mRNA_Ecto-sp13_S_contig12324.1945.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12324.1945.1
Unique NamemRNA_Ecto-sp13_S_contig12324.1945.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: D7FPF8_ECTSI (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPF8_ECTSI)

HSP 1 Score: 471 bits (1211), Expect = 6.280e-166
Identity = 226/230 (98.26%), Postives = 228/230 (99.13%), Query Frame = 1 
Query:    1 PTEFNTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFESGVDFDEAMP 690
            PTEFNTCVFKLEVKNPAD ADMPD MPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERF+GEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDS+QVLRQKCDSMIAEVEAFESGVDFDEAMP
Sbjct:  132 PTEFNTCVFKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFESGVDFDEAMP 361
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: A0A6H5JLW5_9PHAE (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW5_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 6.580e-131
Identity = 182/186 (97.85%), Postives = 186/186 (100.00%), Query Frame = 1 
Query:  133 GAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFESGVDFDEAMP 690
            GAMEWCPHGDQVERF+GEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLK+EVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDS+QVLRQKCDSMIAEVEAFESG+DFDEAMP
Sbjct:  178 GAMEWCPHGDQVERFEGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKQEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEVEAFESGIDFDEAMP 363
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: A0A7S2RJI0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJI0_9STRA)

HSP 1 Score: 248 bits (632), Expect = 4.400e-78
Identity = 117/218 (53.67%), Postives = 160/218 (73.39%), Query Frame = 1 
Query:   13 NTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFESG 666
            NT VF L+V+    A    D+ P G++       TM+V+S  ++W P  DQ E F    G+RPVH+DIL+AKLRPGQ I  E HC++G+GKDHAKFSPVATASYRLLP + + +EV+G+ AE+L A CP+NVFDIEDLGG  +RA  ARPRDCTMCRECIR+ GW ++V L R ADH+IF +E+VGML P++++K+++++LR+KC   + E++   +G
Sbjct:  132 NTVVFGLDVQCSRSA----DTRPPGSTEPY----TMSVYSKHLQWLPQADQAEEFPD--GIRPVHEDILLAKLRPGQHIKLEAHCQRGVGKDHAKFSPVATASYRLLPDIVVADEVKGETAEQLKAMCPMNVFDIEDLGGE-RRATAARPRDCTMCRECIRQEGWDERVKLYRAADHYIFKVEAVGMLAPRDIVKEAIRILREKCTDFLGELQGDPAG 338
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: A0A6G0XIR3_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIR3_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.390e-76
Identity = 124/228 (54.39%), Postives = 154/228 (67.54%), Query Frame = 1 
Query:    4 TEFNTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFESGVDFDEAM 687
            T+ NT VFKL+V   AD  D PD +   T+ +        ++S  +EW P G Q ERF   G +RPV +DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRLLP +     V G +A+ L   CP+NVFDIED+      A  ARPR+CTMCRECIR PGWSDKV L RV+DHFIF +E+VGMLPP++LL ++++VL  KCD  +  + A +  +  DE M
Sbjct:  119 TDENTLVFKLDVTCTADPDD-PDDISKATNSS--------IYSRHLEWVPQGLQEERF---GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPVTGADAKTLQKTCPMNVFDIEDMA-----AVAARPRNCTMCRECIRAPGWSDKVELGRVSDHFIFSVETVGMLPPEDLLPEALKVLMTKCDVAVESLNAMDDELAEDETM 329
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: A0A024TZC9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TZC9_9STRA)

HSP 1 Score: 240 bits (613), Expect = 1.680e-75
