mRNA_Ecto-sp13_S_contig12325.1946.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12325.1946.1
Unique NamemRNA_Ecto-sp13_S_contig12325.1946.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12325.1946.1 vs. uniprot
Match: D7FVC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC0_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.250e-32
Identity = 64/82 (78.05%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:    1 TQGGMWCTCILVETLDVQG-VEANRQLGTRGCRRAGALGRSSQLAAMPLAPPPRRQPTLPLQKRQVKASINAECCRGQRWAP 243
            TQGGM C CILVETLDV   VEANRQLG RG R AGALGRSSQLAA+PLAPPPRR+      KRQVKASINAECCRG R AP
Sbjct:    2 TQGGMRCMCILVETLDVVACVEANRQLGARGRRTAGALGRSSQLAAVPLAPPPRRR-----HKRQVKASINAECCRGPRRAP 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12325.1946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVC0_ECTSI4.250e-3278.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12325contigEcto-sp13_S_contig12325:1529..2851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size246
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_000540.1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.1475792-CDS-Ecto-sp13_S_contig12325:1528..15941681462656.1475792-CDS-Ecto-sp13_S_contig12325:1528..1594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12325 1529..1594 -
1681462656.163488-CDS-Ecto-sp13_S_contig12325:2256..23801681462656.163488-CDS-Ecto-sp13_S_contig12325:2256..2380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12325 2257..2380 -
1681462656.17442-CDS-Ecto-sp13_S_contig12325:2795..28391681462656.17442-CDS-Ecto-sp13_S_contig12325:2795..2839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12325 2796..2839 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.1852484-UTR-Ecto-sp13_S_contig12325:2839..28511681462656.1852484-UTR-Ecto-sp13_S_contig12325:2839..2851Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12325 2840..2851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12325.1946.1prot_Ecto-sp13_S_contig12325.1946.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12325 1529..2839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12325.1946.1

>prot_Ecto-sp13_S_contig12325.1946.1 ID=prot_Ecto-sp13_S_contig12325.1946.1|Name=mRNA_Ecto-sp13_S_contig12325.1946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MWCTCILVETLDVQGVEANRQLGTRGCRRAGALGRSSQLAAMPLAPPPRR
QPTLPLQKRQVKASINAECCRGQRWAP*
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mRNA from alignment at Ecto-sp13_S_contig12325:1529..2851-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12325.1946.1 ID=mRNA_Ecto-sp13_S_contig12325.1946.1|Name=mRNA_Ecto-sp13_S_contig12325.1946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12325:1529..2851- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCAGGGGGGCATGTGGTGCACGTGCATCTTGGTGGAGACATTGGACGT
GCAGGGGTCGCTTGGTGAGAATTATAGAAGTGTTTTGCATTCCTCTATGG
GGCTAAGCAAGATTTCAAGGTATTTTTGTGGTTGATCCGACTATTTGGAG
TATTCCTCCACTTAACCTCTCAATTTATCTCCTTTGACCTTTCCACGGAG
GCAAGGTCACGAAGAGCTCCGCGTTGTCTCCCAACATTCATTCTGTCCGC
GTGCCCTTATTTCATTCCGAGAAGTGTTCAACAATCCATCCACTATCTTA
TCTCACAGCAAGCACGTTTCTCGGCTGCGTAGTGCCAGAAAACAAGCACC
TCGAAATTAGTGGGCGTACGATGTGATTCGGATGGCTGCGGCATTTTTAC
TTTCATGCTGCATTTTTGACCTTCACGCGCAATTGACCTTGCCTGTTGAC
GAAATCACGTGGTGTGGGCAGCGTCGAGGCAAACCGCCAGCTTGGGACCC
GAGGCTGTCGGAGGGCAGGGGCACTGGGACGGTCGTCGCAGCTGGCCGCC
ATGCCACTGGCACCACCACCGCGGCGGCAGCCGACTCTACCGCTCGTCAC
ATCTGCGCCCTCACTCTCGTCGCTGGCCACCGCACCCAACTCGGCGAGGG
AGAGACAGAGACGAGCAGAGGGTGCAGTGCAGGAAGACAGCGGCAGGATC
CGCCAGGGACAGACCGCATCGCCGGCTCCTTCTTCTTCGAGCGGCAGTTT
TCGTGGCCGCCGTGGCCGAAACACTGACGAGTCTCTCCTGACCATCGCGC
GGGCCGCCAGCACCACGGCTACTGCGCGCCCCGCCCGCCGTACCAGGAGC
CGTACCACCGCTATCACCAACCCCGCTAGTGTCGCTACCGCTACCATCAG
CGCAAGCTCCATAATCAGCAACAGCAACAGCACCACTGCCGATACATGTA
CCGCTGGTACCCTCACCGCTAGCACCACCAGCAGCGGCCGCACCATCATC
TCTGATGTTGCGAACACACCCCGCTGTACCACCCCTGCGATCGCCAACAC
CACCGCTAGTACCGCTAGCACCGCTACCTCTAGCACGAGCGGTAGGTCGA
GCGCCAGCGCCAGCGCAAGCGCAAGCGCAAGCGCAAGCGACACCACCACT
ACCGCTGATAGTACCGCTGGAGCCCGCACCGGCAGTACCCCGATCGACGG
CGGGACCACTACCGCTACCACAACCAACCTCCTTTGGCGTGGTGAGTCAA
GCACTAGCAGAAGCGCCAGGTCAAAGCGTCGATCAACGCGGAGTGCTGCC
GAGGACAACGATGGGCACCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12325:1529..2851-

>mRNA_Ecto-sp13_S_contig12325.1946.1 ID=mRNA_Ecto-sp13_S_contig12325.1946.1|Name=mRNA_Ecto-sp13_S_contig12325.1946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12325:1529..2851- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTGCACGTGCATCTTGGTGGAGACATTGGACGTGCAGGGCGTCGA
GGCAAACCGCCAGCTTGGGACCCGAGGCTGTCGGAGGGCAGGGGCACTGG
GACGGTCGTCGCAGCTGGCCGCCATGCCACTGGCACCACCACCGCGGCGG
CAGCCGACTCTACCGCTCCAGAAGCGCCAGGTCAAAGCGTCGATCAACGC
GGAGTGCTGCCGAGGACAACGATGGGCACCGTAG
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