mRNA_Ecto-sp13_S_contig8114.19456.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8114.19456.1
Unique NamemRNA_Ecto-sp13_S_contig8114.19456.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8114.19456.1 vs. uniprot
Match: A0A6H5KNX0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX0_9PHAE)

HSP 1 Score: 501 bits (1290), Expect = 1.400e-163
Identity = 280/308 (90.91%), Postives = 285/308 (92.53%), Query Frame = 2 
Query:  443 MWSLMKLATPVKSPGLRAACGDNSAGGAAGNSAGGTEMTPVSLFNKSRQPGEMGGQLQSPFQSPFKNFQFSPSCLFSPPGAGTLDFPLAGGDTPGPASSSRSDIWQQMTPDRRSNQRGGGKAVRVGGAGDVQAGGGISEXXXXXXXXXXXXXXXXXXXXXXDVGSTTPGSCGKRKGKALFTDKRGPQDHHHSHALGGGGQGWCLGTPMRPVRESGVVHXXXXX--LGSVADIPATPERTTGADGSQVLPPTPQLLPPTTPSRASREATDAAXXXXGDDAAGILMGLRSPESLSFNGNIEHALFSGLDG 1360
            MWSLMKLATPVKSPGLRAACGDNSAGGAAGNSAGGTE+TPVSLFNKSRQPGEMGGQLQSPFQSPFKNFQFSPSCLFSPPGAGTLDFPLAGGDTPGPASSSRSDIWQQMTPDRRSNQRGGGKAVR G AGDVQA GG+SE         XXXXXXXXXXXXXDVG+TTPGSCGKRKGKALFTDKRGPQDHHHSHALGGGGQ WCLGTPMRPVRESGVVHXXXXX  LG VADIP TP+RTTGADGSQ+LPPTPQLLP  TPSRASREATDA XXXX  DAAGILMGLRSPESLSFNGNIEHALFSG DG
Sbjct:    1 MWSLMKLATPVKSPGLRAACGDNSAGGAAGNSAGGTEITPVSLFNKSRQPGEMGGQLQSPFQSPFKNFQFSPSCLFSPPGAGTLDFPLAGGDTPGPASSSRSDIWQQMTPDRRSNQRGGGKAVRAGSAGDVQASGGVSEDGGVVAGVAXXXXXXXXXXXXXDVGNTTPGSCGKRKGKALFTDKRGPQDHHHSHALGGGGQAWCLGTPMRPVRESGVVHXXXXXXXLGGVADIPTTPDRTTGADGSQILPPTPQLLPXXTPSRASREATDAXXXXXXXDAAGILMGLRSPESLSFNGNIEHALFSGFDG 308
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BLAST of mRNA_Ecto-sp13_S_contig8114.19456.1 vs. uniprot
Match: D7FRF0_ECTSI (Tesmin-like, animal TCX proteins are associated with development of both male and female reproductiv n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF0_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 4.980e-99
Identity = 182/197 (92.39%), Postives = 185/197 (93.91%), Query Frame = 2 
Query:  386 MENPGTPTRKPSSGKEEDAMWSLMKLATPVKSPGLRAACGDNSAGGAAGNSAGGTEMTPVSLFNKSRQPGEMGGQLQSPFQSPFKNFQFSPSCLFSPPGAGTLDFPLAGGDTPGPASSSRSDIWQQMTPDRRSNQRGGGKAVRVGGAGDVQAGGGISEXXXXXXXXXXXXXXXXXXXXXXDVGSTTPGSCGKRKGKA 976
            MENPGTPTRKPSSGKEEDAMWSLMKLATPVKSPGLRAACGDNSAGGAAGNSAGGTEMTPVSLFN SRQPGEMGGQLQSPFQSPFKNFQFSPSCLFSPPGAGTLDFPLAGGDTPGPASSSRSDIWQ MTPDRR+NQRGGGKAVRVGGAGD+QAGGG+ E    XXXXXXXXXXXXXXX   DVGST PGSCGKRKG A
Sbjct:    1 MENPGTPTRKPSSGKEEDAMWSLMKLATPVKSPGLRAACGDNSAGGAAGNSAGGTEMTPVSLFNMSRQPGEMGGQLQSPFQSPFKNFQFSPSCLFSPPGAGTLDFPLAGGDTPGPASSSRSDIWQHMTPDRRANQRGGGKAVRVGGAGDIQAGGGVGEDGGVXXXXXXXXXXXXXXX---DVGSTAPGSCGKRKGAA 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8114.19456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNX0_9PHAE1.400e-16390.91CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRF0_ECTSI4.980e-9992.39Tesmin-like, animal TCX proteins are associated wi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8114contigEcto-sp13_S_contig8114:778..4253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score327.0
