mRNA_Ecto-sp13_S_contig8118.19460.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8118.19460.1
Unique NamemRNA_Ecto-sp13_S_contig8118.19460.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8118.19460.1 vs. uniprot
Match: A0A6H5KFW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.450e-21
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = -1 
Query:  184 LRTTCSIQVWDIKGALTSTGTEDESRQLAKTSKAGISKMIHNDSSSITIDSSTISGED 357
            LRTTCSIQVWDIKGALTS GTEDESRQ+AKTSK  ISKM+HNDSSSITIDSST SGED
Sbjct: 1044 LRTTCSIQVWDIKGALTSPGTEDESRQVAKTSKDEISKMVHNDSSSITIDSSTTSGED 1101
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BLAST of mRNA_Ecto-sp13_S_contig8118.19460.1 vs. uniprot
Match: D7G633_ECTSI (WD40 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G633_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.250e-20
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = -1 
Query:  178 IQVWDIKGALTSTGTEDESRQLAKTSKAGISKMIHNDSSSITIDSSTISGEDKE 339
            ++VWDIKGALTS+GTEDESRQ+AKTSK GISKM+HNDSSSITIDSSTISGEDKE
Sbjct: 1070 VKVWDIKGALTSSGTEDESRQVAKTSKDGISKMVHNDSSSITIDSSTISGEDKE 1123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8118.19460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFW1_9PHAE1.450e-2189.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G633_ECTSI3.250e-2088.89WD40 domain containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8118contigEcto-sp13_S_contig8118:2611..2967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464084.3483248-CDS-Ecto-sp13_S_contig8118:2610..29671681464084.3483248-CDS-Ecto-sp13_S_contig8118:2610..2967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8118 2611..2967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8118.19460.1prot_Ecto-sp13_S_contig8118.19460.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8118 2611..2967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8118.19460.1

>prot_Ecto-sp13_S_contig8118.19460.1 ID=prot_Ecto-sp13_S_contig8118.19460.1|Name=mRNA_Ecto-sp13_S_contig8118.19460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
LVFHGDHGIDIDVDVVVHVVRVVCGGGGCNCGDGVVVVVIGRIVLLLVVV
LVPRILLLLLLVLAANGAAVDGDTAAVVVNHFAYSGLAGFGQLPRLVLCS
CRRQRPFDVPHLYRTRGP*
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mRNA from alignment at Ecto-sp13_S_contig8118:2611..2967+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8118.19460.1 ID=mRNA_Ecto-sp13_S_contig8118.19460.1|Name=mRNA_Ecto-sp13_S_contig8118.19460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8118:2611..2967+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTGTTTCATGGCGACCATGGCATTGATATCGACGTCGATGTCGTTGT
TCATGTTGTCAGGGTTGTCTGTGGTGGTGGTGGTTGTAATTGTGGTGATG
GTGTCGTTGTAGTTGTCATTGGCAGGATTGTTCTGTTGCTTGTCGTCGTT
CTCGTTCCTCGCATTCTCCTTCTCCTTCTCCTTGTCCTCGCCGCTAATGG
TGCTGCTGTCGATGGTGATACTGCTGCTGTCGTTGTGAATCATTTTGCTT
ATTCCGGCCTTGCTGGTTTTGGCCAGCTGCCGCGACTCGTCCTCTGTTCC
TGTCGACGTCAACGCCCCTTTGATGTCCCACACCTGTATCGAACACGTGG
TCCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8118:2611..2967+

>mRNA_Ecto-sp13_S_contig8118.19460.1 ID=mRNA_Ecto-sp13_S_contig8118.19460.1|Name=mRNA_Ecto-sp13_S_contig8118.19460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8118:2611..2967+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTGTTTCATGGCGACCATGGCATTGATATCGACGTCGATGTCGTTGT
TCATGTTGTCAGGGTTGTCTGTGGTGGTGGTGGTTGTAATTGTGGTGATG
GTGTCGTTGTAGTTGTCATTGGCAGGATTGTTCTGTTGCTTGTCGTCGTT
CTCGTTCCTCGCATTCTCCTTCTCCTTCTCCTTGTCCTCGCCGCTAATGG
TGCTGCTGTCGATGGTGATACTGCTGCTGTCGTTGTGAATCATTTTGCTT
ATTCCGGCCTTGCTGGTTTTGGCCAGCTGCCGCGACTCGTCCTCTGTTCC
TGTCGACGTCAACGCCCCTTTGATGTCCCACACCTGTATCGAACACGTGG
TCCGTAG
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