mRNA_Ecto-sp13_S_contig8100.19446.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8100.19446.1
Unique NamemRNA_Ecto-sp13_S_contig8100.19446.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8100.19446.1 vs. uniprot
Match: D7G491_ECTSI (Similar to Dynein heavy chain 3, axonemal (Axonemal beta dynein heavy chain 3) (Ciliary dynein heavy chain 3), partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G491_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 3.590e-67
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 1 
Query:    1 LLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVEAIECLRTMRAEEQIKLRQEQIWMGQLLDFVFEHGGLHHDVIIAVTGVHRVMGELSTATDKAEKAIAEGKAQL 366
            LLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVEAIECLRTMRAEEQIKLRQEQIWMGQLLDFVFEHGGLHHDVIIAVTGVHRVM ELSTATDKAEKAIAEGKAQL
Sbjct: 1376 LLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVEAIECLRTMRAEEQIKLRQEQIWMGQLLDFVFEHGGLHHDVIIAVTGVHRVMSELSTATDKAEKAIAEGKAQL 1497
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BLAST of mRNA_Ecto-sp13_S_contig8100.19446.1 vs. uniprot
Match: A0A6H5L524_9PHAE (DHC_N2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L524_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 2.500e-43
Identity = 96/123 (78.05%), Postives = 96/123 (78.05%), Query Frame = 1 
Query:    1 LLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVEAIECLRTMRAEEQIKLRQEQIWMGQLLDFVFEHGGLHHDVIIAVTGVHRVMGELSTATDKAEKAIAEGKAQLQ 369
            LLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVEAIECLRTMR EEQ                          VIIAVTGVHRVMGELSTATDKAEKAIAEGKAQLQ
Sbjct: 1589 LLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVEAIECLRTMRTEEQ--------------------------VIIAVTGVHRVMGELSTATDKAEKAIAEGKAQLQ 1685
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8100.19446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G491_ECTSI3.590e-6799.18Similar to Dynein heavy chain 3, axonemal (Axonema... [more]
A0A6H5L524_9PHAE2.500e-4378.05DHC_N2 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8100contigEcto-sp13_S_contig8100:5368..7076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score232.6
Seed ortholog evalue9.6e-59
Seed eggNOG ortholog2880.D7G491
Preferred nameDNAH12
Model size370
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size369
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464083.2936049-CDS-Ecto-sp13_S_contig8100:5367..54401681464083.2936049-CDS-Ecto-sp13_S_contig8100:5367..5440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8100 5368..5440 +
1681464083.305683-CDS-Ecto-sp13_S_contig8100:5811..59271681464083.305683-CDS-Ecto-sp13_S_contig8100:5811..5927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8100 5812..5927 +
1681464083.3173578-CDS-Ecto-sp13_S_contig8100:6441..65191681464083.3173578-CDS-Ecto-sp13_S_contig8100:6441..6519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8100 6442..6519 +
1681464083.3283887-CDS-Ecto-sp13_S_contig8100:6974..70761681464083.3283887-CDS-Ecto-sp13_S_contig8100:6974..7076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8100 6975..7076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8100.19446.1prot_Ecto-sp13_S_contig8100.19446.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8100 5368..7076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8100.19446.1

