mRNA_Ecto-sp13_S_contig80877.19427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80877.19427.1
Unique NamemRNA_Ecto-sp13_S_contig80877.19427.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 8.420e-21
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
            REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAA VGILEG
Sbjct:  304 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEG 355          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.310e-20
Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
            REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLS GV AA VGILEG
Sbjct:  186 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEG 237          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A383WBC0_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WBC0_TETOB)

HSP 1 Score: 52.8 bits (125), Expect = 1.240e-6
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILE 153
            RE+LMD+ D EGDR+AGV TLPVL+G+ AAL+ A +   +G G A V +L+
Sbjct:  290 REILMDLNDAEGDRQAGVWTLPVLLGKPAALLCAASCALLGCGGALVRLLQ 340          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A0U5CWL1_9EURY (Digeranylgeranylglyceryl phosphate synthase n=6 Tax=Halobacteriaceae TaxID=2236 RepID=A0A0U5CWL1_9EURY)

HSP 1 Score: 52.0 bits (123), Expect = 2.110e-6
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
            REV+ D+ DV GDRE G+RTLP++MG + ALV  T LL V V A+ V  L G
Sbjct:  174 REVIKDVEDVAGDREEGLRTLPIVMGERRALVLGTVLLIVAVLASPVPYLAG 225          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: UPI001F27BF68 (geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Halobacterium sp. TGN-42-S1 TaxID=2902625 RepID=UPI001F27BF68)

HSP 1 Score: 50.8 bits (120), Expect = 5.490e-6
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
            REV+ D+ DV GDRE G+RTLPV +G + AL+   ALL+V V A+ V  L G
Sbjct:  175 REVVKDVEDVAGDREEGLRTLPVAVGERRALLLGAALLAVAVAASPVPYLAG 226          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A7J7PTZ1_9CHLO (UbiA prenyltransferase family n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PTZ1_9CHLO)

HSP 1 Score: 50.4 bits (119), Expect = 8.050e-6
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILE 153
            RE+LMD+ D EGDR+A V TLPVL+G+ AAL+ A  +L +G G A   +L+
Sbjct:  211 REILMDLNDAEGDRQARVMTLPVLLGKPAALLCACTVLLLGSGGALARLLQ 261          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: M0HSH6_HALEO (Digeranylgeranylglyceryl phosphate synthase n=3 Tax=Haloferax TaxID=2251 RepID=M0HSH6_HALEO)

HSP 1 Score: 50.1 bits (118), Expect = 1.040e-5
Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
            RE++ D+ D+ GD+E G+RTLP+++G + +LVF T +L V V A++V  L+G
Sbjct:  174 REIVKDVEDIAGDKEEGLRTLPIVVGERPSLVFGTGVLVVAVLASAVPYLDG 225          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A4S3TPE4_9EURY (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Salinadaptatus halalkaliphilus TaxID=2419781 RepID=A0A4S3TPE4_9EURY)

HSP 1 Score: 49.7 bits (117), Expect = 1.430e-5
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
            RE++ D+ D+EGDRE G+RTLP+ +G + AL  A  LL VGV A+ V  L G
Sbjct:  174 REIIKDVEDLEGDREEGLRTLPIAIGERRALQIALGLLVVGVFASPVPFLLG 225          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A0D2MBQ7_9CHLO (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MBQ7_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 5.190e-5
Identity = 20/35 (57.14%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFAT 105
            RE++MD+ D+EGDR AG++TLPV++G++ AL+ AT
Sbjct:  189 REIVMDLTDLEGDRAAGIKTLPVMIGQRGALLAAT 223          
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: UPI001F402B72 (geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Halobaculum sp. CBA1158 TaxID=2904243 RepID=UPI001F402B72)

HSP 1 Score: 47.8 bits (112), Expect = 6.970e-5
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
            REV+ D+ DV GDRE G+RTLP++ G + AL  ATA ++V   A+++  L G
Sbjct:  174 REVVKDVEDVAGDREEGLRTLPIVAGERPALALATAAMAVAALASALPYLRG 225          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5LBF2_9PHAE8.420e-2198.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD89_ECTSI8.310e-2094.23Prenyltransferase, UbiA family, Putative 4-hydroxy... [more]
A0A383WBC0_TETOB1.240e-654.90Uncharacterized protein n=2 Tax=Tetradesmus obliqu... [more]
A0A0U5CWL1_9EURY2.110e-655.77Digeranylgeranylglyceryl phosphate synthase n=6 Ta... [more]
UPI001F27BF685.490e-653.85geranylgeranylglycerol-phosphate geranylgeranyltra... [more]
A0A7J7PTZ1_9CHLO8.050e-652.94UbiA prenyltransferase family n=1 Tax=Scenedesmus ... [more]
M0HSH6_HALEO1.040e-546.15Digeranylgeranylglyceryl phosphate synthase n=3 Ta... [more]
A0A4S3TPE4_9EURY1.430e-551.92Digeranylgeranylglyceryl phosphate synthase n=1 Ta... [more]
A0A0D2MBQ7_9CHLO5.190e-557.14Digeranylgeranylglyceryl phosphate synthase n=1 Ta... [more]
UPI001F402B726.970e-548.08geranylgeranylglycerol-phosphate geranylgeranyltra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80877contigEcto-sp13_S_contig80877:225..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score80.1
Seed ortholog evalue3.1e-13
Seed eggNOG ortholog2880.D8LD89
Model size156
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG free text desc.UbiA prenyltransferase family
EggNOG OGs2CYY1@1,2S75T@2759
Cds size144
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.7019072-UTR-Ecto-sp13_S_contig80877:224..2361681464081.7019072-UTR-Ecto-sp13_S_contig80877:224..236Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig80877 225..236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464081.7157907-CDS-Ecto-sp13_S_contig80877:236..3801681464081.7157907-CDS-Ecto-sp13_S_contig80877:236..380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80877 237..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80877.19427.1prot_Ecto-sp13_S_contig80877.19427.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80877 237..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80877.19427.1

>prot_Ecto-sp13_S_contig80877.19427.1 ID=prot_Ecto-sp13_S_contig80877.19427.1|Name=mRNA_Ecto-sp13_S_contig80877.19427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG
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mRNA from alignment at Ecto-sp13_S_contig80877:225..380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80877.19427.1 ID=mRNA_Ecto-sp13_S_contig80877.19427.1|Name=mRNA_Ecto-sp13_S_contig80877.19427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80877:225..380+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAGGTCCTGATGGACATCGCCGACGTGGAGGGCGACCGGGAAGCCGG GGTGCGCACCCTGCCGGTGCTGATGGGCCGCCAGGCTGCCTTGGTCTTCG CCACGGCGCTGCTGTCGGTGGGGGTTGGCGCCGCCAGCGTCGGCATTCTC GAGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80877:225..380+

>mRNA_Ecto-sp13_S_contig80877.19427.1 ID=mRNA_Ecto-sp13_S_contig80877.19427.1|Name=mRNA_Ecto-sp13_S_contig80877.19427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80877:225..380+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATCGCCGACGTGGAGGGCGACCGGGAAGCCGGGGTGCGCACCCT
GCCGGTGCTGATGGGCCGCCAGGCTGCCTTGGTCTTCGCCACGGCGCTGC
TGTCGGTGGGGGTTGGCGCCGCCAGCGTCGGCATTCTCGAGGGT
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