mRNA_Ecto-sp13_S_contig80743.19415.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80743.19415.1
Unique NamemRNA_Ecto-sp13_S_contig80743.19415.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5KXR0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 5.810e-31
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNW IYQLDVVGAF
Sbjct:   54 RFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAF 108
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BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5KD17_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD17_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.760e-30
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNW IYQLDVVGAF
Sbjct:  139 RFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAF 193
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BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5JLG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.470e-30
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGG+RQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNW IYQLDVV +F
Sbjct:   54 RFKARLVVGGYRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVDSF 108
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BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.210e-30
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNW IYQLDVVGAF
Sbjct:   38 RFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAF 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5K4A3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A3_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.220e-30
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGGH QEPGQDYGRSYAPVCRI SIRMTCAIGCHNNW IYQLDVVGAF
Sbjct:   47 RFKARLVVGGHHQEPGQDYGRSYAPVCRIWSIRMTCAIGCHNNWPIYQLDVVGAF 101
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5KGS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.520e-30
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNW IYQLD+VGAF
Sbjct:   38 RFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDIVGAF 92
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5KH19_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH19_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 8.170e-30
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RFQARL VGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNW IYQLDVVGAF
Sbjct:  207 RFQARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAF 261
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5KD00_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD00_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.310e-29
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNW IYQLDVVGAF
Sbjct:  394 RFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAF 448
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5L0D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.460e-29
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGGHRQEPGQDYGRSYAPVCRI SIRMTCAIGCHNNW IYQLDVVGAF
Sbjct:  191 RFKARLVVGGHRQEPGQDYGRSYAPVCRIRSIRMTCAIGCHNNWPIYQLDVVGAF 245
[Close]
BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.560e-29
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLDVVGAF 165
            RF+ARL VGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNW IYQLDVVGAF
Sbjct:   38 RFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAF 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80743.19415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXR0_9PHAE5.810e-3194.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD17_9PHAE1.760e-3094.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLG1_9PHAE2.470e-3089.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K066_9PHAE3.210e-3094.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4A3_9PHAE3.220e-3090.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGS8_9PHAE3.520e-3092.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH19_9PHAE8.170e-3096.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KD00_9PHAE1.310e-2994.55Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0D6_9PHAE1.460e-2992.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE1.560e-2994.55Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80743contigEcto-sp13_S_contig80743:29..193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464080.6646042-CDS-Ecto-sp13_S_contig80743:28..1931681464080.6646042-CDS-Ecto-sp13_S_contig80743:28..193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80743 29..193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80743.19415.1prot_Ecto-sp13_S_contig80743.19415.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80743 29..193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80743.19415.1

>prot_Ecto-sp13_S_contig80743.19415.1 ID=prot_Ecto-sp13_S_contig80743.19415.1|Name=mRNA_Ecto-sp13_S_contig80743.19415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
RFQARLEVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWAIYQLD
VVGAF
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mRNA from alignment at Ecto-sp13_S_contig80743:29..193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80743.19415.1 ID=mRNA_Ecto-sp13_S_contig80743.19415.1|Name=mRNA_Ecto-sp13_S_contig80743.19415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80743:29..193+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTCCAAGCTCGCCTGGAAGTCGGAGGACATCGTCAAGAGCCAGGACA
GGATTACGGACGCAGCTACGCCCCAGTATGCCGTATCGGGAGCATTCGAA
TGACGTGCGCCATTGGCTGCCACAACAACTGGGCCATCTACCAACTGGAC
GTTGTCGGTGCCTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80743:29..193+

>mRNA_Ecto-sp13_S_contig80743.19415.1 ID=mRNA_Ecto-sp13_S_contig80743.19415.1|Name=mRNA_Ecto-sp13_S_contig80743.19415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80743:29..193+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTCCAAGCTCGCCTGGAAGTCGGAGGACATCGTCAAGAGCCAGGACA
GGATTACGGACGCAGCTACGCCCCAGTATGCCGTATCGGGAGCATTCGAA
TGACGTGCGCCATTGGCTGCCACAACAACTGGGCCATCTACCAACTGGAC
GTTGTCGGTGCCTTC
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