mRNA_Ecto-sp13_S_contig8129.19470.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A6H5K6Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Q8_9PHAE) HSP 1 Score: 441 bits (1135), Expect = 7.280e-152 Identity = 233/262 (88.93%), Postives = 236/262 (90.08%), Query Frame = 3
Query: 24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQGERLLDEDVGDG 809
MRRRGVGVGAVKRKEKNKEAFEAVGK+VAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFA+LEIG TTMVVSVPRELSSDHSAVLLLAEASGRITEADISE+LQWEGGRPRRVLDELMQ YFFPSLW GERLLDE VGDG
Sbjct: 1 MRRRGVGVGAVKRKEKNKEAFEAVGKRVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFALLEIGKTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEELQWEGGRPRRVLDELMQEGMAWVDGDGAGPAMGGGGGRPAYFFPSLWHGERLLDEGVGDG 262
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: D8LQG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG3_ECTSI) HSP 1 Score: 387 bits (993), Expect = 3.070e-130 Identity = 209/264 (79.17%), Postives = 214/264 (81.06%), Query Frame = 3
Query: 75 KEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGV-------------------DPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQGERLLDEDVGDG 809
++AFEAVGK+VAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIG D N+GFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEIS DDVRRATSKLQVLGSGF+VLEIG TTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQ YFFPSLWQGERLLDE VGDG
Sbjct: 5 RQAFEAVGKRVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGCERGRGKERDIARGVEGAKRDRDMHNRGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISTDDVRRATSKLQVLGSGFSVLEIGKTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQEGMAWVDGDGAGPAMGGGGGRPAYFFPSLWQGERLLDEGVGDG 268
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A835YIN3_9STRA (EAP30/Vps36 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIN3_9STRA) HSP 1 Score: 273 bits (698), Expect = 1.420e-85 Identity = 155/277 (55.96%), Postives = 181/277 (65.34%), Query Frame = 3
Query: 24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIG----------------------VDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQGERLL 788
MRRRGVGV AVK + + K+AFE VG+ A EN++H+ + TFKG LE+FARKYKK INQDPAFRQQFQ MCASIG +DPLASNKGFWAEVLGVGDFYYELAVQI EVC+ATR NGGLMAL ELLQRLRA+ + KK IS DD++RA +KL+VLG GFA++E+G T MV+SVPRELS+D SAVL AE SG + + L W R RR L L Q +FFPSLW+GE LL
Sbjct: 1 MRRRGVGVAAVKHRAREKDAFEVVGQAAAAENMAHVQATLETFKGHLEDFARKYKKSINQDPAFRQQFQTMCASIGGMGKGRHGALREQCRPHNCASHLDPLASNKGFWAEVLGVGDFYYELAVQITEVCIATRETNGGLMALQELLQRLRARRS-KKSPAISLDDIKRAIAKLKVLGRGFALVEVGKTQMVLSVPRELSNDASAVLQAAEGSGHASVRALCVGLSWTQDRARRALTALAQDGMAWVDEQAPGGEPL-------FFFPSLWKGEHLL 269
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: W7TGH7_9STRA (EAP30 family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGH7_9STRA) HSP 1 Score: 254 bits (650), Expect = 1.560e-78 Identity = 137/268 (51.12%), Postives = 187/268 (69.78%), Query Frame = 3
Query: 30 RRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEAS-GRITEADISEKLQWEGGRPRRVLDELMQXXXXXXXXXXXXXXXXXXXXXXXYFFPSLWQG---ERLLDEDVGDG*NES 821
RRG GV ++KRKE+ KEAF ++GK++ EEN++H++G+MATFK SLE+FARK+KKDIN +P R +F MCA IGVDPLASNKGFWA++LGVGDFYYELAVQI+E+CL TRS+NGGL+ L +L QR++ R+K +IS +D++ A +K+ +LG+GF++L+ G TT+VVSVP ELSSDH+A+L +A+AS +T ++ +KLQW R R LD +MQ Y+FPSLW+ + D G G E