>prot_Ecto-sp13_S_contig8100.19446.1 ID=prot_Ecto-sp13_S_contig8100.19446.1|Name=mRNA_Ecto-sp13_S_contig8100.19446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
LLQVAGDLCKGVLQRVTSTLNKLTSGVTKQARSAILRLGKRPRSTEEMVE
AIECLRTMRAEEQIKLRQEQIWMGQLLDFVFEHGGLHHDVIIAVTGVHRV
MGELSTATDKAEKAIAEGKAQLQ
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mRNA from alignment at Ecto-sp13_S_contig8100:5368..7076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8100.19446.1 ID=mRNA_Ecto-sp13_S_contig8100.19446.1|Name=mRNA_Ecto-sp13_S_contig8100.19446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1709bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8100:5368..7076+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTTCAGGTCGCTGGTGATCTTTGCAAGGGCGTGCTTCAGCGTGTGAC
TTCCACACTGAACAAGCTAACGAGTAAGTGGCACTGCATGTGACGGAACT
GTGGAATGTGACTGTTTATTGGGAGGCTTGAGTGAGTGCAAGGGCGACGT
TGTGCGTGCATTTAACTTCGGTGGTGCCCCTCTTTTTTCATTGAAATTGC
GGGGGCGTAGAGAGTGATTGAAGCAGAATATATCGGTTATCGTCCGGCTG
ACAAACAGAAACAAGAAGTTGATTTGGACCGAATATCATGCGTGTCGAGC
GCAGACGAAAAGAACAACTCGAGGTGCAACCACAGCGAGAAGATGTTATC
AGCAAGTTAGAACACAGACCCTTGTTTATGGTGGCATGAAGAAGAAGTTC
ATCAGCAGTCGAATCTTCAAGTTCGTTTCTGTTTGATGGGGCAGGTGGTG
TGACGAAGCAGGCTCGATCGGCCATTCTCAGACTCGGCAAAAGGCCCAGG
TCCACGGAGGAAATGGTGGAGGCCATTGAGTGCCTGCGAACGATGCGAGC
GGAAGAACAGGTTTGTCTACTAGCGTTGATAGCTGGACATAAACTACGTC
GGTAGAACACACCCGTGTCCCACATGCTCAACACCGAAACCGAAACGAGT
GATGGCGACAAATTTGAAACACGTATTGCTGGCCTGGGAGCAGGAAGAGG
GAACGAACCGGGTGCCCTTCAGGCAGCCACAACGTTATAACCACTATGGA
TTTCCAAACGCACGGGAAAAATGAGGGGTCATTCCCGCACAGGAACGGAG
GGGGTCGATCGACAATATCGGAAAATATCGGTAGAAACTGTTTCTGGTCT
TCCCCGCGATATACGTGGTCGCTTGGGGCATGGCATCGCCTGGTAAAGTT
CAAGGCAAGTCACTCCCGTCGAGTACGTAGGACTTTGCCGGAATCTCTAA
ACAGTAGACCACAGAACGAGAGGTATTGTCTTGTCTCCAACGATGTCGCG
GTCAATGAATATATGGGAATGTCGAGCAAACGTATCAGTACGCCCGCCCA
TCGCCCCAACCTCGCCTCTTGTAGATCAAGCTTAGGCAGGAGCAGATATG
GATGGGACAGCTGCTGGACTTCGTGTTTGAGCATGGCGGGTTGCATCATG
ACGTGAGACTGTCACCCGTGATGGTGTTTTTGGAGCTTTCGTCGCCTCGT
TTACTTCGGTCGCTCGCAATTCTACCTATTTAGACTGCAGTGCTGTTCTG
TCTGTCTGAAGGGCACCGACCGTGTTTTGTTTCAAATCCCTTGCGGTACA
CTTGACGTCGTGTGCTTACTTGACCACAGCCCTGTGCCATATTTGGTAAG
TGCTCAGAGTTCGTCCCACTTTCGTGTACAACTGTATGCTGCTGCAACCA
CGGCATACAGCACACCAACATCTACAAACTGACCCTGCTTCTAAAAAAAT
AGAAGCCCAAGGAAGCCTCCACCTTCACTACATGCAATCCTTCTTCACAC
CAACTCGCAAATTGTTGCCGACATTCTTCCTTTTATGTCTCGGGTCATTC
GGAGCTACGCACGATGAAGCAACCAATCTTGACTAAACTCAATGCGTGAC
TTCCAAGGTGATCATCGCGGTTACCGGGGTTCACCGAGTCATGGGCGAAC
TGTCCACAGCCACGGACAAGGCAGAGAAAGCCATTGCAGAGGGGAAAGCG
CAGCTGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8100:5368..7076+

>mRNA_Ecto-sp13_S_contig8100.19446.1 ID=mRNA_Ecto-sp13_S_contig8100.19446.1|Name=mRNA_Ecto-sp13_S_contig8100.19446.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8100:5368..7076+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTTCAGGTCGCTGGTGATCTTTGCAAGGGCGTGCTTCAGCGTGTGAC
TTCCACACTGAACAAGCTAACGAGTGGTGTGACGAAGCAGGCTCGATCGG
CCATTCTCAGACTCGGCAAAAGGCCCAGGTCCACGGAGGAAATGGTGGAG
GCCATTGAGTGCCTGCGAACGATGCGAGCGGAAGAACAGATCAAGCTTAG
GCAGGAGCAGATATGGATGGGACAGCTGCTGGACTTCGTGTTTGAGCATG
GCGGGTTGCATCATGACGTGATCATCGCGGTTACCGGGGTTCACCGAGTC
ATGGGCGAACTGTCCACAGCCACGGACAAGGCAGAGAAAGCCATTGCAGA
GGGGAAAGCGCAGCTGCAG
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