Identity = 126/234 (53.85%), Postives = 158/234 (67.52%), Query Frame = 1 
Query:    4 TEFNTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFESGV------DFDEAM 687
            T+ NT VFKL+V   AD +D P+ +   T+ +        V+S  +EW P G Q ERF   G +RPV +DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRLLP +T    V G +A+ L   CP+NVFDIEDL      A  ARPR+CTMCRECIR PGWSDKV + RV+DHFIF +E+VGMLPP++LL ++++VL  KCD  +  + A +  +      D D+AM
Sbjct:  119 TDENTLVFKLDVTCTADPSD-PNDISKATNAS--------VYSRHLEWVPQGLQEERF---GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEITFPAPVVGADAKTLQKTCPMNVFDIEDLA-----AVAARPRNCTMCRECIRAPGWSDKVKMGRVSDHFIFSVETVGMLPPEDLLPEAIKVLVAKCDVAVESLNAVDDELRENADEDEDDAM 335
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: A0A1V9ZSM6_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZSM6_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.590e-73
Identity = 121/225 (53.78%), Postives = 152/225 (67.56%), Query Frame = 1 
Query:    4 TEFNTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFESGVDFD 678
            T+ NT VFKL+V   AD  D P+ +   T+ +        V+S  +EW P G Q ERF   G +RPV +DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRLLP +     ++GQ+A+ L   CP+NVFDIED       A VARPRDCTMCRECIR PGW +KV L RV+DHFIF +E+VGML P+ELL ++++VL  KCD  +  + + +  +  D
Sbjct:  119 TDENTLVFKLDVVCEADKDD-PEDISKATNAS--------VYSRHLEWIPQGMQEERF---GNIRPVSEDILIAKLRPGQCIALEAHCRKGVGKDHAKFSPVATASYRLLPDIQFPAPIKGQDAKTLQKTCPMNVFDIED-----SHAVVARPRDCTMCRECIRAPGWDEKVKLGRVSDHFIFSVETVGMLKPEELLPEALKVLMSKCDVALESLNSIDDELTND 326
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: A0A836C8K2_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K2_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.800e-73
Identity = 123/223 (55.16%), Postives = 149/223 (66.82%), Query Frame = 1 
Query:    7 EFNTCVFKLEVK--NPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIED---LGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFE 660
            E NT VF+L  +   PADA              A P  T  V+SG  EW P G Q ERF    GLRP+HDDIL+AKLR GQEI  EMHCRKG+GKDHAK+SPVATASYRL P +TL + V G  A ELVA CP+NVFDIED       G  A VARPRDCTMCRECIR PGW+++V+L+R ++HFIF +E  G LP + ++K++V+VLR K   ++A  E  E
Sbjct:  151 ENNTVVFRLHRRCVRPADADP------------AAPPYTEGVYSGHFEWIPQGTQAERFPD--GLRPLHDDILLAKLRAGQEIALEMHCRKGVGKDHAKYSPVATASYRLAPRITLAQRVAGAAARELVAACPMNVFDIEDGEXXXXXGAVAVVARPRDCTMCRECIRPPGWAERVTLARESNHFIFSVEPCGALPARVIVKEAVRVLRAKAHGLLAYFEEVE 359
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: W4GC85_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GC85_9STRA)

HSP 1 Score: 234 bits (598), Expect = 3.380e-73
Identity = 122/219 (55.71%), Postives = 148/219 (67.58%), Query Frame = 1 
Query:    4 TEFNTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFE 660
            T+ NT VFKL+V   AD  D     P   S A       +V+S  +EW P G Q ERF   G +RPV +DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRLLP ++    V G +A+ L   CP+NVFDIEDL      A  ARPR+CTMCRECIR PGWSDKV L RV+DHFIF +E+VGML P++LL ++++VL  KCD  +  + A +
Sbjct:  119 TDENTLVFKLDVTCTADPND-----PADISKAT----NASVYSRHLEWVPQGLQEERF---GSIRPVSEDILIAKLRPGQTIALEAHCRKGVGKDHAKFSPVATASYRLLPEISFPAPVVGADAKTLQKTCPMNVFDIEDLA-----AVAARPRNCTMCRECIRAPGWSDKVKLGRVSDHFIFSVETVGMLRPEDLLPEAIKVLVAKCDVAVESLNAVD 320
