mRNA_Ecto-sp13_S_contig8109.19452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8109.19452.1
Unique NamemRNA_Ecto-sp13_S_contig8109.19452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8109.19452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8109contigEcto-sp13_S_contig8109:4242..5908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size299
Hectar predicted targeting categoryother localisation
Exons3
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.722195-UTR-Ecto-sp13_S_contig8109:4241..42561681464083.722195-UTR-Ecto-sp13_S_contig8109:4241..4256Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8109 4242..4256 -
1681464083.760909-UTR-Ecto-sp13_S_contig8109:5285..53341681464083.760909-UTR-Ecto-sp13_S_contig8109:5285..5334Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8109 5286..5334 -
1681464083.7714818-UTR-Ecto-sp13_S_contig8109:5880..59081681464083.7714818-UTR-Ecto-sp13_S_contig8109:5880..5908Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8109 5881..5908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.739064-CDS-Ecto-sp13_S_contig8109:4256..44181681464083.739064-CDS-Ecto-sp13_S_contig8109:4256..4418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8109 4257..4418 -
1681464083.7503574-CDS-Ecto-sp13_S_contig8109:5240..52851681464083.7503574-CDS-Ecto-sp13_S_contig8109:5240..5285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8109 5241..5285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8109.19452.1prot_Ecto-sp13_S_contig8109.19452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8109 4257..5285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8109.19452.1

>prot_Ecto-sp13_S_contig8109.19452.1 ID=prot_Ecto-sp13_S_contig8109.19452.1|Name=mRNA_Ecto-sp13_S_contig8109.19452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MDFVAPVKVDKWLRKIQSTASCCKIQTEKSAGGYIHHAQRGTNPGSRLRD
GEQKQRTPGPMPTFFFGA*
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mRNA from alignment at Ecto-sp13_S_contig8109:4242..5908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8109.19452.1 ID=mRNA_Ecto-sp13_S_contig8109.19452.1|Name=mRNA_Ecto-sp13_S_contig8109.19452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1667bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8109:4242..5908- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGACTCCCCACTGCCCCGAAAACAGGGTGAGTCCTCGACCGGGGACAA
AGGTGCCGAAGGACCAGGCCCAACGACCCATAAGTCAGGAATGAATCGGT
CTCTAGCGTGCTCACATTTTTTTTTTGTGTGTGTGATAGGAATGGTAACG
GGGCTACACGCCAGGACTGCTTGGAGGGCAAGAATGGGGATGCCACAAGG
CGGCTACCCAATCCTATCGCGGAGAAAGAAATATCCTGGGAAATTCCCCC
GCACGATCACAGTGGCCCCAAAAATGGGCCGTTCGTTCAGAGAACTAACG
AAGCAGACTGAGGCACTGGTTTGCACCTAGAAACGCCCATTTTCTGTTAC
CATGGGTGCGTCTCGTAACTCGCAATCTCGTTTTTATCTGACTATGGTGC
TTCGTGCCCAGTGCAGGCTCGCGCGCTGTTCGCCCGGTGCCCGAGTACTA
AGCAAAACTCCGACCCCGGATTGTCCTCAGATCGATCCCGAACCAGCACG
ATAACCAGACCCACTGCTGCGTCATCTCGACATCTGTGCGCTGGACACTG
CTCCTCGCTCCTTCACTTCAACAGAGGCTTACAGGAGGAGACGGGGGGAA
GTGTCCGACGATTCCGAGCCCAAATGGATTTTGTAGCACCTGTTAAAGTT
GACAAATGGCTACGGAAGGTGAGAGAGGGGTCAGGCAGTATACCTGTTGT
GACGGGAGATCTGCGTGCCGGGGTAACGGGGGTGGTGTTGCTTCATCTAC
CTGATGCCGTCCGTGGATAGGGATCCTTTCACGTCATTTCCTCGTCGGAA
AGGTGATTCCAGTCGGGGGGGGGTGCTGTGCAAAAATACGCCCAGTTGTT
GAATGCATGGGCAACACCAAGGTAGATGGTTTTCACAATGGCTGTGTGTT
TGAAAGTCGATCGATATTTCGGAAAAAATTGTTCAAGACCTGGTTGCTGA
GGGGGAAGGCAAACGGTACTGTGTACATATGTACCCCTCTTTCGATACTG
CCTTGAGTGAGTTGTCATCTCAGCTTCACACGAACCGATGTCGGTGTACA
TTCCACCATGTGAAAGAGTCTCGGCTGTTTTGCGTTGAACCACGGACATT
CGTTACTTCCCATGAAGAGTACGGTCACGGGGAGGTACTCGATCGAGGCC
AGATTTTTCAAACGATACGAATATTGTCATCAACAACACTTGGTTTGTTG
GTTGGTTGCGCCAGTTTAGGCCCGAACAAAAGGGCTGACCGGGGCGTTGG
TCAACTCTTATGTGACTACGTGCACGATAGCAGCACGATAACTTTGTGTG
CCGAAAAATCGCTGGCGTGCCTCGCTTAAGAGAAAAAAAATTGCGCCGTT
GAGGCCAGCATCGAGACCAAGAGGCAGCCCATCACTCAAGCACGCATATG
AGCAATATGCGCAGGGGTACACGCAGTAGTACTGCCATTTGTACAGCATT
GATGTCTCTGATGTGGGACATGTATGCCCTTTTTTTCCAGATCCAATCTA
CGGCCTCCTGCTGCAAGATCCAAACGGAAAAATCCGCGGGAGGGTACATA
CATCACGCTCAACGTGGGACAAACCCGGGGTCCCGCTTGCGCGATGGAGA
GCAGAAACAACGCACACCGGGGCCGATGCCCACGTTTTTCTTCGGTGCGT
GATGTGGTCATGATTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8109:4242..5908-

>mRNA_Ecto-sp13_S_contig8109.19452.1 ID=mRNA_Ecto-sp13_S_contig8109.19452.1|Name=mRNA_Ecto-sp13_S_contig8109.19452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8109:4242..5908- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTTTGTAGCACCTGTTAAAGTTGACAAATGGCTACGGAAGATCCA
ATCTACGGCCTCCTGCTGCAAGATCCAAACGGAAAAATCCGCGGGAGGGT
ACATACATCACGCTCAACGTGGGACAAACCCGGGGTCCCGCTTGCGCGAT
GGAGAGCAGAAACAACGCACACCGGGGCCGATGCCCACGTTTTTCTTCGG
TGCGTGA
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