Sbjct: 2 RRGYGVKSIKRKEQVKEAFTSLGKELQEENINHVTGLMATFKESLEDFARKHKKDINANPVLRAEFNKMCAGIGVDPLASNKGFWAQLLGVGDFYYELAVQIIEICLFTRSLNGGLICLSDLTQRVQ---KRRKVDKISTEDIKIAINKVHLLGAGFSLLQSGKTTLVVSVPTELSSDHAAILQMAQASDSHVTVGELVQKLQWVEKRVRLALDLMMQAGMAWLDAQGADGSREV------YWFPSLWEEGLCQTQRDRVTGQGGREE 260
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A7S2W3J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W3J7_9STRA) HSP 1 Score: 231 bits (588), Expect = 3.570e-69 Identity = 115/219 (52.51%), Postives = 163/219 (74.43%), Query Frame = 3
Query: 24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEA-SGRITEADISEKLQWEGGRPRRVLDELM 677
MRRRGVGVG VK +EK E ++ +G ++ ++ + H + ++ F+ LE+FA KYK I DP FR++FQ MC IGVDPLASNKG W E+LGVGDFYYEL VQI+E+C+ TRS NGGL+++ +LL++LR NR RQE+S+DDV+R+ SKL+ LGSGF++L++G TTMV+SVP EL+ DHSAVL +A+ +G++T + ++L W R R L+ ++
Sbjct: 7 MRRRGVGVGRVKNREKQTEKYKQLGAELQDDRVKHATEVLGQFRTQLEDFAEKYKSSIRSDPVFRKEFQDMCMEIGVDPLASNKGLWGELLGVGDFYYELGVQIIEICIRTRSSNGGLISMRDLLRKLRKDSNRS-RQEVSSDDVKRSVSKLKKLGSGFSLLQVGRTTMVLSVPVELNRDHSAVLEVAQRHAGQVTLDGVQKELGWAEDRATRALERMV 224
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A7S3Y4V3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4V3_HETAK) HSP 1 Score: 224 bits (570), Expect = 4.260e-67 Identity = 118/197 (59.90%), Postives = 146/197 (74.11%), Query Frame = 3
Query: 27 RRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQE------ISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASG 599
RRRGVGVGAVK+K++ +AFE VGK+VA+EN H++ ++ +FK +LEEFA KYKKDI DPAFRQQFQ MCA IGVDPLASNKGFWAE+LGVGDFYYELA+Q+ EVCLA R+ GGL+A+ ELL RL A+ + I+ DDVRRA KL+ LGSG+ ++ +G MV+SVP ELS D + L A A G
Sbjct: 3 RRRGVGVGAVKKKQQQAKAFEEVGKRVADENFQHVTSLLESFKTNLEEFAVKYKKDIRADPAFRQQFQTMCAKIGVDPLASNKGFWAEILGVGDFYYELALQVTEVCLARRAATGGLLAVGELLARLEARRIQAAAARDGGATAITRDDVRRAVGKLKALGSGYQLVHLGPHEMVLSVPLELSRDTTEALAAARARG 199
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A8C3N4X4_GEOPR (Vacuolar-sorting protein SNF8 n=1 Tax=Geospiza parvula TaxID=87175 RepID=A0A8C3N4X4_GEOPR) HSP 1 Score: 223 bits (569), Expect = 1.030e-66 Identity = 118/219 (53.88%), Postives = 157/219 (71.69%), Query Frame = 3
Query: 24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQ 680
M RRGVG GA+ R++ + ++ G +AE+ L+ +S + TF+ L+ FA K+K++I + P FR QFQ MCA+IGVDPLAS KGFWAEVLGVGDFYYEL VQI+EVCLA R NGGL+ L EL Q++ KG K Q++SADD+ RA KL+VLGSGF ++ +G T +V SVP ELS DH+ VL LAE G +T ++I + L WE R ++VLD L++
Sbjct: 1 MHRRGVGAGAIARRKLTEAKYKERGTVLAEDQLAQMSKQLETFRTHLQAFASKHKQEIRRSPEFRLQFQHMCAAIGVDPLASGKGFWAEVLGVGDFYYELGVQIIEVCLALRHRNGGLITLEELQQQV-LKGRGKFAQDVSADDLLRAIRKLKVLGSGFGLIPVGGTVLVQSVPAELSMDHTVVLQLAEKKGFVTVSEIRDSLGWETERAKQVLDHLLK 218
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A067BX53_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BX53_SAPPC) HSP 1 Score: 223 bits (569), Expect = 1.100e-66 Identity = 118/220 (53.64%), Postives = 159/220 (72.27%), Query Frame = 3
Query: 24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLA-EASGRITEADISEKLQWEGGRPRRVLDELMQ 680
