mRNA_Ecto-sp13_S_contig80976.19441.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80976.19441.1
Unique NamemRNA_Ecto-sp13_S_contig80976.19441.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80976.19441.1 vs. uniprot
Match: D8LS27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS27_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.700e-18
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 GSGGNTPLHLAALEGMDELVSSLLLRGADKDALSVLGKTPLMLASR 138
            GSGGNTPLHLAALEGMDEL SSLLLR AD+DALSVLGKTPLM ASR
Sbjct:   19 GSGGNTPLHLAALEGMDELASSLLLREADEDALSVLGKTPLMRASR 64
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BLAST of mRNA_Ecto-sp13_S_contig80976.19441.1 vs. uniprot
Match: A0A6H5K663_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K663_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.380e-13
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 GSGGNTPLHLAALEGMDELVSSLLLRGADKDALSVLGK 114
            GSGGNTP HLAALEGMDELVSSLLLRGADKDALSVLGK
Sbjct:  114 GSGGNTPRHLAALEGMDELVSSLLLRGADKDALSVLGK 151
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BLAST of mRNA_Ecto-sp13_S_contig80976.19441.1 vs. uniprot
Match: A0A6H5KKF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF4_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 2.810e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   16 TPLHLAALEGMDELVSSLLLRGADKDALSVLGKTPLMLAS 135
            TPLHLA +EG+D +VS L+ RG DKDA+   G++ L++AS
Sbjct:  153 TPLHLATMEGLDGIVSPLVFRGVDKDAVDKYGRSALIIAS 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80976.19441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LS27_ECTSI4.700e-1891.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K663_9PHAE1.380e-1397.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKF4_9PHAE2.810e-555.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80976contigEcto-sp13_S_contig80976:472..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464082.7127461-CDS-Ecto-sp13_S_contig80976:471..6091681464082.7127461-CDS-Ecto-sp13_S_contig80976:471..609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80976 472..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80976.19441.1prot_Ecto-sp13_S_contig80976.19441.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80976 472..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80976.19441.1

>prot_Ecto-sp13_S_contig80976.19441.1 ID=prot_Ecto-sp13_S_contig80976.19441.1|Name=mRNA_Ecto-sp13_S_contig80976.19441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
GSGGNTPLHLAALEGMDELVSSLLLRGADKDALSVLGKTPLMLASR
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mRNA from alignment at Ecto-sp13_S_contig80976:472..609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80976.19441.1 ID=mRNA_Ecto-sp13_S_contig80976.19441.1|Name=mRNA_Ecto-sp13_S_contig80976.19441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80976:472..609+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCCGGGGGAAATACACCCCTCCACCTGGCTGCTCTCGAAGGGATGGA
CGAGTTAGTGTCTAGCCTCTTGCTCAGGGGGGCGGACAAAGATGCTCTCA
GCGTCCTAGGCAAGACACCGCTGATGCTTGCGTCCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80976:472..609+

>mRNA_Ecto-sp13_S_contig80976.19441.1 ID=mRNA_Ecto-sp13_S_contig80976.19441.1|Name=mRNA_Ecto-sp13_S_contig80976.19441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80976:472..609+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCCGGGGGAAATACACCCCTCCACCTGGCTGCTCTCGAAGGGATGGA
CGAGTTAGTGTCTAGCCTCTTGCTCAGGGGGGCGGACAAAGATGCTCTCA
GCGTCCTAGGCAAGACACCGCTGATGCTTGCGTCCAGG
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