Seed ortholog evalue1.2e-86
Seed eggNOG ortholog2880.D7FRF0
Model size1470
KEGG koko:K11600,ko:K21776
KEGG Pathwayko03018,ko04218,map03018,map04218
KEGG ModuleM00390,M00391
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsKOG1171@1,KOG1171@2759
Ec32 ortholog descriptiontesmin-like, animal TCX proteins are associated with development of both male and female reproductiv
Ec32 orthologEc-21_002700.1
Cds size1182
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464084.104446-UTR-Ecto-sp13_S_contig8114:777..10571681464084.104446-UTR-Ecto-sp13_S_contig8114:777..1057Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8114 778..1057 +
1681464084.1195648-UTR-Ecto-sp13_S_contig8114:1429..14351681464084.1195648-UTR-Ecto-sp13_S_contig8114:1429..1435Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8114 1430..1435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464084.1302-CDS-Ecto-sp13_S_contig8114:1435..15861681464084.1302-CDS-Ecto-sp13_S_contig8114:1435..1586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8114 1436..1586 +
1681464084.1408675-CDS-Ecto-sp13_S_contig8114:3222..42531681464084.1408675-CDS-Ecto-sp13_S_contig8114:3222..4253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8114 3223..4253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8114.19456.1prot_Ecto-sp13_S_contig8114.19456.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8114 1436..4253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8114.19456.1

>prot_Ecto-sp13_S_contig8114.19456.1 ID=prot_Ecto-sp13_S_contig8114.19456.1|Name=mRNA_Ecto-sp13_S_contig8114.19456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=394bp
MPEEEGGHEDCGVISRCSSAAASAAAVFSSRGGMENPGTPTRKPSSGKEE
DAMWSLMKLATPVKSPGLRAACGDNSAGGAAGNSAGGTEMTPVSLFNKSR
QPGEMGGQLQSPFQSPFKNFQFSPSCLFSPPGAGTLDFPLAGGDTPGPAS
SSRSDIWQQMTPDRRSNQRGGGKAVRVGGAGDVQAGGGISEDGGVVVGVA
ASGGGVGGGGSGGDVGSTTPGSCGKRKGKALFTDKRGPQDHHHSHALGGG
GQGWCLGTPMRPVRESGVVHHHHHHLGSVADIPATPERTTGADGSQVLPP
TPQLLPPTTPSRASREATDAAAAAGGDDAAGILMGLRSPESLSFNGNIEH
ALFSGLDGDGDGDGGGGTGEGGGVGGGGHRGMVERGWSDEWSSS
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mRNA from alignment at Ecto-sp13_S_contig8114:778..4253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8114.19456.1 ID=mRNA_Ecto-sp13_S_contig8114.19456.1|Name=mRNA_Ecto-sp13_S_contig8114.19456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3476bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8114:778..4253+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATTATTTTTTCGAGTAGTTTCAAATTTTTGAGGGGAACCACGTAGTTAG
