mRNA_Ecto-sp13_S_contig8105.19450.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8105.19450.1
Unique NamemRNA_Ecto-sp13_S_contig8105.19450.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8105.19450.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 1.760e-56
Identity = 106/117 (90.60%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:    1 EIGPDCFWLQNPTIFAPFSYLCDNFTMRLQMSPEAMVGRSLLSIVDERDALSLRNAVCQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLVVVTRLYSSGS 351
            E GPD F L N TI APFSYLCDNFTMRLQM PEAMVGRSLLSIVDER+ALSLRNA+ QVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGL+VVTRLYSSGS
Sbjct:   62 EHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYSSGS 178
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BLAST of mRNA_Ecto-sp13_S_contig8105.19450.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 3.130e-6
Identity = 46/140 (32.86%), Postives = 63/140 (45.00%), Query Frame = 1 
Query:    1 EIGPDCFWLQNPTIFAPFSYLCDNFTMRLQMSPEAMVGRSLLSIVDERDALSLRNAVCQVLNE----------------------------AQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLVVVTRL 336
            E GPD F L   T+ APFS++  +  ++ Q+  E ++G+ L ++VD  D   L  A+  VL                                 XXXXXXX       VV + +  G   C ASMSIA G  GL+VVTR+
Sbjct:   21 ENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNSRDGGXXXXXXXXXXXXXXXXXXXXXXXVAVGSGTVVELNVMCGGASCLASMSIALGCRGLIVVTRM 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8105.19450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRF4_9PHAE1.760e-5690.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCA0_ECTSI3.130e-632.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8105contigEcto-sp13_S_contig8105:5307..7072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size354
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_002600.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.543802-CDS-Ecto-sp13_S_contig8105:5306..55321681464083.543802-CDS-Ecto-sp13_S_contig8105:5306..5532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8105 5307..5532 -
1681464083.5572848-CDS-Ecto-sp13_S_contig8105:6678..67501681464083.5572848-CDS-Ecto-sp13_S_contig8105:6678..6750Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8105 6679..6750 -
1681464083.5667608-CDS-Ecto-sp13_S_contig8105:7016..70721681464083.5667608-CDS-Ecto-sp13_S_contig8105:7016..7072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8105 7017..7072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8105.19450.1prot_Ecto-sp13_S_contig8105.19450.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8105 5307..7072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8105.19450.1

>prot_Ecto-sp13_S_contig8105.19450.1 ID=prot_Ecto-sp13_S_contig8105.19450.1|Name=mRNA_Ecto-sp13_S_contig8105.19450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
EIGPDCFWLQNPTIFAPFSYLCDNFTMRLQMSPEAMVGRSLLSIVDERDA
LSLRNAVCQVLNEAQHHHHAGGGSDPPGGAVVHVRIAHGQIFCEASMSIA
CGSHGLVVVTRLYSSGS*
