mRNA_Ecto-sp13_S_contig8114.19457.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8114.19457.1
Unique NamemRNA_Ecto-sp13_S_contig8114.19457.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8114.19457.1 vs. uniprot
Match: A0A6H5KNX0_9PHAE (CRC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.690e-31
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 ALVRDAPHTAPVKRYRSSGPVSLRDAHCTGSFTIERGTLIRSSSSCSSSVGGGVTGSNGVRSGGAGS 201
            ALV DAPHTAPVKRYRSSGPVSLRDAHCTGSFTIERGTLIRSSSSCSSSVGGGVTGSNGVRSGGAGS
Sbjct:  341 ALVSDAPHTAPVKRYRSSGPVSLRDAHCTGSFTIERGTLIRSSSSCSSSVGGGVTGSNGVRSGGAGS 407
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BLAST of mRNA_Ecto-sp13_S_contig8114.19457.1 vs. uniprot
Match: D7FRF0_ECTSI (Tesmin-like, animal TCX proteins are associated with development of both male and female reproductiv n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF0_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 2.070e-5
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 2 
Query:  182 GAAAPVAQERARVPAAVAATRTRTLVPAKRLAAAPLAR 295
            GAAAPVAQERARVPAA    RTRTLVPAKRLAAAPLAR
Sbjct:  192 GAAAPVAQERARVPAAXXXXRTRTLVPAKRLAAAPLAR 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8114.19457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNX0_9PHAE7.690e-3198.51CRC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRF0_ECTSI2.070e-589.47Tesmin-like, animal TCX proteins are associated wi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8114contigEcto-sp13_S_contig8114:4287..4673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size389
Hectar predicted targeting categoryother localisation
Exons1
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464084.060288-CDS-Ecto-sp13_S_contig8114:4286..46731681464084.060288-CDS-Ecto-sp13_S_contig8114:4286..4673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8114 4287..4673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8114.19457.1prot_Ecto-sp13_S_contig8114.19457.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8114 4287..4673 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8114.19457.1

>prot_Ecto-sp13_S_contig8114.19457.1 ID=prot_Ecto-sp13_S_contig8114.19457.1|Name=mRNA_Ecto-sp13_S_contig8114.19457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
ALVRDAPHTAPVKRYRSSGPVSLRDAHCTGSFTIERGTLIRSSSSCSSSV
GGGVTGSNGVRSGGAGSAGKGKGAGSSCRNENKNAGAGEASSRGASCQVR
SRGKSIEEEPLSPPKPELSPGPPALAMSR
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mRNA from alignment at Ecto-sp13_S_contig8114:4287..4673+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8114.19457.1 ID=mRNA_Ecto-sp13_S_contig8114.19457.1|Name=mRNA_Ecto-sp13_S_contig8114.19457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8114:4287..4673+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTGGTGAGGGACGCGCCCCACACGGCGCCTGTGAAGCGGTACAGGAG
CAGCGGACCCGTCTCGCTGAGAGACGCCCACTGCACGGGCTCCTTCACGA
TCGAGCGAGGCACGCTCATTCGATCGTCGTCGAGCTGCTCGTCCTCGGTC
GGGGGCGGCGTCACTGGCTCGAACGGCGTCAGGAGCGGCGGCGCCGGTAG
CGCAGGAAAGGGCAAGGGTGCCGGCAGCAGTTGCCGCAACGAGAACAAGA
ACGCTGGTGCCGGCGAAGCGTCTAGCCGCGGCGCCTCTTGCCAGGTGAGA
AGCCGCGGGAAAAGCATCGAAGAAGAACCCCTCTCTCCGCCCAAGCCGGA
GCTCTCGCCTGGCCCGCCCGCCCTCGCCATGTCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8114:4287..4673+

>mRNA_Ecto-sp13_S_contig8114.19457.1 ID=mRNA_Ecto-sp13_S_contig8114.19457.1|Name=mRNA_Ecto-sp13_S_contig8114.19457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8114:4287..4673+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTGGTGAGGGACGCGCCCCACACGGCGCCTGTGAAGCGGTACAGGAG
CAGCGGACCCGTCTCGCTGAGAGACGCCCACTGCACGGGCTCCTTCACGA
TCGAGCGAGGCACGCTCATTCGATCGTCGTCGAGCTGCTCGTCCTCGGTC
GGGGGCGGCGTCACTGGCTCGAACGGCGTCAGGAGCGGCGGCGCCGGTAG
CGCAGGAAAGGGCAAGGGTGCCGGCAGCAGTTGCCGCAACGAGAACAAGA
ACGCTGGTGCCGGCGAAGCGTCTAGCCGCGGCGCCTCTTGCCAGGTGAGA
AGCCGCGGGAAAAGCATCGAAGAAGAACCCCTCTCTCCGCCCAAGCCGGA
GCTCTCGCCTGGCCCGCCCGCCCTCGCCATGTCGAGG
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