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BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: A0A6B2LAX2_9EUKA (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAX2_9EUKA)

HSP 1 Score: 230 bits (586), Expect = 5.460e-72
Identity = 119/223 (53.36%), Postives = 148/223 (66.37%), Query Frame = 1 
Query:    4 TEFNTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFESGVD 672
            T+ NT  F L+VK      D  +S P    Y         V+SG M W PHG Q + F GE  ++PVHDDILIAKLRPGQEI     C KGIGKDHAKFSPVATA+YRLLP VT+  ++ G +A+ LV KCP+NVFDIEDLGG  K+AKV  PR+C+MCRECIRE GW   V L R  DHFIF IES  +LPPK L +++V+ L +K +++  E++   +  D
Sbjct:   77 TDKNTLEFTLKVKC-EKKKDYKESYPDHLKY-----EHSKVYSGDMVWVPHGVQADEFVGENAIKPVHDDILIAKLRPGQEIDLSARCCKGIGKDHAKFSPVATATYRLLPEVTIIGDLTGDKADALVKKCPMNVFDIEDLGGK-KKAKVVNPRNCSMCRECIREVGWDKLVKLRRKKDHFIFHIESTQILPPKILFEEAVKKLLEKIETLRVELQKLATPGD 292
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Match: A0A662X4Y9_9STRA (DNA-directed RNA polymerases I and III subunit RPAC1 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4Y9_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.060e-71
Identity = 121/226 (53.54%), Postives = 152/226 (67.26%), Query Frame = 1 
Query:    4 TEFNTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKDSVQVLRQKCDSMIAEVEAFESGVDFDE 681
            T+ NT VFKL+V    D A      P   S A       +V+S  +EW P G+Q ERF   G +RPVH+DILIAKLRPGQ I  E HCRKG+GKDHAKFSPVATASYRL+P V L E VEG +A+ LV +C + +FDIED+GG    A V   R CTMCR CIREPGW++K+ L R +DHFIF +ESVGM+ P+ELL +++ VL +KC+  +   E+F    + DE
Sbjct:  126 TDENTIVFKLDVTCAYDPAH-----PKDLSKAV----HASVYSRDLEWVPQGNQEERF---GAIRPVHEDILIAKLRPGQSIALEAHCRKGVGKDHAKFSPVATASYRLMPHVELTEAVEGDDAKRLVEECQMGLFDIEDMGGV-PTAVVKDQRACTMCRNCIREPGWNEKIRLGRQSDHFIFSVESVGMIKPEELLPEALNVLMEKCNVAL---ESFNQTDEDDE 335
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12324.1945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPF8_ECTSI6.280e-16698.26DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6H5JLW5_9PHAE6.580e-13197.85DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A7S2RJI0_9STRA4.400e-7853.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0XIR3_9STRA3.390e-7654.39DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A024TZC9_9STRA1.680e-7553.85DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A1V9ZSM6_9STRA1.590e-7353.78DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A836C8K2_9STRA1.800e-7355.16DNA-directed RNA polymerases I and III subunit RPA... [more]
W4GC85_9STRA3.380e-7355.71DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A6B2LAX2_9EUKA5.460e-7253.36DNA-directed RNA polymerases I and III subunit RPA... [more]
A0A662X4Y9_9STRA2.060e-7153.54DNA-directed RNA polymerases I and III subunit RPA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12324contigEcto-sp13_S_contig12324:189..3039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score471.1
Seed ortholog evalue3e-130
Seed eggNOG ortholog2880.D7FPF8
Preferred namePOLR1C
Model size693
KEGG rclassRC00055,RC00523,RC02795
KEGG koko:K03027,ko:K08059,ko:K13196,ko:K14163,ko:K18715
KEGG TC1.I.1
KEGG ReactionR00435,R00441,R00442,R00443,R03661,R05578
KEGG Pathwayko00230,ko00240,ko00860,ko00970,ko01100,ko01110,ko01120,ko03020,ko04612,ko04623,ko05169,map00230,map00240,map00860,map00970,map01100,map01110,map01120,map03020,map04612,map04623,map05169