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mRNA from alignment at Ecto-sp13_S_contig8105:5307..7072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8105.19450.1 ID=mRNA_Ecto-sp13_S_contig8105.19450.1|Name=mRNA_Ecto-sp13_S_contig8105.19450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1766bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8105:5307..7072- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGATCGGCCCGGATTGTTTTTGGCTGCAAAACCCTACGATCTTTGCTCC
GTTCAGGTACGGCGCGAGGTAAAAGCGAGGGGGGGGGGGGGGTAGAAAGA
GAAAGAGAAGGTAACGGTGGAGATGGACTGTGAAGTAGAAACGGCGAAGT
TTGTTCCATCGTTCTCTGGGATAACGCTGCTCTTTCGTCCCCAGCACTTA
CAAAGTGCACTAGGAAGAGCAGCTCCTCAACCGTCGCGCCGTCCCTCCGT
CCCTCCCTCCGTCCCTCCCTCTCCGGATATGGAATCAACACCGCTACTGA
CAACGACGGTACGACCGTACAGCTACCTCTGCGATAACTTCACCATGCGG
CTGCAGATGTCGCCGGAGGCAATGGTCGGCAGGTCCCTGTTGAGGTGCGG
ACAAAGGGCAAGTAGGATACGTACTCTTGAGGAGGGGTGCGGGCAGGCTA
GTTTAGCATGATTGTCTTCTCCTCTCTAACTGCCGCTACGGTAGGTCGCG
TAAGATACCGCACCCCCTGGACCGATTTTCAAAGCTCGATTGCTCCATGA
CTAAGAGGATGCCGAAATCAAATGATATGTTTTCGGAGCCCGTCGACGAG
ACCATTTCGACGGCTCCGTTTTCGGCACCAACGCTGCTGTTCCTGCCGAG
TAATCGAGCTTGAAAAGCGGTCCAGGGTGTGTGATATCGTTTGTCACCTA
CGGTACTACTCCGTGCGATGGCGGAGCTAGTGTGCACTACACAGCAGTAT
CCGTTAGCGGGCATCATCCCGATGCAACGGCGCCCCGCCCAAAAGATTCA
TGCATAGAAAGAGCAGAGCTTGGTAGAAACGACCGACCGTTCCGACCCTC
GCCGTGAACAGCGTGTACACACCAACCTGCTCAAAGCGACCGCGTGAGGA
CAACCTGGCTGGTGAAAAGCTTGTCTTTTTGACGTGACTTGTCGCTCCCC
CAAGCTGTTTTGGCTGCGCTGGATTCAGCCTCTGCCGTTAACAGCGTCCC
GTGACTCCTCTTTTGAGATAAACCGAGTTTACTTAGTCACTACACTGCGC
CGGGTTCTCTGTTCCGAGCAGTGCGCTTGTGTTCGACGCGCTTATGTATG
TGCATCAACGCATGCCTCTATTGCGGTGGACGTTTTTGATGTGCTGGTTA
CAATTGATGACGTAGCAGTGTGTTGATGCTGCTGTGAAAACGAATTCGGT
TCTTCTCCCTGCCTCTTTCTCACCGTCCTCCCCCCCCGTCACTGGGCATG
TCGTGAGCTTCGTCGTGCATCGTCGCCTCCCCCCCCCCCCCCCCCCGCCA
TTCATCTCTCTCTCGCGCGCGCTCTCTTTCCATCTCTGCCATTCAATCTC
CTCCACGTCATGTATGGTGCTCTCTCTGCCAAAGCAACTTTTTTTCTGCC
CCTTGAGTCTCTCCTTACACCTCTCCTATTCAATGTTCTCCGTTTTTTAC
TCTCTCTTTCGCCTGCTGCCGTCTGTCTGCAAACTCTTCCCTCCTTGGTC
CGGCCAACTGCGTTGCCGAACCTCCCCTTTCTCCCTTCAGCATCGTGGAC
GAGAGAGACGCGCTCTCTCTCCGAAACGCTGTTTGCCAGGTGCTCAACGA
GGCCCAACACCACCATCACGCGGGAGGCGGAAGCGACCCCCCCGGGGGTG
CTGTCGTCCATGTCCGCATCGCGCACGGACAGATATTTTGCGAGGCGAGC
ATGTCGATCGCGTGCGGCTCGCACGGCCTGGTAGTCGTCACTCGCTTGTA
CAGCAGCGGCTCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8105:5307..7072-

>mRNA_Ecto-sp13_S_contig8105.19450.1 ID=mRNA_Ecto-sp13_S_contig8105.19450.1|Name=mRNA_Ecto-sp13_S_contig8105.19450.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8105:5307..7072- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGATCGGCCCGGATTGTTTTTGGCTGCAAAACCCTACGATCTTTGCTCC
GTTCAGCTACCTCTGCGATAACTTCACCATGCGGCTGCAGATGTCGCCGG
AGGCAATGGTCGGCAGGTCCCTGTTGAGCATCGTGGACGAGAGAGACGCG
CTCTCTCTCCGAAACGCTGTTTGCCAGGTGCTCAACGAGGCCCAACACCA
CCATCACGCGGGAGGCGGAAGCGACCCCCCCGGGGGTGCTGTCGTCCATG
TCCGCATCGCGCACGGACAGATATTTTGCGAGGCGAGCATGTCGATCGCG
TGCGGCTCGCACGGCCTGGTAGTCGTCACTCGCTTGTACAGCAGCGGCTC
CTGA
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