mRNA_Ecto-sp13_S_contig8105.19449.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8105.19449.1
Unique NamemRNA_Ecto-sp13_S_contig8105.19449.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8105.19449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8105contigEcto-sp13_S_contig8105:4256..5045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size790
Hectar predicted targeting categorysignal peptide
Exons1
Cds size639
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.4913602-UTR-Ecto-sp13_S_contig8105:4255..43851681464083.4913602-UTR-Ecto-sp13_S_contig8105:4255..4385Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8105 4256..4385 +
1681464083.5174828-UTR-Ecto-sp13_S_contig8105:5024..50451681464083.5174828-UTR-Ecto-sp13_S_contig8105:5024..5045Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8105 5025..5045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.5074506-CDS-Ecto-sp13_S_contig8105:4385..50241681464083.5074506-CDS-Ecto-sp13_S_contig8105:4385..5024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8105 4386..5024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8105.19449.1prot_Ecto-sp13_S_contig8105.19449.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8105 4386..5024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8105.19449.1

>prot_Ecto-sp13_S_contig8105.19449.1 ID=prot_Ecto-sp13_S_contig8105.19449.1|Name=mRNA_Ecto-sp13_S_contig8105.19449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MTLALLALAWNILQTENLTPTDGESGKEDGTCLTKTWPPVPITSSSIFIQ
CIDSSPFYNTTAELGVQTMRRLRACREKLKRVRQFQQKTKTRKERTARPP
AHFCGAYGVPYLLNHATLTRSRTITSSSLCLVTNDHTVGERIHSSIVTTP
PSPPLAPRTNKAAENIGGQYLLWFGQVRAKTVSIGIHRFPEHEPNTPLPY
ALHTRPRHIPRS*
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mRNA from alignment at Ecto-sp13_S_contig8105:4256..5045+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8105.19449.1 ID=mRNA_Ecto-sp13_S_contig8105.19449.1|Name=mRNA_Ecto-sp13_S_contig8105.19449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=790bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8105:4256..5045+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCAGGTACGGTACGGCTTTACACACCATATTCAACGGAAACAGACAACGG
AACGGCGATCAACGCCAAAGGAACAGTCTCGCACGCGCGCAAAACACGGA
TCAAATGCGGGTAGGAATTTGTCTGGTCTCATGACCCTCGCGCTTCTAGC
TCTGGCCTGGAACATTTTGCAAACTGAAAACTTAACACCAACGGACGGAG
AGTCCGGCAAGGAAGATGGCACCTGTTTAACTAAAACGTGGCCCCCTGTC
CCCATTACTTCAAGTAGTATCTTCATCCAATGCATCGATTCTTCACCTTT
CTACAACACTACTGCTGAACTAGGTGTGCAGACAATGAGGCGTTTGCGCG
CCTGCCGTGAAAAGCTCAAACGCGTCAGACAATTTCAACAAAAGACTAAA
ACAAGGAAAGAACGCACAGCCAGACCCCCAGCACATTTTTGCGGGGCCTA
CGGCGTTCCATACTTACTCAACCATGCTACCTTGACGAGAAGTCGAACAA
TTACCAGCAGCAGCCTTTGTCTTGTGACAAACGACCATACCGTAGGCGAG
CGTATCCATTCTTCTATCGTCACGACGCCTCCCTCTCCCCCGCTCGCACC
AAGAACAAATAAGGCTGCAGAAAACATCGGTGGGCAATACCTTCTTTGGT
TTGGTCAGGTCAGGGCCAAAACCGTCTCCATAGGCATCCATCGTTTTCCG
GAACACGAACCGAATACACCCCTCCCGTATGCCCTCCACACCCGCCCTAG
ACACATACCGCGGTCCTGATGGTGAGCAGCCGCCCGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8105:4256..5045+

>mRNA_Ecto-sp13_S_contig8105.19449.1 ID=mRNA_Ecto-sp13_S_contig8105.19449.1|Name=mRNA_Ecto-sp13_S_contig8105.19449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8105:4256..5045+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCTCGCGCTTCTAGCTCTGGCCTGGAACATTTTGCAAACTGAAAA
CTTAACACCAACGGACGGAGAGTCCGGCAAGGAAGATGGCACCTGTTTAA
CTAAAACGTGGCCCCCTGTCCCCATTACTTCAAGTAGTATCTTCATCCAA
TGCATCGATTCTTCACCTTTCTACAACACTACTGCTGAACTAGGTGTGCA
GACAATGAGGCGTTTGCGCGCCTGCCGTGAAAAGCTCAAACGCGTCAGAC
AATTTCAACAAAAGACTAAAACAAGGAAAGAACGCACAGCCAGACCCCCA
GCACATTTTTGCGGGGCCTACGGCGTTCCATACTTACTCAACCATGCTAC
CTTGACGAGAAGTCGAACAATTACCAGCAGCAGCCTTTGTCTTGTGACAA
ACGACCATACCGTAGGCGAGCGTATCCATTCTTCTATCGTCACGACGCCT
CCCTCTCCCCCGCTCGCACCAAGAACAAATAAGGCTGCAGAAAACATCGG
TGGGCAATACCTTCTTTGGTTTGGTCAGGTCAGGGCCAAAACCGTCTCCA
TAGGCATCCATCGTTTTCCGGAACACGAACCGAATACACCCCTCCCGTAT
GCCCTCCACACCCGCCCTAGACACATACCGCGGTCCTGA
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