KEGG ModuleM00121,M00181,M00182,M00359
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0015074,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070893,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons5
EggNOG free text desc.transcription by RNA polymerase I
EggNOG OGsCOG0202@1,KOG1521@2759
Ec32 ortholog descriptionDNA-directed RNA polymerase, insert domain
Ec32 orthologEc-14_004750.1
EC6.1.1.15,6.1.1.17
Cds size693
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03021,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462656.064985-CDS-Ecto-sp13_S_contig12324:188..2961681462656.064985-CDS-Ecto-sp13_S_contig12324:188..296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12324 189..296 -
1681462656.086734-CDS-Ecto-sp13_S_contig12324:816..9511681462656.086734-CDS-Ecto-sp13_S_contig12324:816..951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12324 817..951 -
1681462656.09642-CDS-Ecto-sp13_S_contig12324:1473..16651681462656.09642-CDS-Ecto-sp13_S_contig12324:1473..1665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12324 1474..1665 -
1681462656.105417-CDS-Ecto-sp13_S_contig12324:2101..22281681462656.105417-CDS-Ecto-sp13_S_contig12324:2101..2228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12324 2102..2228 -
1681462656.1177576-CDS-Ecto-sp13_S_contig12324:2908..30391681462656.1177576-CDS-Ecto-sp13_S_contig12324:2908..3039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12324 2909..3039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12324.1945.1prot_Ecto-sp13_S_contig12324.1945.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12324 189..3039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12324.1945.1

>prot_Ecto-sp13_S_contig12324.1945.1 ID=prot_Ecto-sp13_S_contig12324.1945.1|Name=mRNA_Ecto-sp13_S_contig12324.1945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
PTEFNTCVFKLEVKNPADAADMPDSMPTGTSYAAGPRRTMNVFSGAMEWC
PHGDQVERFKGEGGLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKF
SPVATASYRLLPVVTLKEEVEGQEAEELVAKCPLNVFDIEDLGGAGKRAK
VARPRDCTMCRECIREPGWSDKVSLSRVADHFIFGIESVGMLPPKELLKD
SVQVLRQKCDSMIAEVEAFESGVDFDEAMP*
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mRNA from alignment at Ecto-sp13_S_contig12324:189..3039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12324.1945.1 ID=mRNA_Ecto-sp13_S_contig12324.1945.1|Name=mRNA_Ecto-sp13_S_contig12324.1945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2851bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12324:189..3039- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGACGGAGTTCAACACGTGCGTGTTCAAGCTGGAGGTAAAAAACCCGGC
GGACGCGGCGGACATGCCGGACTCTATGCCGACGGGTACCAGCTATGCGG
CGGGGCCGCGACGCACCATGAACGTCTTCAGGTGTGCGAACCCCGCCGTC
GGCATCCAGTCAGTCGTGAACGTCAATGCGCTGACTTTGGTGTCTGGAAA
TCGATTATCTGCGGCTTTGGCGTTGGAGGTCATGGTGGTCGGTCCCATAC
TGTCGGCACGGCATATATGTTGGGTTCGGAACGCAGCGACAACACTTCAA
CTCCTCTGAGTTGCTCTTTTGTTACGTGGAAATCATGGGGGACGGGTGGG
AATACTCAAGGGACTACCAATGTCGGAAGGGTGCATCTGGGCTGAGAACT
CCGGCAGATCAACAGAGCTTGCCTCTGCTGCTGGGGATCAAACACATGGG
CTCAGTTTAAGTCGTGCATTTCTGTGTTTTTAGCTCTTGGATGCAAGCGC
GCGATCCGGGATGAGTTCGTTGCGCAAGGGATGTCAGATTCTACGTGCTG
CACGCAGAAGCACAGTTTTTCCGGTTATTTTTGGATAGTCTTCTTTCCCA
CAAGATTCCCTCACGAGCGGTAGCCCACACTCGCAAAGGAGATGAGCGTA
GGTTGATGCCTCCAGTCATTGCGGATTCGGGCGTGCCTGCTTTGCTACCC
