mRNA_Ecto-sp13_S_contig81119.19455.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig81119.19455.1
Unique NamemRNA_Ecto-sp13_S_contig81119.19455.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A5Q4Z200_9BURK (UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Paraburkholderia dioscoreae TaxID=2604047 RepID=A0A5Q4Z200_9BURK)

HSP 1 Score: 57.0 bits (136), Expect = 1.000e-9
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   94 GVDDGARTHDNRNHNPGLYQLSYAHH 171
            GV DGARTHDNRNHNPGLYQLSY+HH
Sbjct:   17 GVADGARTHDNRNHNPGLYQLSYSHH 42
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A2R5F553_9PROT (UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Novimethylophilus kurashikiensis TaxID=1825523 RepID=A0A2R5F553_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 1.880e-9
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   79 LPRKSGVDDGARTHDNRNHNPGLYQLSYAHH 171
            L +  GV DG RTHDNRNHNPGLYQLSY+HH
Sbjct:    8 LKKIDGVADGTRTHDNRNHNPGLYQLSYSHH 38
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A381SI43_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381SI43_9ZZZZ)

HSP 1 Score: 58.5 bits (140), Expect = 2.100e-9
Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:   91 SGVDDGARTHDNRNHNPGLYQLSYAHH 171
            SGV DGARTHDNRNHNPGLYQLSY HH
Sbjct:    2 SGVTDGARTHDNRNHNPGLYQLSYGHH 28
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A1R4HBU4_9GAMM (Uncharacterized protein n=1 Tax=Crenothrix polyspora TaxID=360316 RepID=A0A1R4HBU4_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 2.560e-9
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   94 GVDDGARTHDNRNHNPGLYQLSYAHH 171
            GV+DGART DNRNHNPGLYQLSYAHH
Sbjct:    9 GVNDGARTRDNRNHNPGLYQLSYAHH 34
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A0E4BWJ6_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=A0A0E4BWJ6_9BRAD)

HSP 1 Score: 56.6 bits (135), Expect = 4.880e-9
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 WCGRRDLNSHAVKHWNLNPACLPIPPLPRK 90
            WCGRRD N H  +HWNLNPA LP+PP PR+
Sbjct:   48 WCGRRDSNPHNFRHWNLNPARLPVPPRPRE 77
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A0W0TJK3_LEGER (Uncharacterized protein n=1 Tax=Legionella erythra TaxID=448 RepID=A0A0W0TJK3_LEGER)

HSP 1 Score: 56.2 bits (134), Expect = 7.410e-9
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:   91 SGVDDGARTHDNRNHNPGLYQLSYAHH 171
            +GV+DG RTHDNR+HNPGLYQLSYAHH
Sbjct:   64 NGVNDGTRTHDNRDHNPGLYQLSYAHH 90
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A1R4GYM6_9GAMM (Uncharacterized protein n=1 Tax=Crenothrix polyspora TaxID=360316 RepID=A0A1R4GYM6_9GAMM)

HSP 1 Score: 56.2 bits (134), Expect = 8.300e-9
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 1 
Query:   94 GVDDGARTHDNRNHNPGLYQLSYAHH 171
            GV+DGART DNRNHNPGLYQLSYAHH
Sbjct:    9 GVNDGARTRDNRNHNPGLYQLSYAHH 34
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A0W0U2Z3_9GAMM (Uncharacterized protein n=1 Tax=Legionella geestiana TaxID=45065 RepID=A0A0W0U2Z3_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 2.220e-8
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   88 KSGVDDGARTHDNRNHNPGLYQLSYAHH 171
            K GV+DG RTHDNR+HNPGLYQLSYAHH
Sbjct:   57 KDGVNDGTRTHDNRDHNPGLYQLSYAHH 84
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BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A0A1H4A4_9BURK (Membrane GTPase LepA n=1 Tax=Burkholderiales bacterium GJ-E10 TaxID=1469502 RepID=A0A0A1H4A4_9BURK)

