mRNA_Ecto-sp13_S_contig12315.1942.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12315.1942.1
Unique NamemRNA_Ecto-sp13_S_contig12315.1942.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12315.1942.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 1.910e-6
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 PRKRAHPTPSWSHRSFESSRGASRQRH--HNRGGTTRSG 111
            PRK+AHPTPSWSHRSFES RGASRQR    +R G TR G
Sbjct:   41 PRKQAHPTPSWSHRSFESGRGASRQRDPVEHRFGHTRQG 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12315.1942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2C2_9PHAE1.910e-674.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12315contigEcto-sp13_S_contig12315:1875..2329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462655.8124635-CDS-Ecto-sp13_S_contig12315:1874..19521681462655.8124635-CDS-Ecto-sp13_S_contig12315:1874..1952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12315 1875..1952 +
1681462655.8309765-CDS-Ecto-sp13_S_contig12315:2250..23281681462655.8309765-CDS-Ecto-sp13_S_contig12315:2250..2328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12315 2251..2328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12315.1942.1prot_Ecto-sp13_S_contig12315.1942.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12315 1875..2328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12315.1942.1

>prot_Ecto-sp13_S_contig12315.1942.1 ID=prot_Ecto-sp13_S_contig12315.1942.1|Name=mRNA_Ecto-sp13_S_contig12315.1942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
PRKRAHPTPSWSHRSFESSRGASRQRHHNRGGTTRSGTAGEVIGLVRAWL
AE
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mRNA from alignment at Ecto-sp13_S_contig12315:1875..2329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12315.1942.1 ID=mRNA_Ecto-sp13_S_contig12315.1942.1|Name=mRNA_Ecto-sp13_S_contig12315.1942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12315:1875..2329+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAGGAAACGAGCACATCCCACGCCCAGCTGGAGTCATCGCTCATTTGA
GAGCAGTCGCGGCGCTTCGAGACAACGGGTAAGTGTGACACCATAGAGTC
CGGGGGTGGGGGTGGAGGAGCATGTCTACAGCGTGTAAATGTTGTTGATG
AACATGCGCATCCTGTCGACGAAGCTCTAGGCCTGGGTTTCCTATGAGGT
GCCGCGCTATACGTCCCTCTGTCCTGCTCATTCTCGTCCCCAGATCCTCA
CCCCTTTGCGTTGTATTTCGCTAGGTGGAAACGCCATTAGATATCGCCCT
CGAAGAGTCCAATTGCCTCTCTTGGGATGATCCAACGCAGCTGAAAACCT
GGTTACCTTTGTGCCTCTATCTCAAGCACCACAATCGGGGGGGTACGACA
AGGAGCGGAACCGCCGGGGAAGTGATAGGGTTGGTGCGTGCTTGGCTAGC
CGAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12315:1875..2329+

>mRNA_Ecto-sp13_S_contig12315.1942.1 ID=mRNA_Ecto-sp13_S_contig12315.1942.1|Name=mRNA_Ecto-sp13_S_contig12315.1942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12315:1875..2329+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGAGGAAACGAGCACATCCCACGCCCAGCTGGAGTCATCGCTCATTTGA
GAGCAGTCGCGGCGCTTCGAGACAACGGCACCACAATCGGGGGGGTACGA
CAAGGAGCGGAACCGCCGGGGAAGTGATAGGGTTGGTGCGTGCTTGGCTA
GCCGAG
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