GTATAGACACACATCGACCACGGTGCTGCAGCAGCAGCGCCTGAGCCGAC
CTCGAGATCGCGCGGCAGAGTCAGCATCACCTTTGAGGTCCAAGACGAAC
GGTGAGGACGTGGCGAGCCGGGGTCAGCGGTACCCTTGGGATCCAAGGCA
CGCAGTCGAAAACGTGCGTGTGCGCGCGAGAGAGACCCACAACCTCTTCT
CTCTGCTGAAACAACAACATATTCGAAGAGGTGAGGGGCGTGTGCTTTTG
TCCAGCAGAGCTACGGACGCGGACCTTGTCCAAACGCGAGCAGCGGTGAG
CGGATCCGTCCTCGCGCCAGGCCCACTGCCCGTGCAGAGGGTAGGTTCGC
TCACCCTTGTGCAATGGCTGGATTTCTTCCCTCGACGCCTTTTTCCCGCC
ATATATGCATACAAGGCTCTTGTGTTTTTTTTTTAGGGTAGTAGTAGTTT
GCGCACCATCTTCAGGTGGGGAGTCACCGACAACCCGCCTGCCTGCCAGC
CTGTTTGCTGAGCAGCTCAGTAGACGGCGATGAAAAATTCGAGGCTCTGC
TGCTGTTCTTGTCTGACATGCCTCACCCCGTGACGTATGCCTCGCGTCGC
AGCGGGCAATGCCAGAGGAGGAGGGAGGACACGAAGACTGTGGCGTCATC
TCTCGTTGCTCCTCGGCTGCTGCTTCTGCTGCTGCTGTGTTCTCAAGCCG
TGGAGGGATGGAGAACCCGGGGACGCCTACCCGTAAACCTTCCTCGGGAA
AGGAAGAAGGTGCGTGCGTGGGTTTGCATCGATGCTGCGCGTTTTAGTAC
TTGCTTGTCCGACTGGTCACAACCTTCCCCACAGTCGGATCGAATCTACC
CAACATCTGCACACAGCTGCACACTCCCATTTTGCTTTTTATTTATTTAT
TTTCTGGTCACCCGCCCGCCATGCTGGACGGCCACCCCGTCGACCACTTT
TGGGACCCAAATCGCGGGACGATGATGGCGATTATTGAGGGTGTTGCCGT
GAAATGGAAGGTTGAGAGGGGCCGAATGCTGCTACGCCTTGCCTCCAACA
CGCGAAGAGCTATCCCACATCATAGATGTGGCATTCGGCATTCGTTTCTT
TCGGCTCACCTTGGGCGTTTTTTTTTTTTCGAAATTGCCCTCGAACTTTG
AATACGGTTCTGCCAGGCACTAACTCTCACGCGCGACAGTCTACTGTGTG
TATTACACTGCTGTAGTTTCGCGCGAAAACGCACTTTTTTTTTTAACGAT
ACACACGCGCGAGCGCGCACTACTCAGCAGTTGACAGATGGTCGACGCAC
GGAAAGAGTAGAGTATGAGAGAGCGAGAGAGCGAAATACATTTAACAACA
GAGCAGAAGCCTCTTAGCATAACATACGCACACACATTTAGCGCGGTAGA
AGCCTCCCTCTCTCATGTACATCATACTCCGTATCACAGCAGTCTAAAAC
CCTCGCGAAGAAGGCGGTCCGGAGGATGGGGCATGTGGCATGGGGCCGGA
CAACCGTCGCCAAACCGCCACGGCAGCGTTTCAGTCGGTCTCTCGCCCGT
CCAACGCGCCTACTTGTACCAACCCGACAAAATATTGTACTTAGCCTACA
ACAGTCTTGGCGTCGGGTCGTGGTTGTGGCCCCGTGGAACCCATCTATAT
GTTGTACGACAGTAGAGTCGAGGGCCACCATCAAACTGTAAATTTGACGC
GAGTGAGGAAAATGCTGGCAAGCCCAACGGCTCAACAACTTATCACGACA
AACAAGAATCGACTGAGATACCCAACTCAGCCGTGGATCCTACTTCATTG
CACTCTACGTAGCAAGCGACGCGGTGGTGATGAATTAAGAAATTGAGCCT
GTTGTAGACCCCAAAATCACGTTTCCTTCTATCGAGCCGTAACTACTATT
GGTACAACACTGCGTACTAGTATTGTACATTATGTAGAGACTGGAGCGGG
AAACTTGTGTCGTGGGACCTCCTTGACGCTAACCCATACCCAACTTGTCC
CATTGTGCGCTTAATGCAACATGTTTACAGAAAGGTATCTACGTACGGAC
AACCCTGCGAATATATAGTATATCTATGTACATCATTCTTACATTACAGA
TTGAGGAGGAAGGTACGTCGAACAGCTTTGTTGTGTGTCTGTCTCTTATC
TAGCGTAACCCTAGCCCCCAACCCCACCCCGTACCCGGTACCAAAAACCA
GGCGCAATTGCTTGCGAAGGCTGCTGATCCACGCCCAACCCGGCACCAGC
GTCTCACACGAGGAAGCCGTGGTAGCGGCCACTGCTGCGCACCACAGAGG
CGTCTAACTCGCCTGCTGCGCACGCCCGTACATACGAAACACCTTCACAC
CTCTCTGCCCTGTCGCAACCTTGCCCTCGTCTCCCCCAAACGCAGATGCT