HSP 1 Score: 54.7 bits (130), Expect = 2.270e-8
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   91 SGVDDGARTHDNRNHNPGLYQLSYAH 168
            SGV DG RTHDNRNHNPGLYQLSY+H
Sbjct:   42 SGVADGTRTHDNRNHNPGLYQLSYSH 67
[Close]
BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Match: A0A382U2B3_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382U2B3_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 4.510e-8
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = -3 
Query:   86 GGRSSVGRAPDCDSGCRGFEPHRPPHFF 169
            GGRSSVGRAP CD G RGFE HRPPH+ 
Sbjct:    5 GGRSSVGRAPGCDPGRRGFESHRPPHYI 32
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig81119.19455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5Q4Z200_9BURK1.000e-992.31UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Parabu... [more]
A0A2R5F553_9PROT1.880e-977.42UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Novime... [more]
A0A381SI43_9ZZZZ2.100e-992.59Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A1R4HBU4_9GAMM2.560e-992.31Uncharacterized protein n=1 Tax=Crenothrix polyspo... [more]
A0A0E4BWJ6_9BRAD4.880e-970.00Uncharacterized protein n=1 Tax=Bradyrhizobium dia... [more]
A0A0W0TJK3_LEGER7.410e-985.19Uncharacterized protein n=1 Tax=Legionella erythra... [more]
A0A1R4GYM6_9GAMM8.300e-992.31Uncharacterized protein n=1 Tax=Crenothrix polyspo... [more]
A0A0W0U2Z3_9GAMM2.220e-885.71Uncharacterized protein n=1 Tax=Legionella geestia... [more]
A0A0A1H4A4_9BURK2.270e-888.46Membrane GTPase LepA n=1 Tax=Burkholderiales bacte... [more]
A0A382U2B3_9ZZZZ4.510e-878.57Uncharacterized protein n=1 Tax=marine metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig81119contigEcto-sp13_S_contig81119:383..556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score62.4
Seed ortholog evalue8.1e-08
Seed eggNOG ortholog1120963.KB894491_gene1107
Model size175
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs1P9N5@1224,1SU0Y@1236,2DE24@1,2ZK69@2
Cds size174
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464084.0270164-CDS-Ecto-sp13_S_contig81119:382..5561681464084.0270164-CDS-Ecto-sp13_S_contig81119:382..556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig81119 383..556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig81119.19455.1prot_Ecto-sp13_S_contig81119.19455.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig81119 383..556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig81119.19455.1

>prot_Ecto-sp13_S_contig81119.19455.1 ID=prot_Ecto-sp13_S_contig81119.19455.1|Name=mRNA_Ecto-sp13_S_contig81119.19455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
WCGRRDLNSHAVKHWNLNPACLPIPPLPRKSGVDDGARTHDNRNHNPGLY
QLSYAHH*
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mRNA from alignment at Ecto-sp13_S_contig81119:383..556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig81119.19455.1 ID=mRNA_Ecto-sp13_S_contig81119.19455.1|Name=mRNA_Ecto-sp13_S_contig81119.19455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81119:383..556+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTGCGGAAGGAGAGACTTGAACTCTCACGCCGTGAAGCACTGGAACCT
AAATCCAGCGTGTCTACCAATTCCACCACTCCCGCGAAAAAGTGGGGTGG
ACGATGGGGCTCGAACCCACGACAACCGGAATCACAATCCGGGGCTCTAC
CAACTGAGCTACGCCCACCACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig81119:383..556+

>mRNA_Ecto-sp13_S_contig81119.19455.1 ID=mRNA_Ecto-sp13_S_contig81119.19455.1|Name=mRNA_Ecto-sp13_S_contig81119.19455.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig81119:383..556+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTGCGGAAGGAGAGACTTGAACTCTCACGCCGTGAAGCACTGGAACCT
AAATCCAGCGTGTCTACCAATTCCACCACTCCCGCGAAAAAGTGGGGTGG
ACGATGGGGCTCGAACCCACGACAACCGGAATCACAATCCGGGGCTCTAC
CAACTGAGCTACGCCCACCACTGA
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