GCCGTAGAACGTGTCGGTACCGAGAAGTAATCGCCTCTCCCATCACTTGC
CCCCATGCTGATGCTGCATCCCACCGGTCAATCGCTCTCGTCGGGCGCGT
CTCTTGCTTAGCGGTGCCATGGAGTGGTGCCCGCACGGAGATCAGGTGGA
GCGTTTCAAGGGGGAAGGGGGACTGCGGCCGGTGCACGATGACATCCTCA
TCGCCAAGCTCCGACCAGGACAGGAAATCGTCGCTGAGGTGTGTTCACGC
TGGAAAACAAGTGAACGTGCCATTTGTGCGGTCGAAGATGGTTGTGGGCA
CAGCAGTAGGTACAGCAGAGTGGAACACGGGTCCCTTGGAACCCCGCTGT
AAGATGCGTGCGCTATGGATCTTGGACCCCCCCGCGCTTCGAAGCCGGAT
TCTCAGACTCTGCGGCCTGAAAGAAAAGAAGGGTCGTACGCACGCTCAAC
AGGTGGCCGCCGTACGCGCTGTGTGTGTCGGTGTCCGTGACGCCACCTTT
GCGCGAGAATCCCCTCCGTACACTTCTGGGTTTCTCATCCTCGGTACCTG
TGGCGCCGCATGCCATTTCCACGAAGACGGCCGCCCGGTCCGCCGCGTCC
GTGTGTGTGTGTGCAGTGCCGAGCTTTGCCCGATTCCCTTCTTGATGTGC
GACTCTCCTTCCCCTGCTCTGTAGATGCACTGCCGAAAGGGCATCGGCAA
GGACCACGCCAAGTTTTCTCCTGTTGCCACGGCGAGCTACCGATTGCTAC
CGGTGGTCACTCTGAAGGAGGAGGTAGAGGGGCAAGAGGCGGAGGAGCTG
GTGGCGAAGTGTCCGCTGAACGTCTTCGACATCGAAGACCTGGGCGGTGC
TGGGAAGCGGGCGAAGGTGCGCAAGGAGTTCTGACACAAACGTTGACCGT
GCATTCCAACGTTAAAGGTTTTATTCGTCTTTATCGCGAAGGGTAGATCT
AGATGTATCCTGGACCACCATTTTGAGGGCAGGCTCGTGGAATTCGATTG
CCATTGAACATTTGTTGTTTCATGACTCTTTTGGGTGTCTGGTGATGGCT
AGTCATTCCAGCACACAGTTCCCAGTCTGTTCGATTCGTGCGAGGCAAAA
GGAGTCATTGACACTGAGTGCCGTGCAGTGAGCGAGGGCGGTCCCGGCCT
TGTATAGCTGCAACGGCGTGGGCATCTCGGTGGCACGTTCGTGTATCGTA
CAATCCCAAGCATGCAGCATCATACGATATACGCGTTACGTGACACGCCA
TTTATGTTCCGTGTAACCCTAACCCTGACCCTCACACGCGATACTGGCGC
CGCTTCCTCACGAAGAAGAGTGGCCAGTCCAACCTTATCCGACCAACAGC
ACTGCCACTGTTTTGCCTGCGCTCGGTTGAACATGAAGGTGGCCCGCCCA
AGAGATTGCACCATGTGCCGGGAGTGCATCCGGGAGCCTGGGTGGAGCGA
CAAGGTGTCCCTCTCACGCGTCGCAGACCACTTCATCTTCGGGATTGAGT
CCGTCGGGATGCTCCCGCCAAAGGTGCGTGTACGCCGTGCGCCCGTTTCA
TTCGTGCGCACCGGTGTGATGAAGGTGGTGAGATGAGGGTAACCATGGAA
ACTGCCAGCGTTCTCATGTCGGTGGCCAACGGGTTCCCAGTAGCTGGCTC
TTTTGGTCCACACTCAGGCACACGGCGCCATCGCCAACAAGCAAGAACTG
CAACAACGTTTCAACGAAGAAGAGCGAAAGCACCAAGTAGGGATGCCCGG
TGCACGACACTCTACTCATCGCCCTTCGTGTAAAGTCTTCTCGCCGCTGC
TGAAGTTCCACGCGTGAAGAAATTATAACCCGAGCCTTGAGGGCGAAATT
GCTTCTTTTATTGTTTCATGAGTTTTGTTCTGGTGGGGCTGCCATGCTTC
GCTTATGCAAGGTGAAATCAACCCCTATCCCATTCCTTCGGGATTTTTCG
GAGAATTCCCACGCACGATGTGCCATGCAATGGAATAAACCGTCTCCTTA
CACCTTCCCTACCGTCATTCAATCCCCCTTCGGCGTGGTTCAGGAGCTTC
TCAAGGATAGCGTTCAGGTCTTGCGCCAGAAGTGCGACTCCATGATTGCC
GAGGTGGAGGCATTCGAGTCAGGGGTTGATTTCGACGAGGCAATGCCATG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12324:189..3039-

>mRNA_Ecto-sp13_S_contig12324.1945.1 ID=mRNA_Ecto-sp13_S_contig12324.1945.1|Name=mRNA_Ecto-sp13_S_contig12324.1945.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12324:189..3039- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGACGGAGTTCAACACGTGCGTGTTCAAGCTGGAGGTAAAAAACCCGGC
GGACGCGGCGGACATGCCGGACTCTATGCCGACGGGTACCAGCTATGCGG
CGGGGCCGCGACGCACCATGAACGTCTTCAGCGGTGCCATGGAGTGGTGC
CCGCACGGAGATCAGGTGGAGCGTTTCAAGGGGGAAGGGGGACTGCGGCC
GGTGCACGATGACATCCTCATCGCCAAGCTCCGACCAGGACAGGAAATCG
TCGCTGAGATGCACTGCCGAAAGGGCATCGGCAAGGACCACGCCAAGTTT
TCTCCTGTTGCCACGGCGAGCTACCGATTGCTACCGGTGGTCACTCTGAA
GGAGGAGGTAGAGGGGCAAGAGGCGGAGGAGCTGGTGGCGAAGTGTCCGC
TGAACGTCTTCGACATCGAAGACCTGGGCGGTGCTGGGAAGCGGGCGAAG
GTGGCCCGCCCAAGAGATTGCACCATGTGCCGGGAGTGCATCCGGGAGCC
TGGGTGGAGCGACAAGGTGTCCCTCTCACGCGTCGCAGACCACTTCATCT
TCGGGATTGAGTCCGTCGGGATGCTCCCGCCAAAGGAGCTTCTCAAGGAT
AGCGTTCAGGTCTTGCGCCAGAAGTGCGACTCCATGATTGCCGAGGTGGA
GGCATTCGAGTCAGGGGTTGATTTCGACGAGGCAATGCCATGA
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