ATGTGGTCGCTGATGAAGCTCGCCACTCCCGTCAAGTCTCCTGGCCTCCG
GGCGGCTTGCGGGGACAACTCGGCCGGGGGAGCGGCGGGCAACAGCGCCG
GCGGCACGGAGATGACACCGGTGTCGTTGTTCAACAAGTCCCGACAGCCC
GGCGAGATGGGCGGGCAGCTCCAGTCGCCCTTCCAGTCGCCGTTCAAGAA
CTTCCAGTTCTCCCCGAGCTGCCTCTTCAGCCCCCCCGGGGCGGGGACCC
TGGACTTCCCGCTCGCCGGCGGCGACACGCCGGGGCCGGCGAGCTCGAGC
CGCAGCGATATCTGGCAGCAGATGACTCCCGATCGCCGCTCGAACCAGAG
GGGAGGAGGGAAGGCGGTGCGGGTGGGGGGCGCGGGGGACGTACAAGCGG
GTGGAGGCATCAGCGAAGACGGAGGGGTTGTTGTGGGAGTGGCTGCCTCC
GGCGGCGGGGTCGGCGGAGGCGGTAGCGGCGGCGATGTCGGTAGCACCAC
GCCCGGGAGCTGCGGCAAGAGGAAAGGCAAGGCTCTTTTCACGGACAAGC
GGGGGCCACAGGACCACCACCATTCTCACGCCCTCGGCGGCGGCGGGCAG
GGCTGGTGCTTGGGCACGCCGATGAGGCCTGTCCGGGAGAGCGGGGTCGT
GCACCACCACCACCACCACCTCGGCAGCGTGGCCGACATCCCGGCGACCC
CGGAACGAACGACGGGGGCCGACGGTTCCCAGGTCCTGCCGCCGACCCCT
CAGCTATTGCCACCGACCACGCCATCCCGCGCCTCCCGCGAGGCCACGGA
CGCGGCTGCGGCGGCGGGCGGCGATGATGCGGCGGGGATCTTGATGGGGC
TGCGCAGCCCCGAGAGCTTGTCGTTTAACGGCAACATCGAACATGCGTTG
TTTTCTGGCCTTGATGGTGACGGTGACGGTGACGGCGGCGGCGGTACCGG
CGAAGGTGGCGGCGTTGGCGGCGGTGGTCACCGGGGTATGGTCGAAAGAG
GGTGGAGTGACGAATGGAGCAGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8114:778..4253+

>mRNA_Ecto-sp13_S_contig8114.19456.1 ID=mRNA_Ecto-sp13_S_contig8114.19456.1|Name=mRNA_Ecto-sp13_S_contig8114.19456.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8114:778..4253+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAGAGGAGGAGGGAGGACACGAAGACTGTGGCGTCATCTCTCGTTG
CTCCTCGGCTGCTGCTTCTGCTGCTGCTGTGTTCTCAAGCCGTGGAGGGA
TGGAGAACCCGGGGACGCCTACCCGTAAACCTTCCTCGGGAAAGGAAGAA
GATGCTATGTGGTCGCTGATGAAGCTCGCCACTCCCGTCAAGTCTCCTGG
CCTCCGGGCGGCTTGCGGGGACAACTCGGCCGGGGGAGCGGCGGGCAACA
GCGCCGGCGGCACGGAGATGACACCGGTGTCGTTGTTCAACAAGTCCCGA
CAGCCCGGCGAGATGGGCGGGCAGCTCCAGTCGCCCTTCCAGTCGCCGTT
CAAGAACTTCCAGTTCTCCCCGAGCTGCCTCTTCAGCCCCCCCGGGGCGG
GGACCCTGGACTTCCCGCTCGCCGGCGGCGACACGCCGGGGCCGGCGAGC
TCGAGCCGCAGCGATATCTGGCAGCAGATGACTCCCGATCGCCGCTCGAA
CCAGAGGGGAGGAGGGAAGGCGGTGCGGGTGGGGGGCGCGGGGGACGTAC
AAGCGGGTGGAGGCATCAGCGAAGACGGAGGGGTTGTTGTGGGAGTGGCT
GCCTCCGGCGGCGGGGTCGGCGGAGGCGGTAGCGGCGGCGATGTCGGTAG
CACCACGCCCGGGAGCTGCGGCAAGAGGAAAGGCAAGGCTCTTTTCACGG
ACAAGCGGGGGCCACAGGACCACCACCATTCTCACGCCCTCGGCGGCGGC
GGGCAGGGCTGGTGCTTGGGCACGCCGATGAGGCCTGTCCGGGAGAGCGG
GGTCGTGCACCACCACCACCACCACCTCGGCAGCGTGGCCGACATCCCGG
CGACCCCGGAACGAACGACGGGGGCCGACGGTTCCCAGGTCCTGCCGCCG
ACCCCTCAGCTATTGCCACCGACCACGCCATCCCGCGCCTCCCGCGAGGC
CACGGACGCGGCTGCGGCGGCGGGCGGCGATGATGCGGCGGGGATCTTGA
TGGGGCTGCGCAGCCCCGAGAGCTTGTCGTTTAACGGCAACATCGAACAT
GCGTTGTTTTCTGGCCTTGATGGTGACGGTGACGGTGACGGCGGCGGCGG
TACCGGCGAAGGTGGCGGCGTTGGCGGCGGTGGTCACCGGGGTATGGTCG
AAAGAGGGTGGAGTGACGAATGGAGCAGCAGC
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