mRNA_Ecto-sp13_S_contig80964.19440.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80964.19440.1
Unique NamemRNA_Ecto-sp13_S_contig80964.19440.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80964.19440.1 vs. uniprot
Match: A0A6H5KIT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIT0_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 7.310e-39
Identity = 79/111 (71.17%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    1 MGSQGTNKRRRQRQLLKSRRLVETSKKIFVPDLCSWRDV*STRRFRIAGRETVGPCR*YFSPYTERGRMDAHTAQRVLSTQIKELADFILLCRELIVEYQAATGEGGEPSS 333
            MGSQGTNKRRRQRQLLKSR LVETSKK+F P LCSWRDV   +     G+   GP    F   + RG MDAHTAQ VLSTQ KELADFILLCRELI+EYQ ATGEGG PSS
Sbjct:    1 MGSQGTNKRRRQRQLLKSRSLVETSKKMFDPGLCSWRDV--YKAIPNRGQGDCGPLSVVFLA-SHRGEMDAHTAQCVLSTQSKELADFILLCRELIIEYQPATGEGG-PSS 107
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80964.19440.1 vs. uniprot
Match: D8LC45_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC45_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.980e-20
Identity = 52/80 (65.00%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:   82 IFVPDLCSWRDV*STRRFRIAGRETVGPCR*YFSPYTERGRMDAHTAQRVLSTQIKELADFILLCRELIVEYQAATGEGG 321
            +F P LCSWRDV   +     G+   GP    F     RG MDAHTAQ VLSTQ KELADFILLCRELIVEYQAATGEGG
Sbjct:    1 MFDPGLCSWRDV--YKAIPNRGQGDCGPLSVIFLAL-HRGGMDAHTAQCVLSTQRKELADFILLCRELIVEYQAATGEGG 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80964.19440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KIT0_9PHAE7.310e-3971.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC45_ECTSI1.980e-2065.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80964contigEcto-sp13_S_contig80964:204..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size386
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size132
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464082.6498387-UTR-Ecto-sp13_S_contig80964:203..2531681464082.6498387-UTR-Ecto-sp13_S_contig80964:203..253Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig80964 204..253 -
1681464082.6733315-UTR-Ecto-sp13_S_contig80964:385..5891681464082.6733315-UTR-Ecto-sp13_S_contig80964:385..589Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig80964 386..589 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464082.6623664-CDS-Ecto-sp13_S_contig80964:253..3851681464082.6623664-CDS-Ecto-sp13_S_contig80964:253..385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80964 254..385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80964.19440.1prot_Ecto-sp13_S_contig80964.19440.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80964 254..385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80964.19440.1

>prot_Ecto-sp13_S_contig80964.19440.1 ID=prot_Ecto-sp13_S_contig80964.19440.1|Name=mRNA_Ecto-sp13_S_contig80964.19440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MDAHTAQRVLSTQIKELADFILLCRELIVEYQAATGEGGEPSS*
back to top

mRNA from alignment at Ecto-sp13_S_contig80964:204..589-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80964.19440.1 ID=mRNA_Ecto-sp13_S_contig80964.19440.1|Name=mRNA_Ecto-sp13_S_contig80964.19440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=386bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80964:204..589- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAGCCAAGGGACGAACAAACGTAGGCGTCAAAGGCAACTGCTGAA
ATCCCGGAGACTGGTGGAGACCTCGAAGAAGATCTTCGTTCCTGACCTTT
GCTCGTGGAGAGACGTGTAGTCTACAAGGCGATTCCGAATCGCGGGCAGG
GAGACTGTGGGCCCTTGTCGGTGATACTTTTCGCCTTACACAGAGAGAGG
TAGAATGGATGCCCACACAGCGCAACGTGTGTTGTCGACACAAATTAAGG
AATTGGCGGACTTTATCCTCCTTTGTCGGGAGCTCATCGTAGAGTACCAA
GCAGCTACAGGAGAGGGGGGGGAGCCTTCTTCGTAAGCCAAAGCGACTCG
GACAAACCGGATGCGGACATCAAGAGCATGGTTGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80964:204..589-

>mRNA_Ecto-sp13_S_contig80964.19440.1 ID=mRNA_Ecto-sp13_S_contig80964.19440.1|Name=mRNA_Ecto-sp13_S_contig80964.19440.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80964:204..589- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCCCACACAGCGCAACGTGTGTTGTCGACACAAATTAAGGAATT
GGCGGACTTTATCCTCCTTTGTCGGGAGCTCATCGTAGAGTACCAAGCAG
CTACAGGAGAGGGGGGGGAGCCTTCTTCGTAA
back to top