MRR +G+GAVK K++ K+A+E VG ++ + +L+H+ + FK +LE FA KYK I +DPAFR +FQVMC+ IGVDPLAS KGFW+E+L +GDFYYEL VQI+EVC+ TR NGGL+ + ELL RL K + Q IS DD++R+ KL+VLG GF V+E+G TM+V+VP ELS DHSA+LLLA E G +T A ++EKL W+ R L+ L++
Sbjct: 1 MRRGKMGIGAVKWKQEQKKAYEEVGTQLTQSHLAHVQAQLDVFKTNLEAFAVKYKAQIKKDPAFRMRFQVMCSKIGVDPLASQKGFWSELLDMGDFYYELGVQIIEVCILTRPKNGGLIPIHELL-RLLDKKRGLRMQRISEDDIKRSVKKLKVLGEGFQVIELGAKTMIVTVPVELSQDHSAILLLAQETQGMVTTALLAEKLLWDVNRSTIALNVLLR 219
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: UPI001E1D413E (vacuolar-sorting protein SNF8-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D413E) HSP 1 Score: 223 bits (568), Expect = 1.500e-66 Identity = 112/219 (51.14%), Postives = 158/219 (72.15%), Query Frame = 3
Query: 24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQ 680
MRRRG G+ A+K K + ++ G ++AE+ + +S M TFK LE+F K+K +I +DP FR QFQ MCAS+GVDPLAS+KGFWAE+LGVGDFYYEL VQI+EVCLAT NGGL+++ EL ++L+ K KK Q++S DD+ RA KL+ LG+GF V+ +G T M+ SVP ELS DH+AV+ A++S +T++ +++ L+WE R R L+ L++
Sbjct: 1 MRRRGAGIAAIKNKNLAQAKYKDKGNEIAEDQFAQMSKQMETFKSHLEDFTAKHKDEIRKDPEFRAQFQEMCASVGVDPLASSKGFWAEMLGVGDFYYELGVQIIEVCLATSHRNGGLISIEELKEKLK-KSRSKKSQDVSYDDLLRAIKKLKALGNGFTVIPVGGTYMIQSVPGELSMDHTAVIQQAQSSAHVTKSKLTKDLKWEEERANRALNYLVK 218
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Match: A0A1S3IXU7_LINUN (Vacuolar-sorting protein SNF8 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IXU7_LINUN) HSP 1 Score: 222 bits (566), Expect = 2.800e-66 Identity = 118/219 (53.88%), Postives = 158/219 (72.15%), Query Frame = 3
Query: 24 MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFARKYKKDINQDPAFRQQFQVMCASIGVDPLASNKGFWAEVLGVGDFYYELAVQIVEVCLATRSVNGGLMALPELLQRLRAKGNRKKRQEISADDVRRATSKLQVLGSGFAVLEIGNTTMVVSVPRELSSDHSAVLLLAEASGRITEADISEKLQWEGGRPRRVLDELMQ 680
MRRRG+G+GA+K K + F+ G ++AE+ L+ +S + F+ LE+FA K+K DI +DP FR+ FQ MCA+IGVDPLAS KGFWAE+LGVGDFYYEL VQIVEVCLAT NGGLM L EL Q+L + ++K QEIS DD+ RA KL+VLG+GF V+ +G +V SVP ELS DH+AVL LAE +G ++ + I ++L+W R R +D +++
Sbjct: 1 MRRRGIGMGAIKNKNLAQARFKDKGSELAEDQLNQMSKQLDVFRTHLEDFAAKHKDDIRKDPQFRKHFQEMCATIGVDPLASGKGFWAEMLGVGDFYYELGVQIVEVCLATSHRNGGLMDLEELRQKLLSTRGKRK-QEISIDDLMRAIKKLKVLGNGFTVIPVGGRYLVQSVPGELSMDHTAVLQLAEDTGYVSMSMIRDRLKWGEERSHRAVDYMLK 218 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8129.19470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8129.19470.1 >prot_Ecto-sp13_S_contig8129.19470.1 ID=prot_Ecto-sp13_S_contig8129.19470.1|Name=mRNA_Ecto-sp13_S_contig8129.19470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=263bp MRRRGVGVGAVKRKEKNKEAFEAVGKKVAEENLSHISGMMATFKGSLEEFback to top mRNA from alignment at Ecto-sp13_S_contig8129:1100..5855- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8129.19470.1 ID=mRNA_Ecto-sp13_S_contig8129.19470.1|Name=mRNA_Ecto-sp13_S_contig8129.19470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8129:1100..5855- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8129:1100..5855- >mRNA_Ecto-sp13_S_contig8129.19470.1 ID=mRNA_Ecto-sp13_S_contig8129.19470.1|Name=mRNA_Ecto-sp13_S_contig8129.19470.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=789bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8129:1100..5855- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |