTT GCTGTTTTGTTTTATTTTCGACGATGTTGTTTCCGACAACTCAGAGGCCA TCGGCGGAGCAACTCCTGCGGCACCCGTTTTTGGAGCTGGGGAATGACCT CGACGACGAGGCCGTCTACGGGGACCCCACTCTCGTCGCTGCCGCCTTCG CCGCCGTTCACGGCCACGGAGGCTTCGCGCACCAGCTCCCCCCCGGCGCT TCCCTTCCCGTCCCCCTCTGCCCCGCTCGCTTTGGCGGCGGCGGCGGCGG CGGCGGCACGACGTGCAGCAACACGCCGACCAGCAGCACCGACTTCGCGG CGTGGTCGTCGTCGTGCGGGAGCGGAGGCGGGGCGGGGCATGGGCACCAC ACCCCGTCGTGCGTGTCTACGGAGTCCCCCTCGCCGTCGTCGCCGTCCGC GGCGCCTTCTTTCGGCGGGGTGCCGACCGTGCCGTCCCCGCCCACCATGG CGGCGGCGGCGGCGGCGATGTCGGCGGGGGTGGGCCCGTTCGCGTCCCAG GGCGGGCTTGGACCCTACACCGACGGCGGCGGTGGCGGCGGTTTTGGCCT TGACTGGGGCGAGGGCTTCCCGTCGCTCCTGCCGGCCGGGGTGACTCCGG CCGCGTACGCGAATGCGAAGGCGATCGCCGCAAGGATGCAGCACGCGGCC CACCCTTACTCGAACCCTGCCGGCGCCGCTCCATTCCATCACCCCACAAA CGTGTATGACGACGACTGCCAGGGCGAAGAACGAGTCGGTCGGAACCGAT CGGCCTCGGCCGGGGGGTACATGCGCAGCGGCGGCAGCCGGAGCGAGGAC ACCGGGATCGGCGGGTATGGCTTCGGGGTTTCTCAGCACGAGGAGGGGGG CGGAGGGTCGGCGGGGGGCCGGCCGCGCTCTGCGTCGGAGGACGCGGTGT GGGACATGCTGCCCTCCGATGAGTCCCAGTGCCGCCGGCCGTTTTCCGTG AGCGCCGTGGAAGGGCGGCACGGTTACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8136:2264..5843-

>mRNA_Ecto-sp13_S_contig8136.19479.1 ID=mRNA_Ecto-sp13_S_contig8136.19479.1|Name=mRNA_Ecto-sp13_S_contig8136.19479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8136:2264..5843- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAGAACCATCGACCTTCTACAGGGATTGAAGCACGACCACGTCCT
GGGGGTGCGGCGCTACTGGGACGCGTCGCACGCCGGCCCGGTCGAGCGGC
GCGCGCTGCCTTGGCAGTCGGGGGAGACCTCGGCCGGGGAGGGGGAGCGC
GTGGTCTTCCTGACCACGCCGTGTACGACGCTGGAGGCCTTCGTGGACAC
CAAGGTAGAGTTCCTTCGATGGCGCGTGGTGAAGCGATGGAGCAGGCAGA
TTTTGGAGGCGTTGTTGTTCCTTCACGATCAGTCCCCGCCCGTGGTACAC
AACACGATCTACATCGACCCTTCCAAGAGCCACCTGTTCGTGGGCGGTGT
CTGCGATATCGTCGCTCCCCCTCCCGCAACGCGATCCCAAGGGATTCTGA
ACAGCAGCAGCAGCGGTAGCGGTAGCGGTGGTGGCGGCCCGAGGAGCTGG
GGAAACAAGGCGTGGGGTTTGGTGTCCGGGGGCGGCATGAGCTGCGGCGT
CGACAGCGCTGCCGCCGACGACCACAACCACCAGCGCCACGTCGGCAAGG
AGGATGACGACCCGCCCGCCGCACCGGAGGAGGAGGAAGAGGAGGAGGAG
GAAGAGGAGGAGGAGGAGGAGGAGGATGGCAGCGCGAGAGACGTTCGAGG
TTTCGGCACGGTGGTGATGGAAATGATCCTCATGGGGAGGTTGGACCCGG
CCCTGACGGAGGACGAGCGGTTCCTGGAGATGCTCTCGGTCTTCTCGGGC
TGGCCTGAGTCGGTAGTGGACTTGCTCCGGTCGTGTCGCGCGCCTATCAA
CGAGAGGCCATCGGCGGAGCAACTCCTGCGGCACCCGTTTTTGGAGCTGG
GGAATGACCTCGACGACGAGGCCGTCTACGGGGACCCCACTCTCGTCGCT
GCCGCCTTCGCCGCCGTTCACGGCCACGGAGGCTTCGCGCACCAGCTCCC
CCCCGGCGCTTCCCTTCCCGTCCCCCTCTGCCCCGCTCGCTTTGGCGGCG
GCGGCGGCGGCGGCGGCACGACGTGCAGCAACACGCCGACCAGCAGCACC
GACTTCGCGGCGTGGTCGTCGTCGTGCGGGAGCGGAGGCGGGGCGGGGCA
TGGGCACCACACCCCGTCGTGCGTGTCTACGGAGTCCCCCTCGCCGTCGT
CGCCGTCCGCGGCGCCTTCTTTCGGCGGGGTGCCGACCGTGCCGTCCCCG
CCCACCATGGCGGCGGCGGCGGCGGCGATGTCGGCGGGGGTGGGCCCGTT
CGCGTCCCAGGGCGGGCTTGGACCCTACACCGACGGCGGCGGTGGCGGCG
GTTTTGGCCTTGACTGGGGCGAGGGCTTCCCGTCGCTCCTGCCGGCCGGG
GTGACTCCGGCCGCGTACGCGAATGCGAAGGCGATCGCCGCAAGGATGCA
GCACGCGGCCCACCCTTACTCGAACCCTGCCGGCGCCGCTCCATTCCATC
ACCCCACAAACGTGTATGACGACGACTGCCAGGGCGAAGAACGAGTCGGT
CGGAACCGATCGGCCTCGGCCGGGGGGTACATGCGCAGCGGCGGCAGCCG
GAGCGAGGACACCGGGATCGGCGGGTATGGCTTCGGGGTTTCTCAGCACG
AGGAGGGGGGCGGAGGGTCGGCGGGGGGCCGGCCGCGCTCTGCGTCGGAG
GACGCGGTGTGGGACATGCTGCCCTCCGATGAGTCCCAGTGCCGCCGGCC
GTTTTCCGTGAGCGCCGTGGAAGGGCGGCACGGTTACTGA
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